Wall clock time and date at job start Tue Mar 31 2020 12:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52989 * 109.47317 * 2 1 4 4 N 1.46497 * 109.47592 * 179.97438 * 3 2 1 5 5 C 1.36941 * 120.00365 * 275.66029 * 4 3 2 6 6 H 1.07997 * 119.99418 * 34.00527 * 5 4 3 7 7 C 1.38809 * 119.99827 * 214.00878 * 5 4 3 8 8 N 1.31621 * 120.00083 * 22.90577 * 7 5 4 9 9 Si 1.86796 * 120.00013 * 202.89885 * 7 5 4 10 10 H 1.48503 * 109.47090 * 89.99877 * 9 7 5 11 11 H 1.48491 * 109.47725 * 210.00514 * 9 7 5 12 12 H 1.48506 * 109.47060 * 330.00788 * 9 7 5 13 13 C 1.46508 * 119.99833 * 95.65554 * 4 3 2 14 14 C 1.50702 * 109.47105 * 270.00159 * 13 4 3 15 15 C 1.38385 * 119.92709 * 270.30261 * 14 13 4 16 16 C 1.38344 * 120.30221 * 180.25892 * 15 14 13 17 17 C 1.37961 * 120.15055 * 359.43923 * 16 15 14 18 18 C 1.39608 * 119.84634 * 0.27379 * 17 16 15 19 19 C 1.47729 * 120.14860 * 179.97438 * 18 17 16 20 20 O 1.21472 * 120.00105 * 180.02562 * 19 18 17 21 21 O 1.34713 * 120.00102 * 0.02562 * 19 18 17 22 22 C 1.45195 * 117.00032 * 180.02562 * 21 19 18 23 23 C 1.52998 * 109.47466 * 59.99654 * 22 21 19 24 24 C 1.53001 * 109.47016 * 179.97438 * 22 21 19 25 25 C 1.53001 * 109.46931 * 299.99626 * 22 21 19 26 26 C 1.37924 * 119.92105 * 89.99999 * 14 13 4 27 27 H 1.09004 * 109.46695 * 60.00336 * 1 2 3 28 28 H 1.08998 * 109.46997 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47220 * 300.00218 * 1 2 3 30 30 H 1.08999 * 109.47486 * 239.99462 * 2 1 3 31 31 H 1.09008 * 109.46990 * 120.00035 * 2 1 3 32 32 H 1.09003 * 109.47647 * 59.99668 * 3 2 1 33 33 H 1.09005 * 109.47615 * 299.99863 * 3 2 1 34 34 H 0.97005 * 119.99740 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46674 * 150.00511 * 13 4 3 36 36 H 1.08998 * 109.47217 * 30.00099 * 13 4 3 37 37 H 1.08002 * 119.84842 * 359.97056 * 15 14 13 38 38 H 1.08010 * 119.92324 * 179.71873 * 16 15 14 39 39 H 1.08002 * 120.07924 * 180.26210 * 17 16 15 40 40 H 1.08999 * 109.46918 * 59.99963 * 23 22 21 41 41 H 1.09000 * 109.47351 * 179.97438 * 23 22 21 42 42 H 1.08996 * 109.47220 * 300.00005 * 23 22 21 43 43 H 1.09000 * 109.47105 * 60.00298 * 24 22 21 44 44 H 1.09010 * 109.47311 * 179.97438 * 24 22 21 45 45 H 1.08995 * 109.47445 * 299.99528 * 24 22 21 46 46 H 1.08996 * 109.47141 * 60.00371 * 25 22 21 47 47 H 1.09000 * 109.46843 * 180.02562 * 25 22 21 48 48 H 1.09004 * 109.47230 * 299.99735 * 25 22 21 49 49 H 1.07997 * 120.07845 * 0.04294 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1893 1.3257 1.1810 6 1 3.7875 0.7209 1.9805 7 6 5.3992 1.9848 1.3500 8 7 5.6804 3.0421 0.6184 9 14 6.6283 1.3711 2.6157 10 1 7.5387 0.3831 1.9832 11 1 7.4213 2.5158 3.1313 12 1 5.9018 0.7263 3.7391 13 6 4.2380 1.5673 -1.2617 14 6 4.4895 0.1962 -1.8344 15 6 5.6401 -0.4935 -1.4946 16 6 5.8813 -1.7504 -2.0200 17 6 4.9693 -2.3295 -2.8780 18 6 3.8036 -1.6418 -3.2203 19 6 2.8227 -2.2553 -4.1389 20 8 1.8095 -1.6543 -4.4353 21 8 3.0518 -3.4814 -4.6479 22 6 2.0454 -4.0217 -5.5441 23 6 1.8897 -3.0972 -6.7532 24 6 2.4770 -5.4112 -6.0174 25 6 0.7089 -4.1261 -4.8065 26 6 3.5692 -0.3709 -2.6910 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6768 1.9563 -0.8900 34 1 6.5258 3.5029 0.7367 35 1 5.1904 2.0658 -1.0810 36 1 3.6492 2.1534 -1.9674 37 1 6.3552 -0.0466 -0.8199 38 1 6.7835 -2.2814 -1.7542 39 1 5.1567 -3.3126 -3.2841 40 1 2.8418 -3.0228 -7.2786 41 1 1.1345 -3.5031 -7.4262 42 1 1.5824 -2.1072 -6.4163 43 1 2.5881 -6.0701 -5.1563 44 1 1.7212 -5.8171 -6.6899 45 1 3.4290 -5.3365 -6.5430 46 1 0.4016 -3.1361 -4.4697 47 1 -0.0465 -4.5321 -5.4792 48 1 0.8198 -4.7848 -3.9452 49 1 2.6697 0.1667 -2.9521 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179971008.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:59 Heat of formation + Delta-G solvation = -56.561134 kcal Electronic energy + Delta-G solvation = -27908.968070 eV Core-core repulsion = 24222.284197 eV Total energy + Delta-G solvation = -3686.683873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.71615 -38.74908 -36.78705 -36.00252 -34.11191 -33.04313 -31.60052 -30.70285 -30.07000 -27.56597 -27.51871 -25.84812 -25.54972 -24.37409 -22.34675 -21.31144 -20.96290 -20.14198 -19.27725 -17.30987 -16.64588 -16.55000 -15.85796 -15.69010 -15.11499 -14.57802 -14.46096 -14.39983 -14.27185 -13.80352 -13.59652 -13.43251 -13.19158 -12.99821 -12.63949 -12.52597 -12.35616 -12.06398 -12.02649 -11.97954 -11.59651 -11.48301 -11.44634 -11.41747 -11.10602 -10.99207 -10.92544 -10.72033 -10.45152 -10.41934 -10.28967 -10.10470 -9.98857 -9.82146 -9.73630 -8.56564 -8.52104 -8.16692 -6.68970 -5.86723 -3.39624 1.14747 1.88066 2.73449 2.89587 3.30691 3.39965 3.41487 4.25579 4.44434 4.56825 4.62232 4.74251 4.80156 5.20786 5.28736 5.30164 5.37339 5.39312 5.51448 5.52238 5.55199 5.63431 5.69985 5.71812 5.76155 5.81469 5.84769 5.90512 5.98475 6.12503 6.12929 6.15981 6.24606 6.29421 6.47492 6.51364 6.55519 6.60108 6.64674 6.67976 6.72870 6.94712 6.98336 7.17326 7.28140 7.41541 7.61155 7.76619 8.00304 8.42594 9.10268 9.73831 10.30381 11.13080 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016890 B = 0.003712 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.392374 B = 7541.012459 C = 8427.184977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.148 3.852 4 N -0.576 5.576 5 C -0.251 4.251 6 H 0.062 0.938 7 C 0.009 3.991 8 N -0.884 5.884 9 Si 0.892 3.108 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.277 1.277 13 C 0.168 3.832 14 C -0.081 4.081 15 C -0.062 4.062 16 C -0.140 4.140 17 C -0.085 4.085 18 C -0.141 4.141 19 C 0.516 3.484 20 O -0.508 6.508 21 O -0.349 6.349 22 C 0.117 3.883 23 C -0.183 4.183 24 C -0.140 4.140 25 C -0.183 4.183 26 C -0.052 4.052 27 H 0.047 0.953 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.036 0.964 34 H 0.256 0.744 35 H 0.112 0.888 36 H 0.036 0.964 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.085 0.915 47 H 0.068 0.932 48 H 0.061 0.939 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.685 -12.896 -11.619 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.022 3.978 4 N -0.294 5.294 5 C -0.380 4.380 6 H 0.080 0.920 7 C -0.191 4.191 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.042 3.958 14 C -0.085 4.085 15 C -0.081 4.081 16 C -0.158 4.158 17 C -0.104 4.104 18 C -0.143 4.143 19 C 0.362 3.638 20 O -0.398 6.398 21 O -0.267 6.267 22 C 0.081 3.919 23 C -0.240 4.240 24 C -0.197 4.197 25 C -0.240 4.240 26 C -0.071 4.071 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.129 0.871 36 H 0.055 0.945 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.087 0.913 48 H 0.080 0.920 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.886 -12.569 -11.686 17.844 hybrid contribution 0.574 -0.581 0.613 1.021 sum -4.312 -13.150 -11.073 17.724 Atomic orbital electron populations 1.21710 0.97380 1.00333 1.00957 1.22170 0.93790 1.00942 1.01673 1.20930 0.84859 0.93066 0.98948 1.43777 0.99447 1.84137 1.02017 1.19072 1.03015 1.23001 0.92955 0.91998 1.25056 1.00630 0.95002 0.98377 1.69976 1.23713 1.16664 1.42338 0.86444 0.81643 0.78193 0.81542 1.21162 1.21698 1.20231 1.20176 1.01244 0.88424 0.85929 1.21302 0.92454 1.01101 0.93613 1.21441 0.96943 0.93592 0.96092 1.21100 0.99628 0.96265 0.98825 1.21176 0.92909 0.99135 0.97153 1.19046 0.95961 0.96755 1.02500 1.21298 0.85193 0.78965 0.78311 1.90707 1.27858 1.62875 1.58332 1.86603 1.48862 1.32668 1.58528 1.22126 0.87230 0.93863 0.88728 1.22491 1.02513 1.01978 0.97018 1.21839 1.02378 0.93689 1.01766 1.22494 0.95990 1.04663 1.00895 1.21145 0.98681 0.92525 0.94712 0.93380 0.93949 0.93301 0.92581 0.92638 0.93642 0.94602 0.93374 0.87074 0.94547 0.85533 0.86149 0.85719 0.92074 0.91269 0.89630 0.91510 0.90516 0.91523 0.89592 0.91279 0.92040 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 37.16 0.37 -1.92 16 2 C -0.15 -2.75 6.22 -26.74 -0.17 -2.92 16 3 C 0.15 3.10 5.72 -4.05 -0.02 3.07 16 4 N -0.58 -13.68 2.44 -174.61 -0.43 -14.11 16 5 C -0.25 -6.52 9.48 -15.06 -0.14 -6.67 16 6 H 0.06 1.64 7.93 -52.49 -0.42 1.23 16 7 C 0.01 0.24 4.95 -17.43 -0.09 0.16 16 8 N -0.88 -24.01 11.31 55.49 0.63 -23.38 16 9 Si 0.89 20.60 29.61 -169.99 -5.03 15.56 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.17 3.78 5.45 -5.19 -0.03 3.75 16 14 C -0.08 -1.62 5.44 -104.68 -0.57 -2.19 16 15 C -0.06 -1.17 9.69 -39.49 -0.38 -1.55 16 16 C -0.14 -2.25 10.03 -39.64 -0.40 -2.65 16 17 C -0.08 -1.32 9.62 -39.17 -0.38 -1.70 16 18 C -0.14 -2.41 5.87 -104.98 -0.62 -3.03 16 19 C 0.52 8.38 7.21 34.61 0.25 8.63 16 20 O -0.51 -8.86 11.89 -19.24 -0.23 -9.09 16 21 O -0.35 -4.92 9.14 -40.53 -0.37 -5.30 16 22 C 0.12 1.33 1.13 -90.62 -0.10 1.23 16 23 C -0.18 -1.99 8.37 37.16 0.31 -1.68 16 24 C -0.14 -1.17 8.85 37.16 0.33 -0.84 16 25 C -0.18 -2.06 8.37 37.16 0.31 -1.74 16 26 C -0.05 -0.95 7.41 -39.17 -0.29 -1.24 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.10 6.13 -51.93 -0.32 0.78 16 31 H 0.05 1.12 8.14 -51.92 -0.42 0.70 16 32 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 33 H 0.04 0.71 7.83 -51.93 -0.41 0.31 16 34 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 35 H 0.11 2.78 5.26 -51.93 -0.27 2.51 16 36 H 0.04 0.78 7.80 -51.93 -0.40 0.38 16 37 H 0.13 2.55 8.06 -52.49 -0.42 2.12 16 38 H 0.12 1.62 8.06 -52.48 -0.42 1.19 16 39 H 0.12 1.66 7.61 -52.49 -0.40 1.26 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 1.14 5.88 -51.93 -0.31 0.83 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.09 1.18 5.88 -51.93 -0.31 0.87 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.13 2.36 7.62 -52.49 -0.40 1.96 16 LS Contribution 393.46 15.07 5.93 5.93 Total: -1.00 -27.75 393.46 -9.40 -37.14 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -8.28 Total: 4.54 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -1.61 Total: -11.30 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.20 Total: -37.49 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.60 Total: -14.39 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -27.75 -9.40 -37.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179971008.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.419 kcal (2) G-P(sol) polarization free energy of solvation -27.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds