Wall clock time and date at job start Tue Mar 31 2020 14:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47349 * 2 1 4 4 O 1.45197 * 109.47148 * 120.00095 * 2 1 3 5 5 C 1.34231 * 117.00052 * 89.99815 * 4 2 1 6 6 O 1.20821 * 120.00039 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99886 * 180.02562 * 5 4 2 8 8 C 1.52995 * 109.47201 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.47127 * 54.99983 * 8 7 5 10 10 N 1.46905 * 109.47133 * 294.99911 * 8 7 5 11 11 C 1.46902 * 110.99800 * 154.99741 * 10 8 7 12 12 C 1.53006 * 109.46626 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.46626 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46957 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00340 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99773 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00296 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47086 * 59.99480 * 18 16 14 20 20 H 1.48494 * 109.47288 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46879 * 299.99424 * 18 16 14 22 22 C 1.50696 * 109.47547 * 174.99623 * 8 7 5 23 23 C 1.38235 * 119.99495 * 79.72581 * 22 8 7 24 24 C 1.38239 * 119.99811 * 179.81537 * 23 22 8 25 25 C 1.38235 * 119.99985 * 0.39449 * 24 23 22 26 26 C 1.38237 * 119.99614 * 359.85895 * 25 24 23 27 27 C 1.38227 * 120.00412 * 359.95338 * 26 25 24 28 28 H 1.09003 * 109.46945 * 300.00094 * 1 2 3 29 29 H 1.09000 * 109.47185 * 59.99981 * 1 2 3 30 30 H 1.08995 * 109.47477 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46945 * 239.99905 * 2 1 3 32 32 H 1.08999 * 109.47150 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46993 * 300.00136 * 3 2 1 34 34 H 1.09003 * 109.47174 * 60.00046 * 3 2 1 35 35 H 1.09001 * 109.47215 * 59.99909 * 7 5 4 36 36 H 1.09003 * 109.46815 * 299.99526 * 7 5 4 37 37 H 1.00898 * 110.99743 * 31.04791 * 10 8 7 38 38 H 1.09000 * 109.47263 * 60.00269 * 11 10 8 39 39 H 1.09001 * 109.47582 * 299.99548 * 11 10 8 40 40 H 1.08993 * 109.46955 * 300.00347 * 12 11 10 41 41 H 1.09000 * 109.47050 * 60.00176 * 12 11 10 42 42 H 1.08993 * 109.47839 * 299.99931 * 13 12 11 43 43 H 1.09000 * 109.47160 * 60.00369 * 13 12 11 44 44 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 45 45 H 1.07997 * 120.00215 * 0.02562 * 23 22 8 46 46 H 1.07998 * 120.00126 * 180.23141 * 24 23 22 47 47 H 1.07999 * 120.00175 * 179.84138 * 25 24 23 48 48 H 1.08006 * 119.99445 * 179.97438 * 26 25 24 49 49 H 1.08000 * 120.00402 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 -2.0075 1.0851 6 8 1.9973 -2.5749 0.0413 7 6 2.7182 -2.7854 2.2746 8 6 2.8623 -4.2606 1.8955 9 1 3.5021 -4.3492 1.0174 10 7 1.5378 -4.8205 1.5949 11 6 1.6468 -5.9756 0.6938 12 6 0.2505 -6.5306 0.4051 13 6 0.3639 -7.7332 -0.5339 14 6 -1.0115 -8.2795 -0.8189 15 1 -1.8796 -7.8150 -0.3750 16 6 -1.1615 -9.3721 -1.6462 17 7 -0.1044 -9.9374 -2.1871 18 14 -2.8663 -10.0488 -2.0000 19 1 -3.6933 -8.9959 -2.6426 20 1 -2.7563 -11.2161 -2.9112 21 1 -3.5047 -10.4719 -0.7277 22 6 3.4785 -5.0167 3.0441 23 6 2.6969 -5.3993 4.1182 24 6 3.2613 -6.0963 5.1702 25 6 4.6089 -6.4035 5.1519 26 6 5.3916 -6.0163 4.0802 27 6 4.8264 -5.3228 3.0265 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.0087 -2.6895 3.0966 36 1 3.6872 -2.3929 2.5833 37 1 0.9270 -4.1167 1.2083 38 1 2.2541 -6.7483 1.1653 39 1 2.1150 -5.6650 -0.2402 40 1 -0.2173 -6.8412 1.3392 41 1 -0.3572 -5.7581 -0.0662 42 1 0.8315 -7.4221 -1.4680 43 1 0.9717 -8.5058 -0.0630 44 1 -0.2099 -10.7059 -2.7695 45 1 1.6446 -5.1567 4.1339 46 1 2.6499 -6.3985 6.0076 47 1 5.0504 -6.9458 5.9749 48 1 6.4446 -6.2560 4.0661 49 1 5.4379 -5.0199 2.1894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181830761.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:35 Heat of formation + Delta-G solvation = -86.603498 kcal Electronic energy + Delta-G solvation = -26638.948968 eV Core-core repulsion = 22950.962360 eV Total energy + Delta-G solvation = -3687.986608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.90242 -39.39304 -37.45125 -36.14963 -34.03493 -33.43239 -32.26281 -30.84232 -30.20278 -29.73443 -27.59888 -26.10541 -24.41743 -22.69302 -22.35445 -22.16613 -20.84820 -20.34386 -19.77924 -18.06271 -16.85069 -16.54728 -16.32194 -16.18339 -15.66814 -15.16892 -14.87000 -14.54263 -14.42090 -14.18671 -13.95850 -13.65875 -13.41459 -13.27356 -13.01616 -12.70827 -12.62523 -12.53472 -12.29160 -12.11458 -12.07143 -11.91474 -11.43847 -11.27376 -11.19775 -11.05769 -10.92362 -10.79486 -10.73159 -10.56666 -10.49857 -10.37856 -9.59940 -9.26602 -8.99310 -8.84535 -8.67465 -8.27015 -8.16062 -5.92284 -3.94093 1.36254 1.48909 2.04491 2.45376 3.38215 3.41853 3.44835 3.82404 4.28845 4.36674 4.48518 4.53100 4.60592 4.75741 4.84837 4.89745 4.97314 5.04881 5.12881 5.21464 5.22170 5.31024 5.38400 5.43161 5.46088 5.54146 5.58296 5.63299 5.69656 5.76388 5.87807 5.93253 6.00499 6.09646 6.14207 6.30728 6.47041 6.50300 6.58605 6.65226 6.84129 6.89549 7.06084 7.23997 7.39326 7.57069 7.70739 7.77228 7.94144 8.08978 8.52246 9.12937 9.69175 11.19240 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.007492 B = 0.003596 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3736.643498 B = 7785.244251 C =10889.175271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.079 3.921 3 C -0.149 4.149 4 O -0.355 6.355 5 C 0.458 3.542 6 O -0.499 6.499 7 C -0.113 4.113 8 C 0.136 3.864 9 H 0.061 0.939 10 N -0.679 5.679 11 C 0.065 3.935 12 C -0.104 4.104 13 C 0.023 3.977 14 C -0.517 4.517 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.074 4.074 23 C -0.081 4.081 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.115 4.115 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.342 0.658 38 H 0.065 0.935 39 H 0.028 0.972 40 H 0.054 0.946 41 H 0.043 0.957 42 H 0.013 0.987 43 H 0.015 0.985 44 H 0.260 0.740 45 H 0.132 0.868 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.965 20.901 12.572 26.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.024 3.976 3 C -0.206 4.206 4 O -0.272 6.272 5 C 0.301 3.699 6 O -0.386 6.386 7 C -0.151 4.151 8 C 0.026 3.974 9 H 0.079 0.921 10 N -0.312 5.312 11 C -0.064 4.064 12 C -0.142 4.142 13 C -0.014 4.014 14 C -0.556 4.556 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.075 4.075 23 C -0.099 4.099 24 C -0.145 4.145 25 C -0.141 4.141 26 C -0.144 4.144 27 C -0.134 4.134 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.161 0.839 38 H 0.083 0.917 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.070 0.930 45 H 0.149 0.851 46 H 0.137 0.863 47 H 0.135 0.865 48 H 0.136 0.864 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.906 20.244 12.662 25.851 hybrid contribution -0.711 -0.123 -1.292 1.480 sum 9.195 20.121 11.369 24.873 Atomic orbital electron populations 1.22214 0.94074 1.03505 1.03027 1.22752 0.94822 0.92943 0.87061 1.21888 1.01983 0.93561 1.03165 1.86558 1.77036 1.22338 1.41308 1.23829 0.74464 0.81317 0.90278 1.90733 1.47396 1.69735 1.30721 1.21664 1.04458 0.93647 0.95319 1.20166 0.92710 0.89176 0.95395 0.92080 1.60722 1.09299 1.11265 1.49875 1.22089 0.99730 0.91511 0.93032 1.21589 0.93397 0.99047 1.00216 1.19043 0.96955 0.91650 0.93769 1.21232 0.93054 1.13138 1.28156 0.92785 1.25028 0.96615 0.96854 0.96037 1.69962 1.28744 1.22626 1.32323 0.86664 0.84815 0.78405 0.78146 1.20303 1.21341 1.20244 1.19705 0.93153 0.99264 0.95388 1.21077 1.00257 0.96349 0.92228 1.21201 0.95091 0.99219 0.98943 1.21132 0.94328 1.00168 0.98429 1.21038 0.99704 0.99275 0.94354 1.21026 0.94590 0.99175 0.98596 0.91560 0.90674 0.91579 0.89628 0.91779 0.90365 0.91393 0.86640 0.87086 0.83863 0.91688 0.95362 0.92755 0.93793 0.96839 0.96652 0.93046 0.85051 0.86258 0.86504 0.86383 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 9.55 37.16 0.35 -1.16 16 2 C 0.08 0.74 3.18 -26.73 -0.09 0.66 16 3 C -0.15 -0.99 9.57 37.16 0.36 -0.64 16 4 O -0.35 -3.80 9.88 -39.26 -0.39 -4.19 16 5 C 0.46 5.46 7.40 36.01 0.27 5.72 16 6 O -0.50 -7.57 13.80 -18.75 -0.26 -7.83 16 7 C -0.11 -1.12 5.39 -27.88 -0.15 -1.27 16 8 C 0.14 1.73 1.80 -68.87 -0.12 1.61 16 9 H 0.06 0.86 7.47 -51.93 -0.39 0.47 16 10 N -0.68 -10.44 5.43 -107.95 -0.59 -11.03 16 11 C 0.06 1.23 5.48 -3.82 -0.02 1.21 16 12 C -0.10 -2.32 5.41 -26.73 -0.14 -2.47 16 13 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 14 C -0.52 -15.34 9.11 -34.44 -0.31 -15.65 16 15 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -27.94 13.29 55.43 0.74 -27.20 16 18 Si 0.89 22.38 29.54 -169.99 -5.02 17.36 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C -0.07 -0.92 4.71 -104.63 -0.49 -1.42 16 23 C -0.08 -1.00 9.32 -39.58 -0.37 -1.37 16 24 C -0.13 -1.43 10.05 -39.58 -0.40 -1.82 16 25 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 26 C -0.13 -1.35 10.05 -39.59 -0.40 -1.74 16 27 C -0.12 -1.33 9.67 -39.59 -0.38 -1.71 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.92 7.16 -51.93 -0.37 0.55 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.34 5.36 6.50 -39.29 -0.26 5.11 16 38 H 0.06 1.28 8.00 -51.93 -0.42 0.86 16 39 H 0.03 0.56 8.06 -51.93 -0.42 0.15 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 45 H 0.13 1.62 7.73 -52.49 -0.41 1.22 16 46 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 47 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 48 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 49 H 0.12 1.19 8.04 -52.49 -0.42 0.77 16 LS Contribution 405.31 15.07 6.11 6.11 Total: -1.00 -33.26 405.31 -10.50 -43.76 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -8.56 Total: 2.72 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -2.54 Total: -19.69 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.15 Total: -38.23 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.65 Total: -12.03 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.26 -10.50 -43.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181830761.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.842 kcal (2) G-P(sol) polarization free energy of solvation -33.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds