Wall clock time and date at job start Tue Mar 31 2020 12:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47201 * 2 1 4 4 H 1.08995 * 109.46757 * 304.99912 * 3 2 1 5 5 C 1.50703 * 109.47080 * 184.99516 * 3 2 1 6 6 H 1.07995 * 119.99822 * 239.99461 * 5 3 2 7 7 C 1.37879 * 119.99838 * 59.99958 * 5 3 2 8 8 N 1.31519 * 120.00026 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00018 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46724 * 90.00092 * 9 7 5 11 11 H 1.48498 * 109.47481 * 210.00196 * 9 7 5 12 12 H 1.48496 * 109.47030 * 330.00590 * 9 7 5 13 13 N 1.46496 * 109.47071 * 64.99664 * 3 2 1 14 14 C 1.34774 * 120.00167 * 274.99995 * 13 3 2 15 15 O 1.21289 * 120.00108 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00271 * 180.02562 * 14 13 3 17 17 C 1.53009 * 109.47139 * 180.02562 * 16 14 13 18 18 H 1.08999 * 109.47262 * 54.99792 * 17 16 14 19 19 C 1.53002 * 109.46784 * 295.00072 * 17 16 14 20 20 C 1.52997 * 109.47114 * 174.99973 * 17 16 14 21 21 C 1.50694 * 109.47066 * 185.00004 * 20 17 16 22 22 C 1.38173 * 120.02769 * 265.00090 * 21 20 17 23 23 C 1.38232 * 120.05858 * 179.97438 * 22 21 20 24 24 C 1.38294 * 120.11124 * 0.02562 * 23 22 21 25 25 C 1.38122 * 120.05499 * 359.97438 * 24 23 22 26 26 C 1.38705 * 120.03060 * 85.29565 * 21 20 17 27 27 O 1.35904 * 120.05898 * 0.02562 * 26 21 20 28 28 C 1.42900 * 117.00131 * 180.29486 * 27 26 21 29 29 H 1.08994 * 109.47703 * 300.00014 * 1 2 3 30 30 H 1.09000 * 109.47219 * 60.00317 * 1 2 3 31 31 H 1.09002 * 109.47119 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47609 * 239.99234 * 2 1 3 33 33 H 1.09007 * 109.47084 * 119.99306 * 2 1 3 34 34 H 0.96996 * 119.99622 * 180.02562 * 8 7 5 35 35 H 0.97004 * 120.00208 * 94.99990 * 13 3 2 36 36 H 1.08994 * 109.46832 * 60.00153 * 16 14 13 37 37 H 1.09001 * 109.46755 * 299.99928 * 16 14 13 38 38 H 1.09002 * 109.47032 * 180.02562 * 19 17 16 39 39 H 1.08999 * 109.46993 * 299.99885 * 19 17 16 40 40 H 1.08998 * 109.47413 * 59.99954 * 19 17 16 41 41 H 1.09002 * 109.46944 * 64.99432 * 20 17 16 42 42 H 1.09002 * 109.46713 * 304.99843 * 20 17 16 43 43 H 1.08008 * 119.97007 * 359.97438 * 22 21 20 44 44 H 1.08003 * 119.94745 * 179.97438 * 23 22 21 45 45 H 1.07999 * 119.97251 * 180.02562 * 24 23 22 46 46 H 1.08002 * 120.02504 * 180.02562 * 25 24 23 47 47 H 1.08999 * 109.46959 * 179.97438 * 28 27 26 48 48 H 1.09000 * 109.46950 * 300.00206 * 28 27 26 49 49 H 1.08994 * 109.46928 * 60.00366 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1471 1.8889 0.6524 7 6 4.1433 0.8783 -1.2278 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8811 -1.3815 10 1 6.5548 -0.3504 -0.7598 11 1 6.3831 0.9222 -2.8170 12 1 6.5569 2.0736 -0.6899 13 7 1.6523 2.0975 1.2517 14 6 0.4351 2.6644 1.3668 15 8 -0.3397 2.6320 0.4342 16 6 0.0365 3.3387 2.6543 17 6 -1.3829 3.8944 2.5209 18 1 -2.0597 3.0941 2.2218 19 6 -1.4005 4.9994 1.4629 20 6 -1.8343 4.4683 3.8654 21 6 -3.2737 4.9037 3.7678 22 6 -3.5799 6.2195 3.4775 23 6 -4.9000 6.6195 3.3873 24 6 -5.9174 5.7045 3.5878 25 6 -5.6166 4.3881 3.8783 26 6 -4.2923 3.9855 3.9754 27 8 -3.9939 2.6922 4.2675 28 6 -5.0935 1.8007 4.4623 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8294 -0.0611 -2.9497 35 1 2.2718 2.1232 1.9978 36 1 0.7279 4.1542 2.8665 37 1 0.0678 2.6146 3.4685 38 1 -2.4115 5.3956 1.3681 39 1 -0.7236 5.7997 1.7620 40 1 -1.0789 4.5906 0.5050 41 1 -1.2119 5.3256 4.1219 42 1 -1.7372 3.7048 4.6373 43 1 -2.7870 6.9360 3.3209 44 1 -5.1372 7.6485 3.1607 45 1 -6.9480 6.0194 3.5164 46 1 -6.4116 3.6739 4.0344 47 1 -4.7168 0.8030 4.6879 48 1 -5.7056 2.1546 5.2919 49 1 -5.6968 1.7643 3.5553 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183796211.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:39 Heat of formation + Delta-G solvation = -75.046518 kcal Electronic energy + Delta-G solvation = -27214.399679 eV Core-core repulsion = 23526.914219 eV Total energy + Delta-G solvation = -3687.485460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.45038 -39.10233 -37.61499 -35.94833 -34.68930 -32.31164 -31.62745 -30.78084 -30.25029 -27.92266 -27.45025 -26.59288 -26.25703 -23.01904 -22.25353 -22.01304 -20.52321 -19.53772 -19.16479 -18.07944 -17.01027 -16.36666 -15.93954 -15.88453 -15.49377 -15.16104 -15.08622 -14.60648 -14.28479 -14.12105 -13.72248 -13.60523 -13.36230 -12.81184 -12.66573 -12.44460 -12.27124 -12.12288 -12.05510 -11.73141 -11.45279 -11.29506 -11.20308 -11.19669 -11.08769 -10.96439 -10.85305 -10.66989 -10.51215 -10.36814 -10.25344 -10.08226 -9.56588 -8.99813 -8.94208 -8.73947 -8.45185 -8.22098 -7.69547 -6.08605 -4.17639 1.19679 1.32585 3.16173 3.25961 3.32932 3.35096 3.57416 3.62428 4.21663 4.43974 4.61242 4.66624 4.86463 4.91555 4.97229 5.09915 5.14686 5.22368 5.29785 5.30605 5.33205 5.41360 5.51144 5.67666 5.75376 5.87020 5.93246 5.96454 6.01591 6.14421 6.20893 6.34629 6.37915 6.44462 6.45473 6.52094 6.63410 6.71697 6.72556 6.82485 7.10488 7.26446 7.27632 7.44036 7.57260 7.67616 7.80788 7.96897 8.24019 8.78312 8.84907 9.28019 9.50741 10.96665 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.023810 B = 0.002624 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.670650 B =10667.808125 C =11212.389746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.713 5.713 14 C 0.501 3.499 15 O -0.547 6.547 16 C -0.139 4.139 17 C -0.062 4.062 18 H 0.078 0.922 19 C -0.152 4.152 20 C -0.070 4.070 21 C -0.102 4.102 22 C -0.078 4.078 23 C -0.158 4.158 24 C -0.089 4.089 25 C -0.209 4.209 26 C 0.129 3.871 27 O -0.309 6.309 28 C 0.028 3.972 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.020 0.980 32 H 0.097 0.903 33 H 0.029 0.971 34 H 0.264 0.736 35 H 0.387 0.613 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.048 0.952 39 H 0.043 0.957 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.128 0.872 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.125 0.875 47 H 0.100 0.900 48 H 0.052 0.948 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.959 8.293 14.950 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.360 5.360 14 C 0.286 3.714 15 O -0.426 6.426 16 C -0.179 4.179 17 C -0.081 4.081 18 H 0.097 0.903 19 C -0.209 4.209 20 C -0.107 4.107 21 C -0.102 4.102 22 C -0.096 4.096 23 C -0.176 4.176 24 C -0.108 4.108 25 C -0.228 4.228 26 C 0.084 3.916 27 O -0.223 6.223 28 C -0.068 4.068 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.039 0.961 32 H 0.115 0.885 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.218 0.782 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.146 0.854 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.143 0.857 47 H 0.118 0.882 48 H 0.071 0.929 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.289 8.060 14.089 22.996 hybrid contribution 0.942 -0.141 0.269 0.990 sum -15.346 7.918 14.359 22.459 Atomic orbital electron populations 1.21827 0.98348 0.97852 1.01295 1.21924 0.92611 0.99955 1.02084 1.18729 0.93991 0.89115 0.81310 0.93437 1.21259 0.90902 1.38778 1.06156 0.92183 1.24891 0.98502 0.94919 0.95431 1.69901 1.35038 1.37734 1.09360 0.86479 0.85057 0.78403 0.77336 1.20593 1.21113 1.19896 1.46514 1.14896 1.56278 1.18349 1.20387 0.82533 0.79191 0.89291 1.90625 1.51336 1.59761 1.40864 1.21766 0.98081 1.00910 0.97187 1.20747 0.95093 0.98509 0.93782 0.90326 1.21986 1.00783 0.97415 1.00732 1.20563 0.90893 1.00957 0.98275 1.19266 0.94798 0.92344 1.03811 1.20930 0.96634 0.94568 0.97484 1.21027 0.92776 0.99752 1.04057 1.20878 0.99196 0.92597 0.98089 1.21206 0.95047 0.97844 1.08688 1.18883 0.92809 0.83966 0.95945 1.86118 1.34464 1.16852 1.84816 1.23048 0.89692 0.93295 1.00729 0.94146 0.93229 0.96082 0.88468 0.95195 0.92639 0.78156 0.89755 0.89793 0.93277 0.93809 0.90238 0.91205 0.90760 0.85410 0.86104 0.86148 0.85722 0.88194 0.92936 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.15 0.32 -2.78 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.85 2.24 -69.08 -0.15 6.69 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.16 8.73 -34.44 -0.30 -14.46 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.97 11.30 55.43 0.63 -24.35 16 9 Si 0.90 20.76 29.54 -169.99 -5.02 15.73 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.71 -14.77 5.02 -54.93 -0.28 -15.05 16 14 C 0.50 9.76 6.12 -10.99 -0.07 9.69 16 15 O -0.55 -12.45 11.10 5.55 0.06 -12.39 16 16 C -0.14 -2.00 5.18 -27.88 -0.14 -2.15 16 17 C -0.06 -0.88 2.03 -90.62 -0.18 -1.07 16 18 H 0.08 1.32 7.96 -51.93 -0.41 0.90 16 19 C -0.15 -2.23 8.58 37.16 0.32 -1.91 16 20 C -0.07 -0.81 4.55 -27.89 -0.13 -0.94 16 21 C -0.10 -1.21 4.58 -104.48 -0.48 -1.69 16 22 C -0.08 -0.82 8.35 -39.61 -0.33 -1.15 16 23 C -0.16 -1.51 10.04 -39.56 -0.40 -1.91 16 24 C -0.09 -0.84 10.04 -39.60 -0.40 -1.24 16 25 C -0.21 -2.15 9.04 -39.43 -0.36 -2.51 16 26 C 0.13 1.55 6.66 -39.22 -0.26 1.29 16 27 O -0.31 -3.71 9.63 -19.44 -0.19 -3.90 16 28 C 0.03 0.22 9.81 101.05 0.99 1.22 16 29 H 0.04 0.89 5.64 -51.93 -0.29 0.60 16 30 H 0.05 1.20 7.85 -51.93 -0.41 0.80 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 33 H 0.03 0.71 8.14 -51.92 -0.42 0.28 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.39 7.01 8.54 -40.82 -0.35 6.66 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.05 0.68 6.51 -51.93 -0.34 0.34 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.08 1.43 5.95 -51.93 -0.31 1.12 16 41 H 0.07 0.71 8.05 -51.93 -0.42 0.29 16 42 H 0.07 0.86 7.68 -51.93 -0.40 0.46 16 43 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 44 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 45 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.12 1.02 6.30 -52.49 -0.33 0.69 16 47 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 49 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 LS Contribution 385.51 15.07 5.81 5.81 Total: -1.00 -31.10 385.51 -8.90 -40.00 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -8.10 Total: 8.65 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -1.81 Total: -14.51 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.35 Total: -39.39 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.13 Total: -16.29 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.10 -8.90 -40.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183796211.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.046 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds