Wall clock time and date at job start Tue Mar 31 2020 12:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47674 * 2 1 4 4 H 1.09001 * 109.46773 * 54.99863 * 3 2 1 5 5 C 1.50698 * 109.47432 * 174.99919 * 3 2 1 6 6 H 1.08003 * 119.99850 * 120.00267 * 5 3 2 7 7 C 1.37872 * 119.99927 * 300.00458 * 5 3 2 8 8 N 1.31513 * 120.00571 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99843 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47397 * 59.99725 * 9 7 5 11 11 H 1.48494 * 109.47294 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47166 * 299.99884 * 9 7 5 13 13 N 1.46500 * 109.47146 * 295.00351 * 3 2 1 14 14 C 1.34779 * 120.00165 * 84.99328 * 13 3 2 15 15 O 1.21282 * 119.99927 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00033 * 179.97438 * 14 13 3 17 17 C 1.53006 * 109.46866 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.46623 * 179.97438 * 17 16 14 19 19 O 1.42905 * 109.46728 * 179.97438 * 18 17 16 20 20 C 1.35905 * 116.99842 * 180.02562 * 19 18 17 21 21 C 1.38752 * 120.05811 * 0.02562 * 20 19 18 22 22 C 1.38117 * 119.94579 * 179.97438 * 21 20 19 23 23 C 1.38280 * 120.05647 * 0.02562 * 22 21 20 24 24 C 1.50703 * 119.94548 * 179.97438 * 23 22 21 25 25 C 1.38245 * 120.11519 * 359.97438 * 23 22 21 26 26 C 1.38169 * 120.05159 * 359.68545 * 25 23 22 27 27 C 1.50696 * 120.03257 * 180.29775 * 26 25 23 28 28 H 1.08996 * 109.47505 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46659 * 300.00160 * 1 2 3 30 30 H 1.08997 * 109.46779 * 59.99665 * 1 2 3 31 31 H 1.09007 * 109.47299 * 240.00431 * 2 1 3 32 32 H 1.09001 * 109.47217 * 120.00536 * 2 1 3 33 33 H 0.96999 * 120.00271 * 180.02562 * 8 7 5 34 34 H 0.96996 * 119.99985 * 264.99903 * 13 3 2 35 35 H 1.08993 * 109.47512 * 60.00410 * 16 14 13 36 36 H 1.09000 * 109.47247 * 300.00119 * 16 14 13 37 37 H 1.09000 * 109.47050 * 299.99952 * 17 16 14 38 38 H 1.09001 * 109.46801 * 60.00064 * 17 16 14 39 39 H 1.09000 * 109.47486 * 299.99829 * 18 17 16 40 40 H 1.09001 * 109.47362 * 60.00551 * 18 17 16 41 41 H 1.08007 * 120.02162 * 0.02562 * 21 20 19 42 42 H 1.08005 * 119.97253 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.47230 * 89.99921 * 24 23 22 44 44 H 1.08999 * 109.47212 * 210.00008 * 24 23 22 45 45 H 1.09003 * 109.47080 * 329.99960 * 24 23 22 46 46 H 1.07998 * 119.97944 * 179.97438 * 25 23 22 47 47 H 1.09004 * 109.46901 * 270.31597 * 27 26 25 48 48 H 1.09007 * 109.47271 * 30.31586 * 27 26 25 49 49 H 1.09001 * 109.47958 * 150.31246 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8782 1.2279 8 7 3.4063 0.3372 2.1733 9 14 6.0050 0.8810 1.3818 10 1 6.4996 2.2812 1.3822 11 1 6.3978 0.2175 2.6508 12 1 6.5976 0.1471 0.2348 13 7 1.6526 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6327 -0.4341 16 6 0.0368 3.3388 -2.6544 17 6 -1.3821 3.8955 -2.5206 18 6 -1.7863 4.5807 -3.8275 19 8 -3.1117 5.1001 -3.7028 20 6 -3.6265 5.7435 -4.7836 21 6 -2.8716 5.8718 -5.9407 22 6 -3.3972 6.5256 -7.0379 23 6 -4.6745 7.0526 -6.9838 24 6 -5.2453 7.7661 -8.1822 25 6 -5.4287 6.9263 -5.8321 26 6 -4.9101 6.2669 -4.7342 27 6 -5.7353 6.1236 -3.4814 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.8294 -0.0606 2.9502 34 1 2.2720 2.1231 -1.9977 35 1 0.0681 2.6148 -3.4686 36 1 0.7282 4.1543 -2.8665 37 1 -2.0737 3.0803 -2.3082 38 1 -1.4129 4.6196 -1.7064 39 1 -1.0946 5.3960 -4.0394 40 1 -1.7553 3.8569 -4.6419 41 1 -1.8740 5.4599 -5.9835 42 1 -2.8101 6.6253 -7.9389 43 1 -5.7644 7.0493 -8.8186 44 1 -5.9467 8.5312 -7.8496 45 1 -4.4376 8.2337 -8.7454 46 1 -6.4259 7.3391 -5.7921 47 1 -5.5573 6.9787 -2.8293 48 1 -6.7921 6.0815 -3.7451 49 1 -5.4534 5.2068 -2.9634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183813722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:12 Heat of formation + Delta-G solvation = -82.722302 kcal Electronic energy + Delta-G solvation = -25904.314425 eV Core-core repulsion = 22216.496118 eV Total energy + Delta-G solvation = -3687.818307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.48211 -39.10812 -37.97100 -35.23550 -33.93996 -33.03616 -32.34965 -31.77325 -30.88930 -27.94546 -27.43775 -26.70975 -25.92067 -23.40443 -22.69926 -21.27194 -20.91754 -20.05329 -19.30309 -18.21673 -17.08514 -16.48861 -16.37404 -15.62713 -15.30842 -15.12350 -15.07440 -14.63071 -14.23048 -14.17818 -13.70747 -13.57840 -13.41425 -13.20927 -12.92700 -12.73063 -12.69253 -12.26574 -12.16278 -12.07118 -11.73946 -11.51875 -11.50753 -11.45155 -11.23568 -11.10385 -10.99200 -10.86321 -10.81814 -10.59051 -10.33217 -10.16016 -9.62992 -9.06814 -9.04953 -8.96727 -8.49917 -8.16161 -7.81210 -6.12609 -4.22274 1.08843 1.19582 2.99596 3.24492 3.30184 3.30973 3.41972 3.47787 4.13355 4.37959 4.50988 4.55094 4.66077 4.83894 4.86141 5.02289 5.03386 5.05167 5.14977 5.18607 5.30052 5.31937 5.38588 5.41839 5.44513 5.53749 5.56236 5.63366 5.68121 5.83028 6.02450 6.11274 6.11648 6.21836 6.31700 6.36199 6.39512 6.45997 6.61087 6.66595 7.03945 7.20241 7.28013 7.37347 7.46874 7.61618 7.73533 7.90347 8.18373 8.67932 8.77611 9.15479 9.45320 10.92594 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.028824 B = 0.001919 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.182419 B =14587.345034 C =15151.171110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.710 5.710 14 C 0.500 3.500 15 O -0.548 6.548 16 C -0.140 4.140 17 C -0.101 4.101 18 C 0.060 3.940 19 O -0.309 6.309 20 C 0.128 3.872 21 C -0.203 4.203 22 C -0.087 4.087 23 C -0.127 4.127 24 C -0.108 4.108 25 C -0.085 4.085 26 C -0.115 4.115 27 C -0.106 4.106 28 H 0.022 0.978 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.030 0.970 32 H 0.098 0.902 33 H 0.265 0.735 34 H 0.388 0.612 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.129 0.871 42 H 0.122 0.878 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.126 0.874 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.306 11.709 -18.939 26.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.358 5.358 14 C 0.285 3.715 15 O -0.427 6.427 16 C -0.180 4.180 17 C -0.138 4.138 18 C -0.015 4.015 19 O -0.222 6.222 20 C 0.083 3.917 21 C -0.222 4.222 22 C -0.105 4.105 23 C -0.127 4.127 24 C -0.165 4.165 25 C -0.103 4.103 26 C -0.116 4.116 27 C -0.163 4.163 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.220 0.780 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.144 0.856 47 H 0.087 0.913 48 H 0.082 0.918 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.905 11.527 -17.851 25.955 hybrid contribution 1.670 -0.101 -0.516 1.751 sum -13.235 11.426 -18.367 25.359 Atomic orbital electron populations 1.21835 0.98345 0.97993 1.01238 1.21934 0.92610 0.99865 1.02219 1.18770 0.94125 0.89175 0.81134 0.93351 1.21197 0.90767 1.39096 1.06286 0.92191 1.24889 0.98577 0.94829 0.95406 1.69882 1.35208 1.37524 1.09303 0.86520 0.84904 0.78287 0.77442 1.20215 1.21133 1.20195 1.46500 1.14687 1.56059 1.18510 1.20238 0.82799 0.79462 0.89006 1.90682 1.51415 1.59929 1.40689 1.21558 0.97219 1.01302 0.97949 1.21204 0.95763 1.01262 0.95619 1.22911 0.81391 0.97510 0.99688 1.86082 1.31774 1.68975 1.35398 1.18862 0.92801 0.93452 0.86605 1.21266 1.01154 1.05823 0.93911 1.20791 0.94938 0.97001 0.97745 1.19785 0.94967 1.01837 0.96151 1.20704 1.00879 0.99493 0.95385 1.20746 0.99526 0.98238 0.91775 1.19295 0.92919 1.01740 0.97631 1.20622 0.98194 1.03061 0.94420 0.95907 0.93149 0.94298 0.95112 0.88338 0.92505 0.78026 0.89402 0.89313 0.90060 0.90013 0.92019 0.92070 0.85351 0.85986 0.91524 0.91769 0.91793 0.85596 0.91349 0.91829 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.52 37.16 0.32 -2.73 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.70 2.24 -69.08 -0.15 6.55 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -13.97 8.73 -34.44 -0.30 -14.27 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.61 11.29 55.43 0.63 -23.98 16 9 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.71 -14.18 5.02 -54.93 -0.28 -14.45 16 14 C 0.50 9.36 6.40 -10.99 -0.07 9.29 16 15 O -0.55 -12.38 13.12 5.56 0.07 -12.31 16 16 C -0.14 -1.79 5.70 -27.88 -0.16 -1.95 16 17 C -0.10 -1.30 4.87 -26.73 -0.13 -1.43 16 18 C 0.06 0.64 4.74 37.16 0.18 0.82 16 19 O -0.31 -3.88 9.18 -19.44 -0.18 -4.06 16 20 C 0.13 1.50 6.66 -39.21 -0.26 1.24 16 21 C -0.20 -2.05 9.04 -39.44 -0.36 -2.41 16 22 C -0.09 -0.78 9.69 -39.61 -0.38 -1.16 16 23 C -0.13 -1.11 5.88 -104.60 -0.62 -1.72 16 24 C -0.11 -0.65 10.01 36.01 0.36 -0.29 16 25 C -0.08 -0.78 9.35 -39.60 -0.37 -1.15 16 26 C -0.12 -1.24 5.89 -104.47 -0.62 -1.85 16 27 C -0.11 -1.00 9.79 36.00 0.35 -0.65 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 30 H 0.04 0.83 5.65 -51.93 -0.29 0.54 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.39 6.64 8.54 -40.82 -0.35 6.29 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 38 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 39 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 40 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 41 H 0.13 1.10 6.30 -52.48 -0.33 0.77 16 42 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 45 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 46 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 49 H 0.07 0.77 7.53 -51.93 -0.39 0.38 16 LS Contribution 393.92 15.07 5.94 5.94 Total: -1.00 -30.80 393.92 -9.59 -40.39 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -8.29 Total: 6.30 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.45 Total: -13.27 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.35 Total: -38.44 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.11 Total: -16.36 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.80 -9.59 -40.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183813722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.337 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds