Wall clock time and date at job start Tue Mar 31 2020 12:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1 5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1 6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2 7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2 8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47099 * 89.99658 * 9 7 5 11 11 H 1.48495 * 109.47152 * 209.99607 * 9 7 5 12 12 H 1.48495 * 109.47111 * 329.99717 * 9 7 5 13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1 14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 3 17 17 C 1.52992 * 109.47274 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.47231 * 180.02562 * 17 16 14 19 19 O 1.42901 * 109.47396 * 179.97438 * 18 17 16 20 20 C 1.42904 * 113.99901 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.46613 * 180.02562 * 20 19 18 22 22 C 1.50698 * 109.46597 * 179.97438 * 21 20 19 23 23 C 1.38239 * 120.00027 * 269.72059 * 22 21 20 24 24 C 1.38240 * 120.00107 * 179.76528 * 23 22 21 25 25 C 1.38237 * 119.99762 * 0.51432 * 24 23 22 26 26 C 1.38240 * 120.00013 * 359.74523 * 25 24 23 27 27 C 1.38229 * 120.00111 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.46886 * 299.99799 * 1 2 3 29 29 H 1.08997 * 109.46969 * 59.99876 * 1 2 3 30 30 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46841 * 240.00223 * 2 1 3 32 32 H 1.09000 * 109.47546 * 120.00589 * 2 1 3 33 33 H 0.96994 * 119.99652 * 180.02562 * 8 7 5 34 34 H 0.97005 * 119.99811 * 95.00317 * 13 3 2 35 35 H 1.09004 * 109.46762 * 300.00389 * 16 14 13 36 36 H 1.08998 * 109.46924 * 59.99727 * 16 14 13 37 37 H 1.09004 * 109.47116 * 299.99649 * 17 16 14 38 38 H 1.08993 * 109.47352 * 59.99893 * 17 16 14 39 39 H 1.08999 * 109.47343 * 300.00090 * 18 17 16 40 40 H 1.09010 * 109.47369 * 59.99437 * 18 17 16 41 41 H 1.09003 * 109.46646 * 299.99345 * 20 19 18 42 42 H 1.08998 * 109.47261 * 59.99982 * 20 19 18 43 43 H 1.08994 * 109.47124 * 299.99288 * 21 20 19 44 44 H 1.08998 * 109.47433 * 59.99952 * 21 20 19 45 45 H 1.07998 * 119.99714 * 0.02562 * 23 22 21 46 46 H 1.07995 * 120.00089 * 180.23357 * 24 23 22 47 47 H 1.08001 * 120.00036 * 179.71810 * 25 24 23 48 48 H 1.07997 * 120.00009 * 179.97438 * 26 25 24 49 49 H 1.07996 * 120.00143 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8800 -1.3812 10 1 6.5538 -0.3521 -0.7599 11 1 6.3835 0.9214 -2.8165 12 1 6.5576 2.0719 -0.6890 13 7 1.6525 2.0974 1.2519 14 6 0.4373 2.6692 1.3651 15 8 -0.3355 2.6412 0.4309 16 6 0.0388 3.3434 2.6527 17 6 -1.3778 3.9050 2.5171 18 6 -1.7821 4.5901 3.8240 19 8 -3.1051 5.1152 3.6972 20 6 -3.5815 5.7797 4.8693 21 6 -4.9995 6.2979 4.6208 22 6 -5.5021 6.9980 5.8570 23 6 -6.1863 6.2861 6.8245 24 6 -6.6432 6.9274 7.9608 25 6 -6.4251 8.2826 8.1245 26 6 -5.7456 8.9955 7.1544 27 6 -5.2837 8.3532 6.0210 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8293 -0.0617 -2.9496 34 1 2.2720 2.1230 1.9979 35 1 0.0655 2.6181 3.4660 36 1 0.7332 4.1557 2.8675 37 1 -1.4048 4.6303 1.7038 38 1 -2.0718 3.0925 2.3026 39 1 -1.7550 3.8653 4.6377 40 1 -1.0879 5.4028 4.0383 41 1 -3.5921 5.0796 5.7047 42 1 -2.9244 6.6168 5.1048 43 1 -4.9893 6.9977 3.7853 44 1 -5.6564 5.4605 4.3855 45 1 -6.3602 5.2282 6.6947 46 1 -7.1743 6.3705 8.7185 47 1 -6.7860 8.7845 9.0101 48 1 -5.5757 10.0543 7.2821 49 1 -4.7533 8.9102 5.2629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183910926.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:27 Heat of formation + Delta-G solvation = -88.136209 kcal Electronic energy + Delta-G solvation = -25228.479338 eV Core-core repulsion = 21540.426267 eV Total energy + Delta-G solvation = -3688.053071 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.72799 -39.08835 -38.08100 -35.19945 -34.15406 -32.94045 -32.30720 -31.27101 -30.86132 -29.02755 -27.37471 -26.07572 -23.73148 -23.04498 -22.95608 -21.86374 -21.14745 -20.00011 -19.25880 -17.41031 -17.05315 -16.60000 -16.47702 -15.73127 -15.59819 -15.38682 -15.18668 -14.96358 -14.56225 -14.15168 -13.95213 -13.73208 -13.37414 -13.18452 -12.95177 -12.73999 -12.67393 -12.05516 -11.87934 -11.76235 -11.63031 -11.41764 -11.38579 -11.23461 -11.22379 -10.98722 -10.96455 -10.80751 -10.69736 -10.30308 -10.13409 -9.72982 -9.61082 -9.30328 -9.10568 -9.03197 -8.91263 -8.48324 -7.77524 -6.10997 -4.20454 0.94226 1.01608 3.24429 3.25876 3.31554 3.33513 3.47548 3.53840 4.19155 4.40597 4.44816 4.54709 4.65379 4.76566 4.78279 4.91141 5.00983 5.12246 5.14201 5.16216 5.16564 5.20250 5.25870 5.44039 5.48108 5.53569 5.58043 5.66620 5.70219 5.77504 5.90398 6.08204 6.13390 6.24351 6.26194 6.41214 6.41937 6.48642 6.62053 6.68988 7.06229 7.08406 7.22901 7.40104 7.50463 7.64079 7.76310 7.92942 8.20604 8.71806 8.80314 9.19957 9.47385 10.94269 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.035004 B = 0.001582 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.720251 B =17696.872454 C =18099.630160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.711 5.711 14 C 0.500 3.500 15 O -0.549 6.549 16 C -0.140 4.140 17 C -0.100 4.100 18 C 0.064 3.936 19 O -0.387 6.387 20 C 0.069 3.931 21 C -0.081 4.081 22 C -0.081 4.081 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.125 4.125 26 C -0.119 4.119 27 C -0.115 4.115 28 H 0.038 0.962 29 H 0.049 0.951 30 H 0.022 0.978 31 H 0.098 0.902 32 H 0.030 0.970 33 H 0.264 0.736 34 H 0.387 0.613 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.049 0.951 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.122 0.878 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.013 13.065 20.343 28.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.359 5.359 14 C 0.285 3.715 15 O -0.428 6.428 16 C -0.181 4.181 17 C -0.138 4.138 18 C -0.012 4.012 19 O -0.306 6.306 20 C -0.008 4.008 21 C -0.118 4.118 22 C -0.081 4.081 23 C -0.133 4.133 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.137 4.137 27 C -0.133 4.133 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.116 0.884 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.219 0.781 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.141 0.859 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.140 0.860 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.638 12.912 19.286 28.557 hybrid contribution 1.524 -0.015 0.618 1.644 sum -15.114 12.897 19.904 28.124 Atomic orbital electron populations 1.21832 0.98348 0.97979 1.01252 1.21931 0.92617 0.99878 1.02199 1.18770 0.94107 0.89183 0.81212 0.93347 1.21245 0.90811 1.38961 1.06235 0.92146 1.24891 0.98556 0.94862 0.95400 1.69899 1.35080 1.37599 1.09366 0.86464 0.84959 0.78394 0.77368 1.20576 1.21084 1.19912 1.46503 1.14891 1.55987 1.18477 1.20297 0.82728 0.79388 0.89119 1.90675 1.51454 1.59999 1.40643 1.21576 0.97656 1.01163 0.97672 1.21184 0.95359 1.01094 0.96201 1.22561 0.83260 0.96822 0.98573 1.87880 1.31539 1.74657 1.36564 1.22395 0.94507 0.95813 0.88053 1.20490 0.95399 1.00652 0.95298 1.19777 0.98341 0.93972 0.95973 1.21128 0.98309 0.99994 0.93868 1.21172 1.00004 0.94870 0.97690 1.21183 0.99353 0.94526 0.99217 1.21171 0.98371 0.99975 0.94214 1.21126 0.99974 0.94156 0.98036 0.94284 0.93151 0.95916 0.88352 0.95119 0.92589 0.78056 0.89571 0.89481 0.90370 0.90404 0.93419 0.93395 0.93338 0.93317 0.89941 0.89951 0.85891 0.86017 0.86146 0.86014 0.85885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.52 37.16 0.32 -2.77 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.77 2.24 -69.08 -0.15 6.61 16 4 H 0.05 1.42 7.57 -51.93 -0.39 1.03 16 5 C -0.53 -14.08 8.73 -34.44 -0.30 -14.38 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.76 11.29 55.43 0.63 -24.14 16 9 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.71 -14.48 5.02 -54.93 -0.28 -14.75 16 14 C 0.50 9.61 6.40 -10.98 -0.07 9.54 16 15 O -0.55 -12.68 13.15 5.56 0.07 -12.60 16 16 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 17 C -0.10 -1.37 4.87 -26.74 -0.13 -1.50 16 18 C 0.06 0.71 5.94 37.16 0.22 0.93 16 19 O -0.39 -4.70 10.34 -35.23 -0.36 -5.06 16 20 C 0.07 0.64 5.92 37.16 0.22 0.86 16 21 C -0.08 -0.67 5.72 -27.88 -0.16 -0.83 16 22 C -0.08 -0.65 5.13 -104.62 -0.54 -1.18 16 23 C -0.11 -0.86 9.70 -39.58 -0.38 -1.25 16 24 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 25 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 26 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 27 C -0.11 -0.87 9.70 -39.58 -0.38 -1.25 16 28 H 0.04 0.85 5.67 -51.93 -0.29 0.55 16 29 H 0.05 1.21 7.85 -51.93 -0.41 0.81 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.39 6.79 8.54 -40.82 -0.35 6.44 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 38 H 0.08 1.18 8.10 -51.93 -0.42 0.75 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 41 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 44 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 45 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 47 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 48 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 49 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 399.54 15.07 6.02 6.02 Total: -1.00 -31.15 399.54 -10.37 -41.52 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -8.47 Total: 5.94 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -2.95 Total: -12.48 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.35 Total: -38.89 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.29 Total: -17.66 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.15 -10.37 -41.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183910926.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.620 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds