Wall clock time and date at job start Tue Mar 31 2020 12:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1 5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1 6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2 7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2 8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47099 * 89.99658 * 9 7 5 11 11 H 1.48495 * 109.47152 * 209.99607 * 9 7 5 12 12 H 1.48495 * 109.47111 * 329.99717 * 9 7 5 13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1 14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 3 17 17 C 1.52992 * 109.47274 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.47231 * 180.02562 * 17 16 14 19 19 O 1.42901 * 109.47396 * 179.97438 * 18 17 16 20 20 C 1.42904 * 113.99901 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.46613 * 180.02562 * 20 19 18 22 22 C 1.50698 * 109.46597 * 179.97438 * 21 20 19 23 23 C 1.38239 * 120.00027 * 269.72059 * 22 21 20 24 24 C 1.38240 * 120.00107 * 179.76528 * 23 22 21 25 25 C 1.38237 * 119.99762 * 0.51432 * 24 23 22 26 26 C 1.38240 * 120.00013 * 359.74523 * 25 24 23 27 27 C 1.38229 * 120.00111 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.46886 * 299.99799 * 1 2 3 29 29 H 1.08997 * 109.46969 * 59.99876 * 1 2 3 30 30 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46841 * 240.00223 * 2 1 3 32 32 H 1.09000 * 109.47546 * 120.00589 * 2 1 3 33 33 H 0.96994 * 119.99652 * 180.02562 * 8 7 5 34 34 H 0.97005 * 119.99811 * 95.00317 * 13 3 2 35 35 H 1.09004 * 109.46762 * 300.00389 * 16 14 13 36 36 H 1.08998 * 109.46924 * 59.99727 * 16 14 13 37 37 H 1.09004 * 109.47116 * 299.99649 * 17 16 14 38 38 H 1.08993 * 109.47352 * 59.99893 * 17 16 14 39 39 H 1.08999 * 109.47343 * 300.00090 * 18 17 16 40 40 H 1.09010 * 109.47369 * 59.99437 * 18 17 16 41 41 H 1.09003 * 109.46646 * 299.99345 * 20 19 18 42 42 H 1.08998 * 109.47261 * 59.99982 * 20 19 18 43 43 H 1.08994 * 109.47124 * 299.99288 * 21 20 19 44 44 H 1.08998 * 109.47433 * 59.99952 * 21 20 19 45 45 H 1.07998 * 119.99714 * 0.02562 * 23 22 21 46 46 H 1.07995 * 120.00089 * 180.23357 * 24 23 22 47 47 H 1.08001 * 120.00036 * 179.71810 * 25 24 23 48 48 H 1.07997 * 120.00009 * 179.97438 * 26 25 24 49 49 H 1.07996 * 120.00143 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8800 -1.3812 10 1 6.5538 -0.3521 -0.7599 11 1 6.3835 0.9214 -2.8165 12 1 6.5576 2.0719 -0.6890 13 7 1.6525 2.0974 1.2519 14 6 0.4373 2.6692 1.3651 15 8 -0.3355 2.6412 0.4309 16 6 0.0388 3.3434 2.6527 17 6 -1.3778 3.9050 2.5171 18 6 -1.7821 4.5901 3.8240 19 8 -3.1051 5.1152 3.6972 20 6 -3.5815 5.7797 4.8693 21 6 -4.9995 6.2979 4.6208 22 6 -5.5021 6.9980 5.8570 23 6 -6.1863 6.2861 6.8245 24 6 -6.6432 6.9274 7.9608 25 6 -6.4251 8.2826 8.1245 26 6 -5.7456 8.9955 7.1544 27 6 -5.2837 8.3532 6.0210 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8293 -0.0617 -2.9496 34 1 2.2720 2.1230 1.9979 35 1 0.0655 2.6181 3.4660 36 1 0.7332 4.1557 2.8675 37 1 -1.4048 4.6303 1.7038 38 1 -2.0718 3.0925 2.3026 39 1 -1.7550 3.8653 4.6377 40 1 -1.0879 5.4028 4.0383 41 1 -3.5921 5.0796 5.7047 42 1 -2.9244 6.6168 5.1048 43 1 -4.9893 6.9977 3.7853 44 1 -5.6564 5.4605 4.3855 45 1 -6.3602 5.2282 6.6947 46 1 -7.1743 6.3705 8.7185 47 1 -6.7860 8.7845 9.0101 48 1 -5.5757 10.0543 7.2821 49 1 -4.7533 8.9102 5.2629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183910926.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:26 Heat of formation + Delta-G solvation = -105.496188 kcal Electronic energy + Delta-G solvation = -25229.232123 eV Core-core repulsion = 21540.426267 eV Total energy + Delta-G solvation = -3688.805857 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.68974 -40.25157 -38.94118 -37.00277 -35.04212 -34.26882 -33.85602 -32.66802 -31.76647 -29.79326 -29.04428 -27.35832 -24.96406 -24.36102 -23.45692 -23.04071 -21.88145 -21.56133 -20.97999 -18.90811 -17.89075 -17.46717 -17.40604 -17.27695 -16.99728 -16.58379 -16.03435 -15.93523 -15.85147 -15.43928 -15.08776 -14.62251 -14.55531 -14.26884 -13.98740 -13.91116 -13.65245 -13.52122 -13.23229 -13.16958 -13.02113 -12.78252 -12.65384 -12.53414 -12.40424 -12.15956 -12.03244 -11.97896 -11.88130 -11.83890 -11.67091 -11.57005 -11.03151 -10.62097 -10.53367 -10.46645 -9.81657 -9.63546 -9.57152 -8.14799 -6.32308 0.41605 0.50392 1.45121 1.45835 1.56170 1.95095 2.35022 2.49431 2.83188 3.01868 3.14672 3.89863 3.92945 3.94358 4.04585 4.12596 4.20296 4.20524 4.31515 4.39863 4.48126 4.49681 4.51976 4.56461 4.57490 4.58540 4.63921 4.65416 4.73450 4.82180 4.93978 4.97935 5.08354 5.17750 5.18890 5.19328 5.26936 5.33501 5.45688 5.58006 5.58266 5.63838 5.67480 5.71748 5.81981 5.96854 6.12760 6.19392 6.29291 6.77051 7.07141 7.35806 7.68326 8.90469 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.035004 B = 0.001582 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.720251 B =17696.872454 C =18099.630160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.276 3.724 4 H -0.005 1.005 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.708 5.708 14 C 0.492 3.508 15 O -0.594 6.594 16 C -0.124 4.124 17 C -0.096 4.096 18 C 0.069 3.931 19 O -0.413 6.413 20 C 0.069 3.931 21 C -0.077 4.077 22 C -0.092 4.092 23 C -0.127 4.127 24 C -0.127 4.127 25 C -0.131 4.131 26 C -0.127 4.127 27 C -0.128 4.128 28 H 0.045 0.955 29 H 0.022 0.978 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.264 0.736 34 H 0.405 0.595 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.130 0.870 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.139 0.861 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.289 13.777 23.383 31.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.172 3.828 4 H 0.013 0.987 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.357 5.357 14 C 0.280 3.720 15 O -0.475 6.475 16 C -0.164 4.164 17 C -0.135 4.135 18 C -0.007 4.007 19 O -0.333 6.333 20 C -0.007 4.007 21 C -0.114 4.114 22 C -0.092 4.092 23 C -0.145 4.145 24 C -0.145 4.145 25 C -0.149 4.149 26 C -0.145 4.145 27 C -0.146 4.146 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.239 0.761 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.148 0.852 46 H 0.157 0.843 47 H 0.158 0.842 48 H 0.157 0.843 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.911 13.639 22.377 30.658 hybrid contribution 1.217 -0.195 -0.329 1.276 sum -14.694 13.445 22.048 29.711 Atomic orbital electron populations 1.21670 0.97042 0.99055 1.00247 1.21781 0.93687 0.99294 1.01237 1.18339 0.93558 0.89161 0.81739 0.98728 1.21608 0.91526 1.38799 1.06648 0.90946 1.25789 1.03310 0.94453 0.95056 1.70060 1.37048 1.38423 1.09914 0.85369 0.79152 0.78864 0.77080 1.19674 1.21405 1.18867 1.46278 1.15960 1.56033 1.17432 1.21343 0.81539 0.78453 0.90642 1.90665 1.52590 1.61404 1.42879 1.21532 0.97821 1.02275 0.94758 1.21094 0.95191 0.99991 0.97190 1.22513 0.83319 0.97714 0.97187 1.87846 1.32128 1.75144 1.38197 1.22502 0.94868 0.96030 0.87307 1.20432 0.95051 1.00418 0.95527 1.19801 0.99094 0.94330 0.96004 1.21319 0.98505 1.00546 0.94172 1.21456 0.99882 0.95295 0.97841 1.21506 0.98910 0.94627 0.99834 1.21453 0.98094 1.00983 0.93963 1.21314 1.00384 0.94188 0.98691 0.93560 0.95832 0.93660 0.91211 0.93955 0.92684 0.76054 0.86194 0.86458 0.92819 0.92565 0.91411 0.91573 0.92507 0.92574 0.90408 0.90350 0.85204 0.84273 0.84167 0.84305 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.52 71.98 0.61 -5.00 16 2 C -0.12 -6.01 5.45 30.59 0.17 -5.84 16 3 C 0.28 14.16 2.24 44.24 0.10 14.26 16 4 H -0.01 -0.32 7.57 -2.39 -0.02 -0.34 16 5 C -0.55 -28.89 8.73 25.60 0.22 -28.66 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 7 C 0.01 0.75 5.29 84.65 0.45 1.19 16 8 N -0.92 -52.77 11.29 21.45 0.24 -52.53 16 9 Si 0.97 42.02 29.54 68.60 2.03 44.04 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 12 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 13 N -0.71 -28.39 5.02 -446.09 -2.24 -30.63 16 14 C 0.49 18.71 6.40 87.66 0.56 19.28 16 15 O -0.59 -28.27 13.15 -3.03 -0.04 -28.31 16 16 C -0.12 -3.03 5.70 29.85 0.17 -2.86 16 17 C -0.10 -2.53 4.87 30.59 0.15 -2.38 16 18 C 0.07 1.36 5.94 71.98 0.43 1.79 16 19 O -0.41 -9.60 10.34 -148.98 -1.54 -11.14 16 20 C 0.07 1.19 5.92 71.98 0.43 1.62 16 21 C -0.08 -1.25 5.72 29.85 0.17 -1.08 16 22 C -0.09 -1.41 5.13 -19.86 -0.10 -1.51 16 23 C -0.13 -1.79 9.70 22.27 0.22 -1.58 16 24 C -0.13 -1.53 10.05 22.27 0.22 -1.31 16 25 C -0.13 -1.49 10.05 22.27 0.22 -1.27 16 26 C -0.13 -1.55 10.05 22.27 0.22 -1.32 16 27 C -0.13 -1.81 9.70 22.27 0.22 -1.60 16 28 H 0.05 2.01 5.67 -2.39 -0.01 2.00 16 29 H 0.02 1.16 7.85 -2.39 -0.02 1.14 16 30 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.07 3.89 5.95 -2.38 -0.01 3.88 16 32 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 34 H 0.40 13.37 8.54 -92.70 -0.79 12.57 16 35 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.05 1.65 8.10 -2.39 -0.02 1.63 16 38 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 44 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 45 H 0.13 1.53 8.06 -2.91 -0.02 1.50 16 46 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 47 H 0.14 0.96 8.06 -2.91 -0.02 0.93 16 48 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 49 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -70.12 399.54 3.03 -67.09 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.12 Total: 27.75 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: 4.46 Total: -16.28 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -2.00 Total: -83.16 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -1.58 Total: -39.44 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -70.12 3.03 -67.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183910926.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.406 kcal (2) G-P(sol) polarization free energy of solvation -70.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds