Wall clock time and date at job start Tue Mar 31 2020 12:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47013 * 2 1 4 4 H 1.09004 * 109.46930 * 305.00026 * 3 2 1 5 5 C 1.50703 * 109.47292 * 185.00051 * 3 2 1 6 6 H 1.07994 * 119.99399 * 240.00067 * 5 3 2 7 7 C 1.37874 * 119.99789 * 59.99693 * 5 3 2 8 8 N 1.31518 * 120.00144 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46632 * 90.00476 * 9 7 5 11 11 H 1.48496 * 109.46690 * 210.00029 * 9 7 5 12 12 H 1.48498 * 109.47171 * 330.00226 * 9 7 5 13 13 N 1.46506 * 109.47035 * 64.99796 * 3 2 1 14 14 C 1.34767 * 120.00003 * 274.99925 * 13 3 2 15 15 O 1.21281 * 120.00199 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99889 * 179.97438 * 14 13 3 17 17 C 1.50704 * 109.47159 * 180.02562 * 16 14 13 18 18 C 1.38265 * 119.94340 * 269.73184 * 17 16 14 19 19 C 1.38148 * 120.05503 * 179.72780 * 18 17 16 20 20 C 1.38737 * 119.94013 * 0.56402 * 19 18 17 21 21 O 1.35901 * 120.05411 * 179.68620 * 20 19 18 22 22 C 1.42901 * 116.99857 * 0.02562 * 21 20 19 23 23 C 1.53003 * 109.47020 * 180.02562 * 22 21 20 24 24 C 1.53004 * 109.47021 * 175.00200 * 23 22 21 25 25 C 1.52997 * 109.47028 * 295.00555 * 23 22 21 26 26 C 1.38728 * 119.88893 * 359.70851 * 20 19 18 27 27 C 1.38148 * 119.94680 * 359.97438 * 26 20 19 28 28 H 1.08988 * 109.47502 * 60.00190 * 1 2 3 29 29 H 1.09001 * 109.46690 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47116 * 299.99803 * 1 2 3 31 31 H 1.08997 * 109.47159 * 240.00180 * 2 1 3 32 32 H 1.09005 * 109.47284 * 119.99696 * 2 1 3 33 33 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 34 34 H 0.96996 * 119.99678 * 95.00711 * 13 3 2 35 35 H 1.08994 * 109.47394 * 300.00422 * 16 14 13 36 36 H 1.09001 * 109.46828 * 60.00478 * 16 14 13 37 37 H 1.07997 * 119.97291 * 359.97438 * 18 17 16 38 38 H 1.07997 * 120.03041 * 180.24923 * 19 18 17 39 39 H 1.09000 * 109.47488 * 300.00605 * 22 21 20 40 40 H 1.09005 * 109.46943 * 60.00583 * 22 21 20 41 41 H 1.08997 * 109.46758 * 55.00175 * 23 22 21 42 42 H 1.09005 * 109.46841 * 60.00000 * 24 23 22 43 43 H 1.08996 * 109.46589 * 179.97438 * 24 23 22 44 44 H 1.08996 * 109.47058 * 300.00059 * 24 23 22 45 45 H 1.09003 * 109.47278 * 180.02562 * 25 23 22 46 46 H 1.09005 * 109.47293 * 299.99638 * 25 23 22 47 47 H 1.09001 * 109.47498 * 59.99616 * 25 23 22 48 48 H 1.07997 * 120.02603 * 179.97438 * 26 20 19 49 49 H 1.07994 * 119.97287 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0049 0.8814 -1.3818 10 1 6.5548 -0.3500 -0.7602 11 1 6.3828 0.9225 -2.8173 12 1 6.5569 2.0740 -0.6902 13 7 1.6523 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6319 0.4344 16 6 0.0362 3.3376 2.6549 17 6 -1.3618 3.8851 2.5235 18 6 -1.5576 5.1745 2.0642 19 6 -2.8383 5.6767 1.9375 20 6 -3.9278 4.8902 2.2827 21 8 -5.1884 5.3843 2.1651 22 6 -5.3183 6.7216 1.6786 23 6 -6.7995 7.0998 1.6156 24 6 -6.9338 8.5701 1.2144 25 6 -7.5064 6.2220 0.5808 26 6 -3.7283 3.5989 2.7487 27 6 -2.4459 3.0990 2.8673 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8292 -0.0603 -2.9502 34 1 2.2719 2.1233 1.9977 35 1 0.0672 2.6130 3.4685 36 1 0.7275 4.1530 2.8679 37 1 -0.7089 5.7880 1.8005 38 1 -2.9910 6.6825 1.5749 39 1 -4.7975 7.4046 2.3496 40 1 -4.8830 6.7894 0.6815 41 1 -7.2553 6.9470 2.5938 42 1 -6.4779 8.7229 0.2361 43 1 -7.9891 8.8393 1.1691 44 1 -6.4302 9.1954 1.9516 45 1 -8.5616 6.4917 0.5356 46 1 -7.0505 6.3748 -0.3975 47 1 -7.4107 5.1745 0.8667 48 1 -4.5748 2.9849 3.0184 49 1 -2.2901 2.0936 3.2296 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183939691.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:35 Heat of formation + Delta-G solvation = -77.291973 kcal Electronic energy + Delta-G solvation = -26426.857049 eV Core-core repulsion = 22739.274219 eV Total energy + Delta-G solvation = -3687.582830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.24953 -39.07786 -37.68845 -35.55574 -34.93093 -32.40986 -31.90005 -30.95341 -30.69346 -27.75215 -27.49210 -26.89254 -25.87543 -23.02095 -22.76202 -21.55804 -20.45477 -20.04089 -19.23994 -18.21106 -17.05777 -16.46478 -16.00410 -15.82447 -15.40026 -14.98866 -14.83161 -14.52791 -14.42670 -14.06177 -13.98881 -13.36230 -13.30095 -13.04857 -12.82268 -12.66087 -12.59178 -12.35258 -12.25084 -11.66773 -11.50415 -11.44892 -11.34109 -11.26905 -11.21115 -11.09670 -10.96465 -10.79446 -10.76437 -10.64243 -10.29927 -10.13249 -9.60084 -9.03313 -8.92747 -8.87116 -8.48157 -7.95735 -7.75754 -6.10754 -4.20132 1.46953 1.52869 3.08562 3.24430 3.31463 3.33407 3.49776 3.79048 4.26304 4.42849 4.47635 4.49697 4.72482 4.87806 4.90508 4.95749 5.09951 5.10741 5.20167 5.21109 5.31550 5.40681 5.46924 5.50834 5.56889 5.60004 5.70101 5.71759 5.75841 5.81795 5.94244 6.00526 6.13737 6.35556 6.42505 6.43968 6.49426 6.69966 6.76582 6.85407 7.07293 7.23940 7.41080 7.43538 7.51674 7.64725 7.77376 7.93636 8.21201 8.73095 8.81306 9.21986 9.47828 10.94456 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.023465 B = 0.002236 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.958897 B =12517.999405 C =12600.205798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.065 3.935 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.712 5.712 14 C 0.500 3.500 15 O -0.540 6.540 16 C -0.104 4.104 17 C -0.088 4.088 18 C -0.066 4.066 19 C -0.207 4.207 20 C 0.122 3.878 21 O -0.316 6.316 22 C 0.063 3.937 23 C -0.095 4.095 24 C -0.146 4.146 25 C -0.148 4.148 26 C -0.151 4.151 27 C -0.066 4.066 28 H 0.049 0.951 29 H 0.021 0.979 30 H 0.039 0.961 31 H 0.098 0.902 32 H 0.030 0.970 33 H 0.264 0.736 34 H 0.387 0.613 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.127 0.873 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.014 12.150 11.091 22.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.360 5.360 14 C 0.285 3.715 15 O -0.418 6.418 16 C -0.144 4.144 17 C -0.089 4.089 18 C -0.084 4.084 19 C -0.225 4.225 20 C 0.077 3.923 21 O -0.230 6.230 22 C -0.012 4.012 23 C -0.113 4.113 24 C -0.204 4.204 25 C -0.205 4.205 26 C -0.169 4.169 27 C -0.084 4.084 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.116 0.884 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.219 0.781 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.083 0.917 48 H 0.145 0.855 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.727 11.935 10.237 22.957 hybrid contribution 1.545 0.109 0.083 1.551 sum -15.182 12.044 10.320 21.955 Atomic orbital electron populations 1.21828 0.98324 0.97913 1.01274 1.21930 0.92614 0.99894 1.02157 1.18750 0.94048 0.89135 0.81171 0.93447 1.21245 0.90822 1.38893 1.06212 0.92137 1.24896 0.98544 0.94895 0.95428 1.69900 1.35068 1.37658 1.09330 0.86469 0.84987 0.78405 0.77352 1.20575 1.21109 1.19898 1.46498 1.14724 1.56311 1.18471 1.20266 0.82743 0.79534 0.88984 1.90691 1.51284 1.59412 1.40460 1.20706 0.94474 1.01321 0.97941 1.19246 0.94217 0.94125 1.01288 1.20765 0.96290 0.95086 0.96284 1.21118 0.92770 1.00682 1.07975 1.18925 0.83133 0.93429 0.96807 1.86013 1.25199 1.30584 1.81227 1.22875 0.97524 0.81842 0.98975 1.21121 0.93613 0.95699 1.00869 1.21787 1.02387 0.94438 1.01755 1.21825 0.99861 1.00384 0.98433 1.20311 0.97618 0.93613 1.05395 1.20781 0.91121 0.98882 0.97645 0.93228 0.95987 0.94221 0.88408 0.95130 0.92603 0.78081 0.88756 0.88751 0.86012 0.85902 0.92208 0.91993 0.90181 0.92262 0.91763 0.92378 0.92584 0.92625 0.91746 0.85535 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.79 2.24 -69.08 -0.15 6.63 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.02 8.73 -34.44 -0.30 -14.32 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.80 11.29 55.43 0.63 -24.17 16 9 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.71 -14.42 5.02 -54.92 -0.28 -14.70 16 14 C 0.50 9.62 6.39 -10.99 -0.07 9.55 16 15 O -0.54 -12.53 13.17 5.56 0.07 -12.46 16 16 C -0.10 -1.45 5.83 -29.03 -0.17 -1.62 16 17 C -0.09 -1.28 4.37 -104.60 -0.46 -1.74 16 18 C -0.07 -0.93 9.69 -39.60 -0.38 -1.31 16 19 C -0.21 -2.72 9.04 -39.43 -0.36 -3.07 16 20 C 0.12 1.66 6.69 -39.22 -0.26 1.40 16 21 O -0.32 -3.91 9.67 -19.43 -0.19 -4.10 16 22 C 0.06 0.59 4.12 37.16 0.15 0.74 16 23 C -0.09 -0.72 3.16 -90.62 -0.29 -1.01 16 24 C -0.15 -0.85 9.19 37.16 0.34 -0.51 16 25 C -0.15 -1.17 9.09 37.16 0.34 -0.84 16 26 C -0.15 -2.05 9.99 -39.43 -0.39 -2.44 16 27 C -0.07 -0.92 9.69 -39.60 -0.38 -1.31 16 28 H 0.05 1.21 7.85 -51.94 -0.41 0.80 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 31 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.39 6.74 8.54 -40.82 -0.35 6.39 16 35 H 0.09 1.09 8.08 -51.93 -0.42 0.67 16 36 H 0.09 1.11 8.08 -51.93 -0.42 0.69 16 37 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.12 1.34 6.30 -52.49 -0.33 1.01 16 39 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 40 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.60 7.82 -51.93 -0.41 0.19 16 48 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 49 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 394.03 15.07 5.94 5.94 Total: -1.00 -31.21 394.03 -9.47 -40.69 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -8.32 Total: 7.44 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -2.31 Total: -14.19 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.35 Total: -38.87 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.11 Total: -16.56 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.21 -9.47 -40.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183939691.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.606 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds