Wall clock time and date at job start Tue Mar 31 2020 12:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47013 * 2 1 4 4 H 1.09004 * 109.46930 * 305.00026 * 3 2 1 5 5 C 1.50703 * 109.47292 * 185.00051 * 3 2 1 6 6 H 1.07994 * 119.99399 * 240.00067 * 5 3 2 7 7 C 1.37874 * 119.99789 * 59.99693 * 5 3 2 8 8 N 1.31518 * 120.00144 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46632 * 90.00476 * 9 7 5 11 11 H 1.48496 * 109.46690 * 210.00029 * 9 7 5 12 12 H 1.48498 * 109.47171 * 330.00226 * 9 7 5 13 13 N 1.46506 * 109.47035 * 64.99796 * 3 2 1 14 14 C 1.34767 * 120.00003 * 274.99925 * 13 3 2 15 15 O 1.21281 * 120.00199 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99889 * 179.97438 * 14 13 3 17 17 C 1.50704 * 109.47159 * 180.02562 * 16 14 13 18 18 C 1.38265 * 119.94340 * 269.73184 * 17 16 14 19 19 C 1.38148 * 120.05503 * 179.72780 * 18 17 16 20 20 C 1.38737 * 119.94013 * 0.56402 * 19 18 17 21 21 O 1.35901 * 120.05411 * 179.68620 * 20 19 18 22 22 C 1.42901 * 116.99857 * 0.02562 * 21 20 19 23 23 C 1.53003 * 109.47020 * 180.02562 * 22 21 20 24 24 C 1.53004 * 109.47021 * 175.00200 * 23 22 21 25 25 C 1.52997 * 109.47028 * 295.00555 * 23 22 21 26 26 C 1.38728 * 119.88893 * 359.70851 * 20 19 18 27 27 C 1.38148 * 119.94680 * 359.97438 * 26 20 19 28 28 H 1.08988 * 109.47502 * 60.00190 * 1 2 3 29 29 H 1.09001 * 109.46690 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47116 * 299.99803 * 1 2 3 31 31 H 1.08997 * 109.47159 * 240.00180 * 2 1 3 32 32 H 1.09005 * 109.47284 * 119.99696 * 2 1 3 33 33 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 34 34 H 0.96996 * 119.99678 * 95.00711 * 13 3 2 35 35 H 1.08994 * 109.47394 * 300.00422 * 16 14 13 36 36 H 1.09001 * 109.46828 * 60.00478 * 16 14 13 37 37 H 1.07997 * 119.97291 * 359.97438 * 18 17 16 38 38 H 1.07997 * 120.03041 * 180.24923 * 19 18 17 39 39 H 1.09000 * 109.47488 * 300.00605 * 22 21 20 40 40 H 1.09005 * 109.46943 * 60.00583 * 22 21 20 41 41 H 1.08997 * 109.46758 * 55.00175 * 23 22 21 42 42 H 1.09005 * 109.46841 * 60.00000 * 24 23 22 43 43 H 1.08996 * 109.46589 * 179.97438 * 24 23 22 44 44 H 1.08996 * 109.47058 * 300.00059 * 24 23 22 45 45 H 1.09003 * 109.47278 * 180.02562 * 25 23 22 46 46 H 1.09005 * 109.47293 * 299.99638 * 25 23 22 47 47 H 1.09001 * 109.47498 * 59.99616 * 25 23 22 48 48 H 1.07997 * 120.02603 * 179.97438 * 26 20 19 49 49 H 1.07994 * 119.97287 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0049 0.8814 -1.3818 10 1 6.5548 -0.3500 -0.7602 11 1 6.3828 0.9225 -2.8173 12 1 6.5569 2.0740 -0.6902 13 7 1.6523 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6319 0.4344 16 6 0.0362 3.3376 2.6549 17 6 -1.3618 3.8851 2.5235 18 6 -1.5576 5.1745 2.0642 19 6 -2.8383 5.6767 1.9375 20 6 -3.9278 4.8902 2.2827 21 8 -5.1884 5.3843 2.1651 22 6 -5.3183 6.7216 1.6786 23 6 -6.7995 7.0998 1.6156 24 6 -6.9338 8.5701 1.2144 25 6 -7.5064 6.2220 0.5808 26 6 -3.7283 3.5989 2.7487 27 6 -2.4459 3.0990 2.8673 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8292 -0.0603 -2.9502 34 1 2.2719 2.1233 1.9977 35 1 0.0672 2.6130 3.4685 36 1 0.7275 4.1530 2.8679 37 1 -0.7089 5.7880 1.8005 38 1 -2.9910 6.6825 1.5749 39 1 -4.7975 7.4046 2.3496 40 1 -4.8830 6.7894 0.6815 41 1 -7.2553 6.9470 2.5938 42 1 -6.4779 8.7229 0.2361 43 1 -7.9891 8.8393 1.1691 44 1 -6.4302 9.1954 1.9516 45 1 -8.5616 6.4917 0.5356 46 1 -7.0505 6.3748 -0.3975 47 1 -7.4107 5.1745 0.8667 48 1 -4.5748 2.9849 3.0184 49 1 -2.2901 2.0936 3.2296 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183939691.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:34 Heat of formation + Delta-G solvation = -94.463695 kcal Electronic energy + Delta-G solvation = -26427.601671 eV Core-core repulsion = 22739.274219 eV Total energy + Delta-G solvation = -3688.327452 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.27875 -40.52091 -38.74368 -36.86415 -36.16647 -34.25230 -33.31262 -32.33946 -31.95643 -29.24192 -28.15372 -28.07189 -26.98608 -24.93085 -23.74293 -22.81255 -21.70362 -21.10059 -20.93823 -19.17025 -18.81897 -17.40743 -17.32473 -17.15983 -16.90545 -16.39467 -16.20143 -15.80926 -15.38523 -15.19808 -14.98357 -14.64304 -14.53820 -14.39598 -14.04546 -13.96733 -13.55975 -13.46615 -13.25635 -13.14761 -12.98592 -12.91386 -12.69843 -12.58228 -12.48053 -12.16823 -12.13444 -12.03603 -11.99594 -11.90214 -11.56362 -11.54957 -11.48522 -11.01937 -10.60673 -10.45723 -9.90595 -9.54001 -9.00584 -8.14229 -6.31505 0.43773 0.46665 1.45121 1.45703 1.56048 1.99242 2.23670 2.38190 2.63512 3.04108 3.15288 3.74513 3.83761 3.84396 3.93410 3.98560 4.11330 4.30356 4.32211 4.41191 4.46234 4.50351 4.51370 4.59753 4.63625 4.66955 4.74863 4.77126 4.79087 4.84395 4.96915 4.99355 5.09435 5.11980 5.17412 5.27776 5.32208 5.36516 5.38041 5.42220 5.47091 5.59149 5.68823 5.70862 5.83353 5.86392 5.98816 6.20664 6.48665 6.78204 7.10829 7.36606 7.71822 8.90857 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.023465 B = 0.002236 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.958897 B =12517.999405 C =12600.205798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.006 1.006 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.709 5.709 14 C 0.497 3.503 15 O -0.584 6.584 16 C -0.090 4.090 17 C -0.107 4.107 18 C -0.078 4.078 19 C -0.212 4.212 20 C 0.114 3.886 21 O -0.326 6.326 22 C 0.056 3.944 23 C -0.092 4.092 24 C -0.143 4.143 25 C -0.148 4.148 26 C -0.164 4.164 27 C -0.074 4.074 28 H 0.021 0.979 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.264 0.736 34 H 0.404 0.596 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.132 0.868 38 H 0.142 0.858 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.052 0.948 47 H 0.045 0.955 48 H 0.138 0.862 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.672 13.148 12.946 24.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.012 0.988 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.187 4.187 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.359 5.359 14 C 0.285 3.715 15 O -0.465 6.465 16 C -0.129 4.129 17 C -0.108 4.108 18 C -0.097 4.097 19 C -0.231 4.231 20 C 0.069 3.931 21 O -0.240 6.240 22 C -0.019 4.019 23 C -0.110 4.110 24 C -0.200 4.200 25 C -0.205 4.205 26 C -0.182 4.182 27 C -0.092 4.092 28 H 0.040 0.960 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.239 0.761 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.150 0.850 38 H 0.159 0.841 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.156 0.844 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.382 12.953 12.141 24.157 hybrid contribution 1.331 -0.152 -0.519 1.437 sum -15.051 12.801 11.621 22.923 Atomic orbital electron populations 1.21659 0.97016 0.98920 1.00266 1.21777 0.93676 0.99348 1.01147 1.18298 0.93428 0.89057 0.81680 0.98822 1.21610 0.91584 1.38631 1.06566 0.90945 1.25791 1.03263 0.94534 0.95123 1.70063 1.37003 1.38530 1.09881 0.85383 0.79246 0.78873 0.77049 1.19723 1.21457 1.18817 1.46269 1.15811 1.56363 1.17407 1.21187 0.81522 0.78511 0.90323 1.90679 1.52380 1.60814 1.42600 1.20666 0.94647 1.02353 0.95230 1.19416 0.94613 0.94582 1.02206 1.21021 0.97033 0.95367 0.96235 1.21355 0.92454 1.01593 1.07703 1.19123 0.83763 0.93668 0.96562 1.86013 1.24654 1.32143 1.81232 1.23130 0.98972 0.80749 0.99024 1.21148 0.92281 0.96795 1.00801 1.21772 1.03256 0.93012 1.01950 1.21826 1.00899 0.99421 0.98374 1.20557 0.98084 0.94043 1.05561 1.21013 0.91190 0.99465 0.97580 0.96010 0.93844 0.93372 0.91336 0.93999 0.92728 0.76124 0.85708 0.86042 0.85027 0.84063 0.90972 0.92206 0.90111 0.92221 0.90704 0.91595 0.91152 0.92901 0.93540 0.84431 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.51 71.98 0.61 -4.92 16 2 C -0.12 -5.96 5.45 30.60 0.17 -5.79 16 3 C 0.28 14.23 2.24 44.25 0.10 14.33 16 4 H -0.01 -0.38 7.58 -2.38 -0.02 -0.39 16 5 C -0.55 -28.67 8.73 25.60 0.22 -28.44 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.01 0.68 5.29 84.65 0.45 1.13 16 8 N -0.92 -52.79 11.29 21.45 0.24 -52.55 16 9 Si 0.97 42.03 29.54 68.60 2.03 44.05 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 13 N -0.71 -28.20 5.02 -446.08 -2.24 -30.44 16 14 C 0.50 18.73 6.39 87.66 0.56 19.29 16 15 O -0.58 -27.48 13.17 -3.03 -0.04 -27.52 16 16 C -0.09 -2.28 5.83 29.11 0.17 -2.11 16 17 C -0.11 -2.98 4.37 -19.85 -0.09 -3.07 16 18 C -0.08 -2.11 9.69 22.25 0.22 -1.90 16 19 C -0.21 -5.40 9.04 22.37 0.20 -5.20 16 20 C 0.11 3.04 6.69 22.51 0.15 3.19 16 21 O -0.33 -7.91 9.67 -92.44 -0.89 -8.80 16 22 C 0.06 0.99 4.12 71.98 0.30 1.29 16 23 C -0.09 -1.29 3.16 -10.79 -0.03 -1.32 16 24 C -0.14 -1.40 9.19 71.98 0.66 -0.74 16 25 C -0.15 -2.26 9.09 71.98 0.65 -1.60 16 26 C -0.16 -4.36 9.99 22.37 0.22 -4.14 16 27 C -0.07 -2.00 9.69 22.25 0.22 -1.78 16 28 H 0.02 1.07 7.85 -2.39 -0.02 1.05 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.73 16 30 H 0.05 2.08 5.64 -2.38 -0.01 2.07 16 31 H 0.07 3.82 5.95 -2.39 -0.01 3.80 16 32 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.26 14.43 8.31 -92.71 -0.77 13.65 16 34 H 0.40 13.29 8.54 -92.71 -0.79 12.49 16 35 H 0.12 2.45 8.08 -2.39 -0.02 2.43 16 36 H 0.12 2.46 8.08 -2.39 -0.02 2.44 16 37 H 0.13 3.16 8.06 -2.91 -0.02 3.13 16 38 H 0.14 2.91 6.30 -2.91 -0.02 2.89 16 39 H 0.07 1.09 7.66 -2.39 -0.02 1.07 16 40 H 0.06 1.08 7.66 -2.38 -0.02 1.06 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 43 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 47 H 0.05 0.86 7.82 -2.39 -0.02 0.85 16 48 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 49 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -69.28 394.03 4.01 -65.27 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: 0.13 Total: 31.76 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 4.78 Total: -21.78 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -2.00 Total: -82.99 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.93 Total: -36.32 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -69.28 4.01 -65.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183939691.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.194 kcal (2) G-P(sol) polarization free energy of solvation -69.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds