Wall clock time and date at job start Tue Mar 31 2020 12:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47250 * 2 1 4 4 H 1.08999 * 109.47092 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.46855 * 174.99978 * 3 2 1 6 6 H 1.08004 * 119.99915 * 120.00251 * 5 3 2 7 7 C 1.37876 * 120.00185 * 300.00089 * 5 3 2 8 8 N 1.31516 * 120.00060 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00250 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46948 * 89.99660 * 9 7 5 11 11 H 1.48495 * 109.47282 * 209.99994 * 9 7 5 12 12 H 1.48499 * 109.46922 * 330.00167 * 9 7 5 13 13 N 1.46500 * 109.47071 * 294.99943 * 3 2 1 14 14 C 1.34777 * 119.99390 * 85.00230 * 13 3 2 15 15 O 1.21271 * 120.00523 * 359.97438 * 14 13 3 16 16 C 1.50708 * 119.99377 * 179.97438 * 14 13 3 17 17 C 1.53001 * 109.46576 * 179.97438 * 16 14 13 18 18 O 1.42903 * 109.46859 * 179.97438 * 17 16 14 19 19 C 1.35901 * 117.00263 * 179.97438 * 18 17 16 20 20 C 1.38749 * 120.05297 * 359.97438 * 19 18 17 21 21 C 1.38119 * 119.94363 * 180.02562 * 20 19 18 22 22 C 1.50706 * 119.97265 * 179.97438 * 21 20 19 23 23 C 1.38286 * 120.05624 * 359.72342 * 21 20 19 24 24 C 1.38241 * 120.10925 * 0.54819 * 23 21 20 25 25 C 1.50706 * 119.97263 * 179.72995 * 24 23 21 26 26 C 1.38164 * 120.05471 * 359.45327 * 24 23 21 27 27 C 1.50702 * 120.02814 * 180.29835 * 26 24 23 28 28 H 1.09007 * 109.46961 * 300.00060 * 1 2 3 29 29 H 1.09004 * 109.47278 * 59.99571 * 1 2 3 30 30 H 1.08991 * 109.47180 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47265 * 240.00270 * 2 1 3 32 32 H 1.08994 * 109.47285 * 120.00445 * 2 1 3 33 33 H 0.96998 * 120.00414 * 180.02562 * 8 7 5 34 34 H 0.96992 * 120.00303 * 264.99704 * 13 3 2 35 35 H 1.08997 * 109.47328 * 60.00352 * 16 14 13 36 36 H 1.09005 * 109.46823 * 299.99577 * 16 14 13 37 37 H 1.08999 * 109.47698 * 60.00408 * 17 16 14 38 38 H 1.08997 * 109.47364 * 299.99625 * 17 16 14 39 39 H 1.08004 * 120.02887 * 359.97438 * 20 19 18 40 40 H 1.08993 * 109.46902 * 90.00161 * 22 21 20 41 41 H 1.09004 * 109.47034 * 210.00068 * 22 21 20 42 42 H 1.09000 * 109.47284 * 329.99853 * 22 21 20 43 43 H 1.08000 * 119.94870 * 180.29760 * 23 21 20 44 44 H 1.09001 * 109.46953 * 269.72239 * 25 24 23 45 45 H 1.09000 * 109.47318 * 29.71837 * 25 24 23 46 46 H 1.09000 * 109.47161 * 149.72467 * 25 24 23 47 47 H 1.09001 * 109.47324 * 90.00022 * 27 26 24 48 48 H 1.09001 * 109.47196 * 210.00211 * 27 26 24 49 49 H 1.09001 * 109.47301 * 329.99839 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8782 1.2279 8 7 5.4540 0.8802 1.3362 9 14 3.0965 0.1087 2.5700 10 1 2.8756 -1.3274 2.2632 11 1 3.7938 0.2345 3.8751 12 1 1.7878 0.8071 2.6386 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3668 15 8 -0.3395 2.6320 -0.4343 16 6 0.0367 3.3387 -2.6544 17 6 -1.3826 3.8944 -2.5210 18 8 -1.7602 4.5343 -3.7417 19 6 -3.0017 5.0848 -3.7913 20 6 -3.8395 5.0102 -2.6878 21 6 -5.1011 5.5701 -2.7409 22 6 -6.0118 5.4890 -1.5429 23 6 -5.5272 6.2096 -3.8906 24 6 -4.6964 6.2804 -4.9933 25 6 -5.1662 6.9728 -6.2467 26 6 -3.4336 5.7219 -4.9452 27 6 -2.5259 5.8053 -6.1453 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 5.8771 0.4817 2.1128 34 1 2.2719 2.1232 -1.9977 35 1 0.0680 2.6147 -3.4686 36 1 0.7282 4.1542 -2.8665 37 1 -1.4144 4.6183 -1.7068 38 1 -2.0737 3.0786 -2.3091 39 1 -3.5059 4.5141 -1.7884 40 1 -5.8516 6.3582 -0.9052 41 1 -7.0495 5.4691 -1.8761 42 1 -5.7932 4.5809 -0.9811 43 1 -6.5121 6.6510 -3.9286 44 1 -5.6594 6.2507 -6.8975 45 1 -5.8686 7.7636 -5.9835 46 1 -4.3105 7.4047 -6.7657 47 1 -1.9272 6.7142 -6.0857 48 1 -1.8673 4.9370 -6.1638 49 1 -3.1267 5.8249 -7.0546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183940860.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:01 Heat of formation + Delta-G solvation = -73.600062 kcal Electronic energy + Delta-G solvation = -26586.498747 eV Core-core repulsion = 22899.076010 eV Total energy + Delta-G solvation = -3687.422737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.54367 -39.37994 -37.95940 -35.45882 -34.52045 -32.64657 -32.28145 -31.54199 -30.51815 -29.39777 -27.60295 -27.34617 -25.21871 -24.14980 -22.63935 -21.71935 -20.84954 -20.05762 -19.60208 -17.84870 -16.95302 -16.56378 -16.41046 -15.83185 -15.72598 -15.47260 -14.97874 -14.39706 -14.17640 -14.03584 -13.69689 -13.54997 -13.40779 -13.13059 -13.02165 -12.98023 -12.92038 -12.74827 -12.25776 -12.19727 -12.06725 -11.89240 -11.79648 -11.65550 -11.39005 -11.33036 -11.10237 -10.93536 -10.81724 -10.67407 -10.59996 -9.96316 -9.61810 -9.28168 -9.20060 -8.78855 -8.65757 -8.16318 -8.12704 -6.24046 -4.26864 1.13923 1.31443 2.93941 3.13677 3.21082 3.33078 3.37526 3.52723 4.09152 4.28607 4.53607 4.56440 4.79803 4.86599 4.96910 4.97678 4.98179 5.09478 5.11285 5.26099 5.32046 5.33529 5.40853 5.50333 5.51445 5.53489 5.57843 5.61412 5.65640 5.75876 5.80104 5.84254 5.92608 5.98859 6.12127 6.14052 6.24465 6.37354 6.47070 6.61504 6.65716 6.69607 6.79943 6.90752 7.21464 7.25333 7.34029 7.47173 8.09557 8.47332 8.71798 8.86281 9.36474 10.87968 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.024107 B = 0.002415 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.187119 B =11591.602163 C =12327.573839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.697 5.697 14 C 0.508 3.492 15 O -0.553 6.553 16 C -0.142 4.142 17 C 0.077 3.923 18 O -0.315 6.315 19 C 0.143 3.857 20 C -0.210 4.210 21 C -0.049 4.049 22 C -0.116 4.116 23 C -0.159 4.159 24 C -0.051 4.051 25 C -0.114 4.114 26 C -0.127 4.127 27 C -0.104 4.104 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.031 0.969 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.268 0.732 34 H 0.397 0.603 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.131 0.869 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.120 0.880 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.362 9.617 -13.674 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.185 1.185 13 N -0.345 5.345 14 C 0.293 3.707 15 O -0.433 6.433 16 C -0.182 4.182 17 C 0.002 3.998 18 O -0.228 6.228 19 C 0.097 3.903 20 C -0.229 4.229 21 C -0.049 4.049 22 C -0.172 4.172 23 C -0.178 4.178 24 C -0.051 4.051 25 C -0.171 4.171 26 C -0.128 4.128 27 C -0.161 4.161 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.230 0.770 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.149 0.851 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.138 0.862 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.560 9.519 -13.020 26.131 hybrid contribution -0.063 -0.633 0.721 0.961 sum -20.623 8.886 -12.300 25.604 Atomic orbital electron populations 1.21873 0.96963 0.99054 1.02184 1.22290 0.94336 0.99958 1.01173 1.19166 0.95672 0.88501 0.82779 0.93278 1.21048 0.88579 1.39892 1.07892 0.90155 1.24839 0.94878 0.95144 0.97679 1.69865 1.08685 1.44413 1.29845 0.86898 0.80940 0.79952 0.80908 1.20233 1.22147 1.18483 1.46141 1.14682 1.55591 1.18096 1.20060 0.82782 0.79229 0.88619 1.90679 1.51522 1.60291 1.40775 1.21506 0.96404 1.02174 0.98097 1.22456 0.95690 0.97019 0.84624 1.85963 1.29262 1.69404 1.38203 1.18730 0.84355 0.93473 0.93754 1.21210 0.95459 1.07136 0.99072 1.19665 0.94022 0.95785 0.95475 1.20815 0.98215 1.02715 0.95500 1.20747 1.00195 1.03789 0.93034 1.19526 0.92651 0.97064 0.95844 1.20814 1.01641 0.99821 0.94788 1.19045 0.95788 1.03061 0.94919 1.20611 0.98268 1.02706 0.94507 0.92871 0.93019 0.94952 0.92255 0.92742 0.92251 0.76995 0.88255 0.88086 0.91085 0.91176 0.85089 0.90979 0.91487 0.91344 0.86198 0.91032 0.91484 0.91125 0.91549 0.91120 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.51 37.16 0.32 -2.50 16 2 C -0.14 -3.02 5.11 -26.73 -0.14 -3.16 16 3 C 0.24 5.59 1.83 -69.08 -0.13 5.46 16 4 H 0.05 1.26 6.64 -51.93 -0.34 0.92 16 5 C -0.54 -14.23 9.31 -34.44 -0.32 -14.55 16 6 H 0.08 2.24 7.98 -52.48 -0.42 1.82 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -26.18 13.96 55.43 0.77 -25.41 16 9 Si 0.88 21.55 24.41 -169.99 -4.15 17.40 16 10 H -0.28 -6.52 6.83 56.52 0.39 -6.13 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 13 N -0.70 -13.12 5.02 -54.93 -0.28 -13.39 16 14 C 0.51 8.84 6.40 -10.98 -0.07 8.77 16 15 O -0.55 -11.30 13.12 5.56 0.07 -11.23 16 16 C -0.14 -1.83 6.07 -27.88 -0.17 -2.00 16 17 C 0.08 1.02 4.03 37.16 0.15 1.17 16 18 O -0.31 -4.13 9.18 -19.43 -0.18 -4.30 16 19 C 0.14 1.83 6.66 -39.22 -0.26 1.57 16 20 C -0.21 -2.58 8.69 -39.44 -0.34 -2.93 16 21 C -0.05 -0.53 5.88 -104.64 -0.62 -1.15 16 22 C -0.12 -0.97 10.01 36.01 0.36 -0.61 16 23 C -0.16 -1.59 9.35 -39.56 -0.37 -1.96 16 24 C -0.05 -0.51 5.88 -104.64 -0.62 -1.12 16 25 C -0.11 -0.79 9.19 36.01 0.33 -0.46 16 26 C -0.13 -1.45 5.89 -104.48 -0.62 -2.07 16 27 C -0.10 -0.97 8.97 36.01 0.32 -0.65 16 28 H 0.05 1.11 7.85 -51.92 -0.41 0.70 16 29 H 0.05 0.98 5.64 -51.93 -0.29 0.69 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.05 1.25 3.21 -51.93 -0.17 1.09 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.40 6.55 8.54 -40.82 -0.35 6.20 16 35 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.07 0.98 7.62 -51.93 -0.40 0.58 16 38 H 0.07 0.94 7.62 -51.93 -0.40 0.55 16 39 H 0.13 1.60 6.30 -52.48 -0.33 1.27 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 42 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 46 H 0.07 0.44 6.70 -51.93 -0.35 0.09 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.07 0.70 7.53 -51.93 -0.39 0.31 16 49 H 0.06 0.48 6.70 -51.93 -0.35 0.14 16 LS Contribution 383.34 15.07 5.78 5.78 Total: -1.00 -31.08 383.34 -8.25 -39.33 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -8.01 Total: 5.93 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -2.26 Total: -14.10 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.50 Total: -38.80 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.11 Total: -15.53 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.15 Total: 17.40 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.08 -8.25 -39.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183940860.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.269 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds