Wall clock time and date at job start Tue Mar 31 2020 12:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47250 * 2 1 4 4 H 1.08999 * 109.47092 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.46855 * 174.99978 * 3 2 1 6 6 H 1.08004 * 119.99915 * 120.00251 * 5 3 2 7 7 C 1.37876 * 120.00185 * 300.00089 * 5 3 2 8 8 N 1.31516 * 120.00060 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00250 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46948 * 89.99660 * 9 7 5 11 11 H 1.48495 * 109.47282 * 209.99994 * 9 7 5 12 12 H 1.48499 * 109.46922 * 330.00167 * 9 7 5 13 13 N 1.46500 * 109.47071 * 294.99943 * 3 2 1 14 14 C 1.34777 * 119.99390 * 85.00230 * 13 3 2 15 15 O 1.21271 * 120.00523 * 359.97438 * 14 13 3 16 16 C 1.50708 * 119.99377 * 179.97438 * 14 13 3 17 17 C 1.53001 * 109.46576 * 179.97438 * 16 14 13 18 18 O 1.42903 * 109.46859 * 179.97438 * 17 16 14 19 19 C 1.35901 * 117.00263 * 179.97438 * 18 17 16 20 20 C 1.38749 * 120.05297 * 359.97438 * 19 18 17 21 21 C 1.38119 * 119.94363 * 180.02562 * 20 19 18 22 22 C 1.50706 * 119.97265 * 179.97438 * 21 20 19 23 23 C 1.38286 * 120.05624 * 359.72342 * 21 20 19 24 24 C 1.38241 * 120.10925 * 0.54819 * 23 21 20 25 25 C 1.50706 * 119.97263 * 179.72995 * 24 23 21 26 26 C 1.38164 * 120.05471 * 359.45327 * 24 23 21 27 27 C 1.50702 * 120.02814 * 180.29835 * 26 24 23 28 28 H 1.09007 * 109.46961 * 300.00060 * 1 2 3 29 29 H 1.09004 * 109.47278 * 59.99571 * 1 2 3 30 30 H 1.08991 * 109.47180 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47265 * 240.00270 * 2 1 3 32 32 H 1.08994 * 109.47285 * 120.00445 * 2 1 3 33 33 H 0.96998 * 120.00414 * 180.02562 * 8 7 5 34 34 H 0.96992 * 120.00303 * 264.99704 * 13 3 2 35 35 H 1.08997 * 109.47328 * 60.00352 * 16 14 13 36 36 H 1.09005 * 109.46823 * 299.99577 * 16 14 13 37 37 H 1.08999 * 109.47698 * 60.00408 * 17 16 14 38 38 H 1.08997 * 109.47364 * 299.99625 * 17 16 14 39 39 H 1.08004 * 120.02887 * 359.97438 * 20 19 18 40 40 H 1.08993 * 109.46902 * 90.00161 * 22 21 20 41 41 H 1.09004 * 109.47034 * 210.00068 * 22 21 20 42 42 H 1.09000 * 109.47284 * 329.99853 * 22 21 20 43 43 H 1.08000 * 119.94870 * 180.29760 * 23 21 20 44 44 H 1.09001 * 109.46953 * 269.72239 * 25 24 23 45 45 H 1.09000 * 109.47318 * 29.71837 * 25 24 23 46 46 H 1.09000 * 109.47161 * 149.72467 * 25 24 23 47 47 H 1.09001 * 109.47324 * 90.00022 * 27 26 24 48 48 H 1.09001 * 109.47196 * 210.00211 * 27 26 24 49 49 H 1.09001 * 109.47301 * 329.99839 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8782 1.2279 8 7 5.4540 0.8802 1.3362 9 14 3.0965 0.1087 2.5700 10 1 2.8756 -1.3274 2.2632 11 1 3.7938 0.2345 3.8751 12 1 1.7878 0.8071 2.6386 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3668 15 8 -0.3395 2.6320 -0.4343 16 6 0.0367 3.3387 -2.6544 17 6 -1.3826 3.8944 -2.5210 18 8 -1.7602 4.5343 -3.7417 19 6 -3.0017 5.0848 -3.7913 20 6 -3.8395 5.0102 -2.6878 21 6 -5.1011 5.5701 -2.7409 22 6 -6.0118 5.4890 -1.5429 23 6 -5.5272 6.2096 -3.8906 24 6 -4.6964 6.2804 -4.9933 25 6 -5.1662 6.9728 -6.2467 26 6 -3.4336 5.7219 -4.9452 27 6 -2.5259 5.8053 -6.1453 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 5.8771 0.4817 2.1128 34 1 2.2719 2.1232 -1.9977 35 1 0.0680 2.6147 -3.4686 36 1 0.7282 4.1542 -2.8665 37 1 -1.4144 4.6183 -1.7068 38 1 -2.0737 3.0786 -2.3091 39 1 -3.5059 4.5141 -1.7884 40 1 -5.8516 6.3582 -0.9052 41 1 -7.0495 5.4691 -1.8761 42 1 -5.7932 4.5809 -0.9811 43 1 -6.5121 6.6510 -3.9286 44 1 -5.6594 6.2507 -6.8975 45 1 -5.8686 7.7636 -5.9835 46 1 -4.3105 7.4047 -6.7657 47 1 -1.9272 6.7142 -6.0857 48 1 -1.8673 4.9370 -6.1638 49 1 -3.1267 5.8249 -7.0546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183940860.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:00 Heat of formation + Delta-G solvation = -91.956619 kcal Electronic energy + Delta-G solvation = -26587.294747 eV Core-core repulsion = 22899.076010 eV Total energy + Delta-G solvation = -3688.218737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.45328 -40.80819 -38.89104 -37.17495 -35.26141 -34.42148 -33.75490 -32.85246 -31.53684 -30.12198 -29.44190 -28.02419 -26.18393 -25.21631 -24.38123 -22.66017 -22.28057 -21.29262 -20.86856 -19.23068 -18.43941 -17.70032 -17.44439 -17.30957 -17.16910 -16.41064 -16.29457 -15.99923 -15.29936 -15.00233 -14.92862 -14.75015 -14.41106 -14.27782 -14.19041 -13.87907 -13.77986 -13.69965 -13.66101 -13.55291 -13.28163 -12.96650 -12.84686 -12.78318 -12.76380 -12.51299 -12.42102 -12.20971 -12.15216 -11.86758 -11.62931 -11.52513 -11.39693 -11.24819 -10.87981 -10.75336 -9.78766 -9.45259 -9.01432 -8.39123 -6.44574 0.32936 0.47406 1.25780 1.34110 1.43486 1.73141 1.86251 2.24733 2.71139 2.75508 2.96746 3.64418 3.80522 3.85736 3.92679 4.04478 4.08354 4.21688 4.23108 4.27253 4.31593 4.40936 4.44982 4.51111 4.63932 4.70437 4.72275 4.77093 4.80141 4.81780 4.83976 4.86896 4.88684 4.93611 5.00422 5.11221 5.11409 5.20147 5.21618 5.40139 5.40463 5.44976 5.51049 5.59515 5.64856 5.68703 5.91095 6.12811 6.41163 6.57952 6.85712 7.18239 7.43434 8.76012 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.024107 B = 0.002415 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.187119 B =11591.602163 C =12327.573839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 C 0.249 3.751 4 H 0.023 0.977 5 C -0.533 4.533 6 H 0.057 0.943 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.936 3.064 10 H -0.260 1.260 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.698 5.698 14 C 0.509 3.491 15 O -0.583 6.583 16 C -0.127 4.127 17 C 0.085 3.915 18 O -0.318 6.318 19 C 0.116 3.884 20 C -0.230 4.230 21 C -0.060 4.060 22 C -0.114 4.114 23 C -0.162 4.162 24 C -0.054 4.054 25 C -0.113 4.113 26 C -0.142 4.142 27 C -0.102 4.102 28 H 0.036 0.964 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.270 0.730 34 H 0.409 0.591 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.122 0.878 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.144 0.856 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.060 0.940 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.726 9.942 -15.315 29.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.176 4.176 3 C 0.144 3.856 4 H 0.040 0.960 5 C -0.571 4.571 6 H 0.076 0.924 7 C -0.171 4.171 8 N -0.573 5.573 9 Si 0.764 3.236 10 H -0.186 1.186 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.347 5.347 14 C 0.296 3.704 15 O -0.465 6.465 16 C -0.167 4.167 17 C 0.009 3.991 18 O -0.232 6.232 19 C 0.071 3.929 20 C -0.248 4.248 21 C -0.060 4.060 22 C -0.171 4.171 23 C -0.180 4.180 24 C -0.054 4.054 25 C -0.169 4.169 26 C -0.143 4.143 27 C -0.158 4.158 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.244 0.756 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.140 0.860 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.162 0.838 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.089 0.911 48 H 0.079 0.921 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -22.938 9.851 -14.697 28.969 hybrid contribution 0.624 -0.629 1.157 1.458 sum -22.314 9.222 -13.540 27.681 Atomic orbital electron populations 1.21763 0.95174 1.00548 1.01617 1.22210 0.95862 0.98487 1.01076 1.18787 0.93156 0.89691 0.83943 0.95956 1.21305 0.90408 1.38485 1.06931 0.92446 1.25553 0.95725 0.95950 0.99879 1.69974 1.10264 1.46147 1.30871 0.86037 0.79301 0.79952 0.78341 1.18578 1.22185 1.18476 1.45969 1.15734 1.55909 1.17114 1.20714 0.81648 0.78304 0.89712 1.90671 1.52250 1.61187 1.42353 1.21393 0.96447 1.02919 0.95920 1.22275 0.95657 0.96509 0.84630 1.85923 1.29832 1.69708 1.37714 1.19041 0.84366 0.94736 0.94756 1.21288 0.96479 1.08198 0.98871 1.19995 0.93779 0.95487 0.96748 1.20851 0.98733 1.02769 0.94741 1.21104 1.01215 1.03128 0.92569 1.19958 0.92018 0.96316 0.97098 1.20887 1.02333 1.00233 0.93462 1.19400 0.96802 1.03014 0.95044 1.20631 0.98162 1.02447 0.94591 0.94486 0.92564 0.92368 0.91199 0.93918 0.92099 0.75597 0.85671 0.86220 0.92333 0.91893 0.86049 0.90339 0.89657 0.91811 0.83792 0.89836 0.90050 0.90389 0.91113 0.92056 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.03 8.51 71.98 0.61 -4.42 16 2 C -0.14 -5.82 5.11 30.59 0.16 -5.67 16 3 C 0.25 11.48 1.83 44.25 0.08 11.56 16 4 H 0.02 1.17 6.64 -2.39 -0.02 1.15 16 5 C -0.53 -28.68 9.31 25.60 0.24 -28.44 16 6 H 0.06 3.28 7.98 -2.91 -0.02 3.26 16 7 C 0.03 1.61 5.45 84.65 0.46 2.07 16 8 N -0.93 -55.84 13.96 21.45 0.30 -55.54 16 9 Si 0.94 44.64 24.41 68.60 1.67 46.31 16 10 H -0.26 -11.67 6.83 99.48 0.68 -10.99 16 11 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 12 H -0.26 -12.30 6.53 99.48 0.65 -11.65 16 13 N -0.70 -25.82 5.02 -446.09 -2.24 -28.06 16 14 C 0.51 17.32 6.40 87.66 0.56 17.88 16 15 O -0.58 -23.80 13.12 -3.00 -0.04 -23.84 16 16 C -0.13 -3.09 6.07 29.85 0.18 -2.91 16 17 C 0.08 2.22 4.03 71.98 0.29 2.51 16 18 O -0.32 -8.22 9.18 -92.44 -0.85 -9.07 16 19 C 0.12 2.97 6.66 22.50 0.15 3.12 16 20 C -0.23 -5.72 8.69 22.36 0.19 -5.52 16 21 C -0.06 -1.25 5.88 -19.88 -0.12 -1.36 16 22 C -0.11 -1.79 10.01 71.24 0.71 -1.08 16 23 C -0.16 -2.91 9.35 22.28 0.21 -2.70 16 24 C -0.05 -0.97 5.88 -19.88 -0.12 -1.09 16 25 C -0.11 -1.21 9.19 71.24 0.66 -0.56 16 26 C -0.14 -3.07 5.89 -19.77 -0.12 -3.18 16 27 C -0.10 -1.74 8.97 71.24 0.64 -1.10 16 28 H 0.04 1.49 7.85 -2.38 -0.02 1.47 16 29 H 0.06 2.04 5.64 -2.38 -0.01 2.03 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.04 1.90 3.21 -2.39 -0.01 1.90 16 33 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 34 H 0.41 13.12 8.54 -92.71 -0.79 12.33 16 35 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.12 2.53 8.14 -2.38 -0.02 2.51 16 37 H 0.06 1.65 7.62 -2.39 -0.02 1.63 16 38 H 0.06 1.71 7.62 -2.39 -0.02 1.70 16 39 H 0.12 3.12 6.30 -2.91 -0.02 3.10 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.08 1.00 8.09 -2.38 -0.02 0.98 16 42 H 0.06 1.04 8.08 -2.39 -0.02 1.02 16 43 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 44 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.08 0.66 8.08 -2.39 -0.02 0.64 16 46 H 0.08 0.74 6.70 -2.39 -0.02 0.72 16 47 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.06 1.15 7.53 -2.39 -0.02 1.13 16 49 H 0.08 1.06 6.70 -2.39 -0.02 1.05 16 Total: -1.00 -67.90 383.34 3.71 -64.19 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.07 Total: 26.92 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 4.79 Total: -20.90 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -1.94 Total: -83.60 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.89 Total: -32.91 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.67 Total: 46.31 kcal Total: -67.90 3.71 -64.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183940860.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.769 kcal (2) G-P(sol) polarization free energy of solvation -67.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds