Wall clock time and date at job start Tue Mar 31 2020 12:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47065 * 2 1 4 4 H 1.09002 * 109.47259 * 304.99781 * 3 2 1 5 5 C 1.50703 * 109.46815 * 185.00107 * 3 2 1 6 6 H 1.08001 * 119.99613 * 240.00018 * 5 3 2 7 7 C 1.37874 * 120.00265 * 59.99898 * 5 3 2 8 8 N 1.31509 * 120.00165 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00048 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47131 * 59.99633 * 9 7 5 11 11 H 1.48503 * 109.47111 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46696 * 300.00067 * 9 7 5 13 13 N 1.46496 * 109.47348 * 65.00052 * 3 2 1 14 14 C 1.34776 * 119.99846 * 275.00074 * 13 3 2 15 15 O 1.21282 * 119.99940 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00035 * 180.02562 * 14 13 3 17 17 C 1.53006 * 109.47184 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47127 * 179.97438 * 17 16 14 19 19 O 1.42895 * 109.47269 * 179.97438 * 18 17 16 20 20 C 1.35901 * 117.00475 * 179.97438 * 19 18 17 21 21 C 1.38757 * 120.05248 * 359.72479 * 20 19 18 22 22 C 1.38119 * 119.94406 * 179.74207 * 21 20 19 23 23 C 1.38289 * 120.05617 * 0.51293 * 22 21 20 24 24 C 1.50697 * 119.94670 * 179.74319 * 23 22 21 25 25 C 1.38254 * 120.10899 * 359.76166 * 23 22 21 26 26 C 1.50698 * 119.96888 * 179.97438 * 25 23 22 27 27 C 1.38165 * 120.05493 * 359.97438 * 25 23 22 28 28 H 1.09002 * 109.47359 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47448 * 300.00133 * 1 2 3 30 30 H 1.09003 * 109.46908 * 60.00203 * 1 2 3 31 31 H 1.09003 * 109.47086 * 239.99207 * 2 1 3 32 32 H 1.09003 * 109.46908 * 119.99797 * 2 1 3 33 33 H 0.96998 * 120.00316 * 180.02562 * 8 7 5 34 34 H 0.96998 * 120.00192 * 95.00122 * 13 3 2 35 35 H 1.09001 * 109.47612 * 59.99945 * 16 14 13 36 36 H 1.09001 * 109.47122 * 299.99777 * 16 14 13 37 37 H 1.09001 * 109.47002 * 299.99404 * 17 16 14 38 38 H 1.08993 * 109.46955 * 59.99842 * 17 16 14 39 39 H 1.09001 * 109.47289 * 299.99953 * 18 17 16 40 40 H 1.09004 * 109.47261 * 59.99697 * 18 17 16 41 41 H 1.08001 * 120.02734 * 359.97438 * 21 20 19 42 42 H 1.07999 * 119.97388 * 180.25307 * 22 21 20 43 43 H 1.08992 * 109.47370 * 270.01921 * 24 23 22 44 44 H 1.08998 * 109.47171 * 30.02052 * 24 23 22 45 45 H 1.09007 * 109.47127 * 150.02209 * 24 23 22 46 46 H 1.09002 * 109.46727 * 270.01901 * 26 25 23 47 47 H 1.08994 * 109.47837 * 30.01868 * 26 25 23 48 48 H 1.09002 * 109.47199 * 150.02540 * 26 25 23 49 49 H 1.07998 * 120.02804 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4063 0.3365 -2.1728 9 14 6.0050 0.8798 -1.3811 10 1 6.5966 0.1451 -0.2342 11 1 6.3979 0.2154 -2.6498 12 1 6.5005 2.2798 -1.3807 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3393 2.6326 0.4340 16 6 0.0367 3.3387 2.6543 17 6 -1.3822 3.8954 2.5206 18 6 -1.7870 4.5794 3.8279 19 8 -3.1119 5.0999 3.7028 20 6 -3.6271 5.7425 4.7839 21 6 -2.8748 5.8644 5.9434 22 6 -3.3986 6.5226 7.0390 23 6 -4.6756 7.0505 6.9846 24 6 -5.2467 7.7630 8.1833 25 6 -5.4292 6.9253 5.8323 26 6 -6.8207 7.5013 5.7766 27 6 -4.9078 6.2726 4.7318 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5140 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0620 -2.9494 34 1 2.2719 2.1232 1.9977 35 1 0.7280 4.1542 2.8666 36 1 0.0680 2.6146 3.4685 37 1 -1.4131 4.6196 1.7065 38 1 -2.0738 3.0802 2.3082 39 1 -1.7562 3.8550 4.6418 40 1 -1.0954 5.3946 4.0408 41 1 -1.8792 5.4483 5.9880 42 1 -2.8119 6.6213 7.9404 43 1 -5.7664 7.0459 8.8187 44 1 -4.4393 8.2299 8.7473 45 1 -5.9478 8.5287 7.8509 46 1 -7.5380 6.7512 6.1099 47 1 -6.8791 8.3740 6.4270 48 1 -7.0516 7.7951 4.7527 49 1 -5.4971 6.1747 3.8321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183972782.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:21 Heat of formation + Delta-G solvation = -80.368147 kcal Electronic energy + Delta-G solvation = -25722.396118 eV Core-core repulsion = 22034.679895 eV Total energy + Delta-G solvation = -3687.716223 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.44644 -39.11610 -38.21223 -35.23577 -33.78109 -32.85633 -32.37222 -32.02303 -30.88137 -28.34319 -27.36811 -26.44797 -25.99691 -23.23158 -22.63691 -21.88330 -20.61025 -20.07645 -19.29472 -17.95541 -17.10004 -16.47823 -16.41210 -15.66431 -15.51197 -15.23305 -15.06436 -14.57259 -14.46419 -14.17881 -13.85780 -13.54995 -13.45985 -13.11523 -13.01256 -12.72435 -12.50139 -12.36962 -12.27837 -12.11075 -11.75020 -11.51830 -11.47709 -11.42788 -11.23191 -11.07122 -10.98890 -10.87343 -10.81575 -10.57471 -10.32987 -10.15743 -9.62690 -9.06509 -9.03280 -8.96398 -8.49680 -8.21936 -7.80910 -6.12366 -4.22030 1.07665 1.20343 2.98471 3.24669 3.30292 3.31138 3.42316 3.47743 4.13333 4.38006 4.50835 4.52577 4.72693 4.84161 4.84798 4.85977 4.99147 5.04234 5.10691 5.18684 5.19014 5.28349 5.35065 5.39006 5.44093 5.47491 5.52708 5.56472 5.72621 5.82814 5.86061 6.09528 6.11672 6.16736 6.31494 6.39802 6.39899 6.46328 6.59162 6.66925 7.04262 7.20560 7.29033 7.37691 7.47193 7.61888 7.73824 7.90621 8.18655 8.68226 8.77871 9.15815 9.45556 10.92844 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.032305 B = 0.001813 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.525117 B =15438.483649 C =15932.512791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.710 5.710 14 C 0.500 3.500 15 O -0.548 6.548 16 C -0.140 4.140 17 C -0.101 4.101 18 C 0.061 3.939 19 O -0.312 6.312 20 C 0.134 3.866 21 C -0.212 4.212 22 C -0.077 4.077 23 C -0.132 4.132 24 C -0.111 4.111 25 C -0.049 4.049 26 C -0.118 4.118 27 C -0.152 4.152 28 H 0.022 0.978 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.099 0.901 32 H 0.030 0.970 33 H 0.265 0.735 34 H 0.388 0.612 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.753 12.245 19.827 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.358 5.358 14 C 0.285 3.715 15 O -0.427 6.427 16 C -0.180 4.180 17 C -0.139 4.139 18 C -0.014 4.014 19 O -0.226 6.226 20 C 0.088 3.912 21 C -0.231 4.231 22 C -0.095 4.095 23 C -0.132 4.132 24 C -0.167 4.167 25 C -0.049 4.049 26 C -0.174 4.174 27 C -0.171 4.171 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.220 0.780 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.146 0.854 42 H 0.141 0.859 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.351 12.065 18.742 27.065 hybrid contribution 1.695 -0.171 0.426 1.756 sum -13.656 11.894 19.168 26.370 Atomic orbital electron populations 1.21838 0.98347 0.97993 1.01241 1.21932 0.92607 0.99863 1.02221 1.18770 0.94128 0.89179 0.81139 0.93348 1.21198 0.90765 1.39110 1.06273 0.92190 1.24889 0.98574 0.94830 0.95404 1.69880 1.35210 1.37480 1.09346 0.86521 0.84908 0.78285 0.77442 1.20200 1.21131 1.20211 1.46497 1.14682 1.56061 1.18510 1.20238 0.82801 0.79464 0.89008 1.90682 1.51418 1.59924 1.40689 1.21559 0.97202 1.01306 0.97952 1.21210 0.95778 1.01294 0.95620 1.22910 0.81306 0.97526 0.99706 1.86090 1.31958 1.69010 1.35497 1.19017 0.93058 0.92695 0.86387 1.21265 1.01367 1.06408 0.94028 1.20794 0.94756 0.96234 0.97681 1.19643 0.94917 1.02759 0.95920 1.20770 1.00998 0.99648 0.95298 1.19525 0.96152 0.96810 0.92442 1.20876 0.92682 1.00863 1.02982 1.20296 0.94005 1.02918 0.99892 0.95908 0.94297 0.93148 0.88333 0.95110 0.92506 0.78022 0.89299 0.89390 0.89997 0.90050 0.92014 0.91990 0.85394 0.85913 0.91528 0.91888 0.91364 0.90892 0.90958 0.91359 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.72 2.24 -69.09 -0.15 6.56 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -13.99 8.73 -34.44 -0.30 -14.30 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.64 11.29 55.43 0.63 -24.02 16 9 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.71 -14.22 5.02 -54.94 -0.28 -14.50 16 14 C 0.50 9.41 6.40 -10.99 -0.07 9.34 16 15 O -0.55 -12.44 13.12 5.56 0.07 -12.37 16 16 C -0.14 -1.80 5.70 -27.88 -0.16 -1.96 16 17 C -0.10 -1.32 4.87 -26.73 -0.13 -1.45 16 18 C 0.06 0.66 4.74 37.16 0.18 0.83 16 19 O -0.31 -4.03 10.14 -19.43 -0.20 -4.22 16 20 C 0.13 1.58 6.69 -39.22 -0.26 1.32 16 21 C -0.21 -2.16 9.04 -39.43 -0.36 -2.51 16 22 C -0.08 -0.69 9.69 -39.61 -0.38 -1.07 16 23 C -0.13 -1.16 5.88 -104.60 -0.62 -1.77 16 24 C -0.11 -0.66 9.60 36.00 0.35 -0.32 16 25 C -0.05 -0.45 5.88 -104.64 -0.62 -1.07 16 26 C -0.12 -0.75 9.60 36.00 0.35 -0.40 16 27 C -0.15 -1.65 9.64 -39.44 -0.38 -2.03 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.83 5.65 -51.93 -0.29 0.54 16 30 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 31 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.39 6.66 8.54 -40.82 -0.35 6.31 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 38 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 39 H 0.06 0.58 7.65 -51.93 -0.40 0.18 16 40 H 0.06 0.59 7.68 -51.93 -0.40 0.19 16 41 H 0.13 1.10 6.30 -52.49 -0.33 0.77 16 42 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 45 H 0.07 0.34 5.94 -51.92 -0.31 0.04 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.37 5.94 -51.93 -0.31 0.06 16 48 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 49 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 390.83 15.07 5.89 5.89 Total: -1.00 -31.05 390.83 -9.49 -40.54 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -8.10 Total: 6.35 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -2.48 Total: -13.13 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.35 Total: -38.51 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.12 Total: -16.60 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.05 -9.49 -40.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183972782.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.832 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds