Wall clock time and date at job start Tue Mar 31 2020 12:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47242 * 2 1 4 4 H 1.08999 * 109.47301 * 179.82140 * 3 2 1 5 5 C 1.50698 * 109.46881 * 299.82687 * 3 2 1 6 6 H 1.07991 * 120.00392 * 120.00586 * 5 3 2 7 7 C 1.37883 * 119.99753 * 299.99616 * 5 3 2 8 8 N 1.31515 * 119.99930 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99991 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47367 * 59.99906 * 9 7 5 11 11 H 1.48501 * 109.47132 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46932 * 300.00110 * 9 7 5 13 13 N 1.46908 * 109.47165 * 59.82357 * 3 2 1 14 14 C 1.46899 * 110.99596 * 85.92455 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.56416 * 14 13 3 16 16 C 1.38267 * 119.94474 * 269.72677 * 15 14 13 17 17 C 1.38149 * 120.05375 * 179.72862 * 16 15 14 18 18 C 1.38732 * 119.94041 * 0.56837 * 17 16 15 19 19 O 1.35907 * 120.05383 * 179.68179 * 18 17 16 20 20 C 1.42903 * 116.99595 * 0.02676 * 19 18 17 21 21 C 1.53004 * 109.46976 * 179.97438 * 20 19 18 22 22 H 1.08997 * 109.82566 * 305.56853 * 21 20 19 23 23 C 1.54375 * 109.83139 * 184.58507 * 21 20 19 24 24 C 1.55311 * 102.25285 * 219.13243 * 23 21 20 25 25 C 1.54945 * 100.93951 * 34.13251 * 24 23 21 26 26 O 1.43242 * 109.82929 * 66.45009 * 21 20 19 27 27 C 1.38731 * 119.89327 * 359.70785 * 18 17 16 28 28 C 1.38139 * 119.94313 * 359.97438 * 27 18 17 29 29 H 1.09002 * 109.47158 * 175.59179 * 1 2 3 30 30 H 1.08998 * 109.46620 * 55.59099 * 1 2 3 31 31 H 1.09001 * 109.47256 * 295.59449 * 1 2 3 32 32 H 1.09004 * 109.46685 * 119.99605 * 2 1 3 33 33 H 1.08994 * 109.47358 * 239.99729 * 2 1 3 34 34 H 0.97001 * 119.99509 * 179.97438 * 8 7 5 35 35 H 1.00899 * 110.99575 * 209.88007 * 13 3 2 36 36 H 1.08995 * 109.47219 * 295.56247 * 14 13 3 37 37 H 1.08999 * 109.47280 * 55.56924 * 14 13 3 38 38 H 1.08001 * 119.97342 * 359.97438 * 16 15 14 39 39 H 1.07998 * 120.02583 * 180.25592 * 17 16 15 40 40 H 1.08997 * 109.47364 * 299.99635 * 20 19 18 41 41 H 1.08999 * 109.47749 * 60.00087 * 20 19 18 42 42 H 1.08995 * 110.84944 * 337.32126 * 23 21 20 43 43 H 1.08997 * 110.85104 * 100.94304 * 23 21 20 44 44 H 1.08999 * 111.12059 * 276.21336 * 24 23 21 45 45 H 1.09000 * 111.15882 * 152.07027 * 24 23 21 46 46 H 1.09000 * 110.30319 * 204.63902 * 25 24 23 47 47 H 1.08999 * 110.39176 * 82.52077 * 25 24 23 48 48 H 1.08001 * 120.02953 * 179.97438 * 27 18 17 49 49 H 1.08002 * 119.97404 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1300 1.4425 0.0032 5 6 1.5412 2.1516 -1.2326 6 1 0.9202 3.0298 -1.1363 7 6 1.8780 1.6792 -2.4835 8 7 2.6341 0.6096 -2.6008 9 14 1.2603 2.5586 -4.0114 10 1 1.7557 3.9584 -4.0112 11 1 1.7582 1.8569 -5.2217 12 1 -0.2247 2.5591 -4.0158 13 7 1.5469 2.1363 1.1974 14 6 2.4392 1.9094 2.3421 15 6 1.9627 2.7215 3.5188 16 6 2.4356 4.0071 3.7070 17 6 1.9961 4.7555 4.7818 18 6 1.0885 4.2119 5.6792 19 8 0.6596 4.9438 6.7410 20 6 1.1843 6.2666 6.8714 21 6 0.5902 6.9306 8.1153 22 1 -0.4982 6.8923 8.0706 23 6 1.0615 8.3981 8.2013 24 6 1.3090 8.5761 9.7242 25 6 1.8146 7.1625 10.1072 26 8 1.0521 6.2579 9.2926 27 6 0.6199 2.9197 5.4914 28 6 1.0574 2.1778 4.4114 29 1 -0.3633 -1.0246 -0.0790 30 1 -0.3632 0.5807 -0.8479 31 1 -0.3634 0.4439 0.9268 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 2.8706 0.2771 -3.4808 35 1 1.4288 3.1226 1.0207 36 1 2.4322 0.8514 2.6041 37 1 3.4526 2.2119 2.0784 38 1 3.1462 4.4279 3.0110 39 1 2.3627 5.7611 4.9261 40 1 2.2690 6.2194 6.9673 41 1 0.9226 6.8501 5.9887 42 1 1.9839 8.5429 7.6389 43 1 0.2830 9.0767 7.8529 44 1 0.3834 8.8173 10.2469 45 1 2.0722 9.3310 9.9132 46 1 1.6296 6.9679 11.1636 47 1 2.8776 7.0665 9.8860 48 1 -0.0864 2.4942 6.1889 49 1 0.6926 1.1719 4.2644 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184087664.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:09 Heat of formation + Delta-G solvation = -68.475531 kcal Electronic energy + Delta-G solvation = -26084.114255 eV Core-core repulsion = 22396.913734 eV Total energy + Delta-G solvation = -3687.200520 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.37257 -39.53294 -37.66387 -35.94654 -32.92626 -32.66163 -31.52029 -30.87694 -30.70454 -29.19250 -26.56089 -25.99290 -23.95296 -23.03846 -22.83290 -22.21016 -21.31130 -20.71437 -18.96593 -18.14424 -17.50679 -16.60718 -16.48210 -15.94524 -15.59895 -15.12642 -14.86079 -14.61190 -14.26702 -14.02622 -13.78383 -13.69844 -13.51931 -13.21751 -13.06487 -12.57731 -12.37676 -12.23480 -12.12010 -11.93432 -11.80894 -11.70139 -11.51291 -11.36121 -11.12863 -10.89534 -10.81677 -10.68113 -10.65513 -10.35293 -10.02086 -9.90038 -9.67026 -9.34213 -8.81126 -8.76405 -8.44862 -7.92086 -7.17951 -6.00101 -4.05573 1.54067 1.62300 3.00714 3.31558 3.36358 3.39100 3.43154 3.94839 3.95709 4.29383 4.38619 4.42016 4.63837 4.70279 4.80328 4.91899 4.98998 5.06224 5.10747 5.17966 5.24137 5.26440 5.30712 5.32924 5.44670 5.53505 5.59518 5.65619 5.70587 5.83432 6.04128 6.25571 6.33067 6.45601 6.53759 6.58413 6.61046 6.72113 6.89201 6.95439 6.98117 7.27194 7.34834 7.48969 7.53002 7.77926 7.81414 7.87426 8.30032 8.42508 8.69793 9.03860 9.58956 11.05597 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.024622 B = 0.002074 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.914055 B =13500.114729 C =14138.574705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.215 3.785 4 H 0.000 1.000 5 C -0.512 4.512 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.679 5.679 14 C 0.100 3.900 15 C -0.102 4.102 16 C -0.077 4.077 17 C -0.210 4.210 18 C 0.118 3.882 19 O -0.309 6.309 20 C 0.051 3.949 21 C 0.083 3.917 22 H 0.092 0.908 23 C -0.149 4.149 24 C -0.156 4.156 25 C 0.045 3.955 26 O -0.367 6.367 27 C -0.152 4.152 28 C -0.060 4.060 29 H 0.013 0.987 30 H 0.056 0.944 31 H 0.042 0.958 32 H 0.009 0.991 33 H 0.086 0.914 34 H 0.261 0.739 35 H 0.330 0.670 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.060 0.940 48 H 0.126 0.874 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.066 14.028 22.892 26.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.108 3.892 4 H 0.018 0.982 5 C -0.551 4.551 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.310 5.310 14 C -0.030 4.030 15 C -0.103 4.103 16 C -0.096 4.096 17 C -0.229 4.229 18 C 0.073 3.927 19 O -0.223 6.223 20 C -0.025 4.025 21 C 0.025 3.975 22 H 0.110 0.890 23 C -0.186 4.186 24 C -0.193 4.193 25 C -0.031 4.031 26 O -0.287 6.287 27 C -0.171 4.171 28 C -0.079 4.079 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.028 0.972 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.148 0.852 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.079 0.921 48 H 0.144 0.856 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.575 13.119 23.102 26.614 hybrid contribution 0.717 1.408 -1.358 2.084 sum -0.859 14.527 21.743 26.164 Atomic orbital electron populations 1.21450 0.97519 0.97369 1.01367 1.21432 0.95029 0.98242 0.99412 1.19165 0.92922 0.91527 0.85623 0.98220 1.21148 1.31622 1.11952 0.90344 0.92398 1.24890 0.95076 0.95030 0.98895 1.69877 1.36629 1.22672 1.23563 0.86633 0.79266 0.79596 0.82330 1.20440 1.21374 1.20213 1.60791 1.48517 1.15917 1.05772 1.20863 0.94115 0.98411 0.89570 1.19990 0.98233 0.94854 0.97223 1.20873 0.98713 0.93675 0.96290 1.21102 1.02644 1.00990 0.98167 1.18962 0.94750 0.91736 0.87254 1.86084 1.65889 1.26217 1.44073 1.23199 0.98723 0.82668 0.97879 1.22783 0.99646 0.90444 0.84607 0.89030 1.23110 1.02966 0.95258 0.97301 1.23275 1.02620 0.98093 0.95326 1.23438 0.95703 0.88008 0.95986 1.88567 1.70977 1.36228 1.32888 1.20395 1.03944 0.92301 1.00472 1.20886 0.94976 0.99702 0.92311 0.96824 0.92540 0.93924 0.97187 0.89558 0.92927 0.85240 0.91145 0.95544 0.86074 0.86180 0.91756 0.91071 0.89999 0.89263 0.90080 0.89619 0.89532 0.92136 0.85571 0.85222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 9.52 37.16 0.35 -2.37 16 2 C -0.10 -2.50 5.59 -26.73 -0.15 -2.65 16 3 C 0.22 5.34 2.30 -68.86 -0.16 5.18 16 4 H 0.00 0.01 7.71 -51.93 -0.40 -0.40 16 5 C -0.51 -13.72 7.26 -34.44 -0.25 -13.97 16 6 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -25.10 11.32 55.43 0.63 -24.47 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 N -0.68 -14.32 5.64 -109.22 -0.62 -14.94 16 14 C 0.10 1.81 5.66 -4.97 -0.03 1.78 16 15 C -0.10 -1.64 5.35 -104.60 -0.56 -2.20 16 16 C -0.08 -1.12 9.69 -39.60 -0.38 -1.51 16 17 C -0.21 -2.82 9.04 -39.43 -0.36 -3.17 16 18 C 0.12 1.67 6.69 -39.22 -0.26 1.41 16 19 O -0.31 -4.14 10.12 -22.01 -0.22 -4.36 16 20 C 0.05 0.50 4.27 37.16 0.16 0.66 16 21 C 0.08 0.70 3.81 -26.01 -0.10 0.60 16 22 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 23 C -0.15 -0.79 6.54 -24.79 -0.16 -0.95 16 24 C -0.16 -0.74 7.16 -24.48 -0.18 -0.91 16 25 C 0.05 0.30 7.78 38.18 0.30 0.60 16 26 O -0.37 -3.86 11.00 -37.80 -0.42 -4.27 16 27 C -0.15 -2.18 9.99 -39.44 -0.39 -2.58 16 28 C -0.06 -0.90 9.69 -39.61 -0.38 -1.29 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 1.38 7.07 -51.93 -0.37 1.01 16 31 H 0.04 0.92 7.74 -51.93 -0.40 0.52 16 32 H 0.01 0.22 7.60 -51.93 -0.39 -0.18 16 33 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.33 6.97 8.13 -39.29 -0.32 6.65 16 36 H 0.07 1.29 7.55 -51.93 -0.39 0.90 16 37 H 0.03 0.49 7.89 -51.93 -0.41 0.08 16 38 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.12 1.31 6.30 -52.49 -0.33 0.98 16 40 H 0.06 0.60 7.66 -51.93 -0.40 0.21 16 41 H 0.07 0.59 7.66 -51.93 -0.40 0.19 16 42 H 0.08 0.38 7.85 -51.93 -0.41 -0.03 16 43 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 49 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 390.90 15.07 5.89 5.89 Total: -1.00 -30.10 390.90 -10.70 -40.80 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -8.30 Total: 4.95 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -2.65 Total: -19.74 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.01 Total: -39.41 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.64 Total: -8.64 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.10 -10.70 -40.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184087664.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.674 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds