Wall clock time and date at job start Tue Mar 31 2020 12:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47242 * 2 1 4 4 H 1.08999 * 109.47301 * 179.82140 * 3 2 1 5 5 C 1.50698 * 109.46881 * 299.82687 * 3 2 1 6 6 H 1.07991 * 120.00392 * 120.00586 * 5 3 2 7 7 C 1.37883 * 119.99753 * 299.99616 * 5 3 2 8 8 N 1.31515 * 119.99930 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99991 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47367 * 59.99906 * 9 7 5 11 11 H 1.48501 * 109.47132 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46932 * 300.00110 * 9 7 5 13 13 N 1.46908 * 109.47165 * 59.82357 * 3 2 1 14 14 C 1.46899 * 110.99596 * 85.92455 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.56416 * 14 13 3 16 16 C 1.38267 * 119.94474 * 269.72677 * 15 14 13 17 17 C 1.38149 * 120.05375 * 179.72862 * 16 15 14 18 18 C 1.38732 * 119.94041 * 0.56837 * 17 16 15 19 19 O 1.35907 * 120.05383 * 179.68179 * 18 17 16 20 20 C 1.42903 * 116.99595 * 0.02676 * 19 18 17 21 21 C 1.53004 * 109.46976 * 179.97438 * 20 19 18 22 22 H 1.08997 * 109.82566 * 305.56853 * 21 20 19 23 23 C 1.54375 * 109.83139 * 184.58507 * 21 20 19 24 24 C 1.55311 * 102.25285 * 219.13243 * 23 21 20 25 25 C 1.54945 * 100.93951 * 34.13251 * 24 23 21 26 26 O 1.43242 * 109.82929 * 66.45009 * 21 20 19 27 27 C 1.38731 * 119.89327 * 359.70785 * 18 17 16 28 28 C 1.38139 * 119.94313 * 359.97438 * 27 18 17 29 29 H 1.09002 * 109.47158 * 175.59179 * 1 2 3 30 30 H 1.08998 * 109.46620 * 55.59099 * 1 2 3 31 31 H 1.09001 * 109.47256 * 295.59449 * 1 2 3 32 32 H 1.09004 * 109.46685 * 119.99605 * 2 1 3 33 33 H 1.08994 * 109.47358 * 239.99729 * 2 1 3 34 34 H 0.97001 * 119.99509 * 179.97438 * 8 7 5 35 35 H 1.00899 * 110.99575 * 209.88007 * 13 3 2 36 36 H 1.08995 * 109.47219 * 295.56247 * 14 13 3 37 37 H 1.08999 * 109.47280 * 55.56924 * 14 13 3 38 38 H 1.08001 * 119.97342 * 359.97438 * 16 15 14 39 39 H 1.07998 * 120.02583 * 180.25592 * 17 16 15 40 40 H 1.08997 * 109.47364 * 299.99635 * 20 19 18 41 41 H 1.08999 * 109.47749 * 60.00087 * 20 19 18 42 42 H 1.08995 * 110.84944 * 337.32126 * 23 21 20 43 43 H 1.08997 * 110.85104 * 100.94304 * 23 21 20 44 44 H 1.08999 * 111.12059 * 276.21336 * 24 23 21 45 45 H 1.09000 * 111.15882 * 152.07027 * 24 23 21 46 46 H 1.09000 * 110.30319 * 204.63902 * 25 24 23 47 47 H 1.08999 * 110.39176 * 82.52077 * 25 24 23 48 48 H 1.08001 * 120.02953 * 179.97438 * 27 18 17 49 49 H 1.08002 * 119.97404 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1300 1.4425 0.0032 5 6 1.5412 2.1516 -1.2326 6 1 0.9202 3.0298 -1.1363 7 6 1.8780 1.6792 -2.4835 8 7 2.6341 0.6096 -2.6008 9 14 1.2603 2.5586 -4.0114 10 1 1.7557 3.9584 -4.0112 11 1 1.7582 1.8569 -5.2217 12 1 -0.2247 2.5591 -4.0158 13 7 1.5469 2.1363 1.1974 14 6 2.4392 1.9094 2.3421 15 6 1.9627 2.7215 3.5188 16 6 2.4356 4.0071 3.7070 17 6 1.9961 4.7555 4.7818 18 6 1.0885 4.2119 5.6792 19 8 0.6596 4.9438 6.7410 20 6 1.1843 6.2666 6.8714 21 6 0.5902 6.9306 8.1153 22 1 -0.4982 6.8923 8.0706 23 6 1.0615 8.3981 8.2013 24 6 1.3090 8.5761 9.7242 25 6 1.8146 7.1625 10.1072 26 8 1.0521 6.2579 9.2926 27 6 0.6199 2.9197 5.4914 28 6 1.0574 2.1778 4.4114 29 1 -0.3633 -1.0246 -0.0790 30 1 -0.3632 0.5807 -0.8479 31 1 -0.3634 0.4439 0.9268 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 2.8706 0.2771 -3.4808 35 1 1.4288 3.1226 1.0207 36 1 2.4322 0.8514 2.6041 37 1 3.4526 2.2119 2.0784 38 1 3.1462 4.4279 3.0110 39 1 2.3627 5.7611 4.9261 40 1 2.2690 6.2194 6.9673 41 1 0.9226 6.8501 5.9887 42 1 1.9839 8.5429 7.6389 43 1 0.2830 9.0767 7.8529 44 1 0.3834 8.8173 10.2469 45 1 2.0722 9.3310 9.9132 46 1 1.6296 6.9679 11.1636 47 1 2.8776 7.0665 9.8860 48 1 -0.0864 2.4942 6.1889 49 1 0.6926 1.1719 4.2644 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184087664.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:08 Heat of formation + Delta-G solvation = -85.377783 kcal Electronic energy + Delta-G solvation = -26084.847191 eV Core-core repulsion = 22396.913734 eV Total energy + Delta-G solvation = -3687.933457 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.26772 -40.30745 -38.85489 -37.62891 -34.64361 -33.25856 -32.91932 -32.13196 -31.70261 -30.57796 -28.20218 -26.91518 -25.53366 -24.85135 -23.79440 -22.74371 -22.13976 -21.77377 -20.88692 -19.13269 -18.44744 -18.10967 -17.33049 -16.93524 -16.71659 -16.40542 -16.30696 -15.85018 -15.47003 -15.27219 -15.15053 -14.88927 -14.54263 -14.37748 -14.25418 -13.94655 -13.74170 -13.39531 -13.36567 -13.09139 -12.84624 -12.73028 -12.69535 -12.44000 -12.37627 -12.25929 -12.18024 -11.90736 -11.84196 -11.71571 -11.68172 -11.54184 -11.26607 -10.78396 -10.54076 -10.51248 -9.92045 -9.13893 -8.88647 -8.07712 -6.20026 0.42891 0.46275 1.43362 1.45024 1.52064 2.16767 2.43729 2.79709 2.87221 3.20623 3.50822 3.70467 3.81657 3.88856 3.91252 3.96407 4.06532 4.11752 4.15394 4.29742 4.37012 4.40443 4.48021 4.56502 4.64304 4.69166 4.77467 4.79496 4.82357 4.85528 4.89539 4.93356 4.97555 5.01649 5.13399 5.22712 5.31766 5.32617 5.39316 5.42304 5.58523 5.72714 5.77890 5.82873 5.84706 5.91466 6.05618 6.30597 6.47740 6.52430 6.81438 7.04686 7.48422 8.96853 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.024622 B = 0.002074 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.914055 B =13500.114729 C =14138.574705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.099 4.099 3 C 0.221 3.779 4 H -0.035 1.035 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.955 3.045 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.673 5.673 14 C 0.107 3.893 15 C -0.119 4.119 16 C -0.080 4.080 17 C -0.206 4.206 18 C 0.116 3.884 19 O -0.324 6.324 20 C 0.044 3.956 21 C 0.078 3.922 22 H 0.086 0.914 23 C -0.143 4.143 24 C -0.149 4.149 25 C 0.035 3.965 26 O -0.402 6.402 27 C -0.161 4.161 28 C -0.064 4.064 29 H 0.032 0.968 30 H 0.035 0.965 31 H 0.051 0.949 32 H 0.020 0.980 33 H 0.058 0.942 34 H 0.260 0.740 35 H 0.330 0.670 36 H 0.067 0.933 37 H 0.020 0.980 38 H 0.129 0.871 39 H 0.147 0.853 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.105 0.895 46 H 0.093 0.907 47 H 0.063 0.937 48 H 0.138 0.862 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.688 16.089 23.838 28.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.138 4.138 3 C 0.113 3.887 4 H -0.017 1.017 5 C -0.561 4.561 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.555 5.555 9 Si 0.781 3.219 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.304 5.304 14 C -0.022 4.022 15 C -0.120 4.120 16 C -0.099 4.099 17 C -0.225 4.225 18 C 0.071 3.929 19 O -0.238 6.238 20 C -0.031 4.031 21 C 0.021 3.979 22 H 0.104 0.896 23 C -0.180 4.180 24 C -0.186 4.186 25 C -0.041 4.041 26 O -0.322 6.322 27 C -0.179 4.179 28 C -0.083 4.083 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.147 0.853 36 H 0.085 0.915 37 H 0.038 0.962 38 H 0.147 0.853 39 H 0.164 0.836 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.123 0.877 44 H 0.103 0.897 45 H 0.123 0.877 46 H 0.111 0.889 47 H 0.081 0.919 48 H 0.156 0.844 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.200 15.198 24.072 28.553 hybrid contribution 0.933 0.799 -1.512 1.948 sum -1.267 15.997 22.560 27.685 Atomic orbital electron populations 1.21307 0.96010 0.98302 1.00839 1.21321 0.96257 0.97702 0.98529 1.18962 0.90782 0.92221 0.86775 1.01715 1.21405 1.31428 1.11982 0.91334 0.92566 1.25635 0.95273 0.95698 1.01721 1.70015 1.37597 1.23858 1.24048 0.85659 0.78753 0.78663 0.78825 1.19739 1.21213 1.19787 1.60714 1.48970 1.15588 1.05098 1.20773 0.93332 0.98750 0.89370 1.19803 0.99751 0.95487 0.96964 1.21000 0.98767 0.93271 0.96871 1.21321 1.01987 1.01969 0.97216 1.19130 0.94454 0.91840 0.87463 1.86086 1.66214 1.27859 1.43644 1.23507 0.99050 0.81246 0.99346 1.22909 0.99360 0.92091 0.83572 0.89573 1.23136 1.03823 0.93173 0.97894 1.23275 1.03332 0.97161 0.94821 1.23645 0.95609 0.88868 0.95969 1.88527 1.71562 1.38211 1.33901 1.20562 1.04236 0.92663 1.00473 1.20945 0.94820 1.00075 0.92410 0.94895 0.94626 0.92959 0.96086 0.92361 0.93035 0.85255 0.91479 0.96180 0.85350 0.83577 0.91361 0.89348 0.89077 0.87684 0.89672 0.87700 0.88922 0.91858 0.84439 0.84774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.80 9.52 71.98 0.69 -4.12 16 2 C -0.10 -4.89 5.59 30.60 0.17 -4.72 16 3 C 0.22 11.16 2.30 44.17 0.10 11.26 16 4 H -0.03 -1.96 7.71 -2.39 -0.02 -1.98 16 5 C -0.52 -28.26 7.26 25.60 0.19 -28.07 16 6 H 0.06 3.00 7.60 -2.92 -0.02 2.97 16 7 C 0.02 0.87 5.30 84.66 0.45 1.32 16 8 N -0.92 -52.57 11.32 21.45 0.24 -52.32 16 9 Si 0.96 43.43 29.54 68.60 2.03 45.45 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 13 N -0.67 -28.51 5.64 -499.45 -2.82 -31.32 16 14 C 0.11 3.90 5.66 85.56 0.48 4.39 16 15 C -0.12 -3.76 5.35 -19.85 -0.11 -3.86 16 16 C -0.08 -2.27 9.69 22.26 0.22 -2.05 16 17 C -0.21 -5.15 9.04 22.37 0.20 -4.95 16 18 C 0.12 3.14 6.69 22.51 0.15 3.29 16 19 O -0.32 -8.27 10.12 -90.04 -0.91 -9.18 16 20 C 0.04 0.77 4.27 71.98 0.31 1.08 16 21 C 0.08 1.21 3.81 31.06 0.12 1.33 16 22 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 23 C -0.14 -1.15 6.54 31.85 0.21 -0.94 16 24 C -0.15 -1.04 7.16 32.05 0.23 -0.81 16 25 C 0.03 0.43 7.78 72.65 0.56 0.99 16 26 O -0.40 -8.12 11.00 -146.52 -1.61 -9.73 16 27 C -0.16 -4.44 9.99 22.36 0.22 -4.22 16 28 C -0.06 -1.88 9.69 22.25 0.22 -1.66 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.03 1.72 7.07 -2.39 -0.02 1.70 16 31 H 0.05 2.21 7.74 -2.39 -0.02 2.19 16 32 H 0.02 0.95 7.60 -2.39 -0.02 0.93 16 33 H 0.06 3.21 6.06 -2.39 -0.01 3.19 16 34 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 35 H 0.33 13.93 8.13 -89.69 -0.73 13.20 16 36 H 0.07 2.47 7.55 -2.39 -0.02 2.45 16 37 H 0.02 0.76 7.89 -2.39 -0.02 0.74 16 38 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 39 H 0.15 2.79 6.30 -2.91 -0.02 2.78 16 40 H 0.07 1.14 7.66 -2.39 -0.02 1.13 16 41 H 0.09 1.24 7.66 -2.39 -0.02 1.22 16 42 H 0.09 0.57 7.85 -2.39 -0.02 0.56 16 43 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 49 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -64.66 390.90 1.53 -63.13 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.20 Total: 25.73 kcal Atomic # 6 Polarization: -36.16 SS G_CDS: 4.41 Total: -31.75 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -2.57 Total: -83.65 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -2.52 Total: -18.91 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -64.66 1.53 -63.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184087664.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.251 kcal (2) G-P(sol) polarization free energy of solvation -64.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds