Wall clock time and date at job start Tue Mar 31 2020 12:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47124 * 2 1 4 4 H 1.09003 * 109.47129 * 179.24720 * 3 2 1 5 5 C 1.50697 * 109.47161 * 299.25164 * 3 2 1 6 6 H 1.07997 * 120.00122 * 120.00374 * 5 3 2 7 7 C 1.37879 * 120.00161 * 299.99211 * 5 3 2 8 8 N 1.31510 * 120.00241 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 119.99867 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47061 * 89.99419 * 9 7 5 11 11 H 1.48494 * 109.47360 * 209.99427 * 9 7 5 12 12 H 1.48503 * 109.47145 * 329.99579 * 9 7 5 13 13 N 1.46908 * 109.46792 * 59.25054 * 3 2 1 14 14 C 1.46899 * 110.99596 * 85.92855 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.56416 * 14 13 3 16 16 C 1.38267 * 119.94474 * 269.72677 * 15 14 13 17 17 C 1.38149 * 120.05375 * 179.72862 * 16 15 14 18 18 C 1.38733 * 119.94145 * 0.54459 * 17 16 15 19 19 O 1.35906 * 120.05327 * 179.75008 * 18 17 16 20 20 C 1.42903 * 116.99700 * 359.97438 * 19 18 17 21 21 C 1.53000 * 109.46711 * 180.02562 * 20 19 18 22 22 H 1.09006 * 110.27361 * 54.30231 * 21 20 19 23 23 C 1.54944 * 110.31035 * 176.39355 * 21 20 19 24 24 C 1.55418 * 100.89647 * 155.28817 * 23 21 20 25 25 C 1.54381 * 102.30399 * 325.99135 * 24 23 21 26 26 O 1.43231 * 107.59219 * 21.28643 * 25 24 23 27 27 C 1.38731 * 119.89233 * 359.73157 * 18 17 16 28 28 C 1.38151 * 119.94092 * 359.97438 * 27 18 17 29 29 H 1.09005 * 109.46978 * 175.55342 * 1 2 3 30 30 H 1.08999 * 109.47207 * 55.55428 * 1 2 3 31 31 H 1.08993 * 109.46725 * 295.55489 * 1 2 3 32 32 H 1.08997 * 109.47105 * 120.00878 * 2 1 3 33 33 H 1.09007 * 109.46643 * 240.00341 * 2 1 3 34 34 H 0.97000 * 119.99950 * 180.02562 * 8 7 5 35 35 H 1.00899 * 110.99575 * 209.88407 * 13 3 2 36 36 H 1.08995 * 109.47219 * 295.56247 * 14 13 3 37 37 H 1.08999 * 109.47280 * 55.56924 * 14 13 3 38 38 H 1.08000 * 119.97411 * 0.02562 * 16 15 14 39 39 H 1.07998 * 120.02678 * 180.27426 * 17 16 15 40 40 H 1.08996 * 109.47238 * 299.99858 * 20 19 18 41 41 H 1.08993 * 109.46785 * 60.00474 * 20 19 18 42 42 H 1.09002 * 111.12803 * 273.28378 * 23 21 20 43 43 H 1.09001 * 111.12794 * 37.43890 * 23 21 20 44 44 H 1.08993 * 110.88276 * 207.75311 * 24 23 21 45 45 H 1.09004 * 110.93046 * 84.24822 * 24 23 21 46 46 H 1.09000 * 109.83046 * 261.76888 * 25 24 23 47 47 H 1.09002 * 109.82781 * 140.79918 * 25 24 23 48 48 H 1.08002 * 120.02857 * 179.97438 * 27 18 17 49 49 H 1.08003 * 119.96769 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1300 1.4425 0.0135 5 6 1.5530 2.1475 -1.2396 6 1 0.9310 3.0260 -1.1520 7 6 1.9015 1.6711 -2.4856 8 7 1.4760 2.2861 -3.5674 9 14 2.9770 0.1514 -2.6372 10 1 2.1187 -1.0594 -2.6882 11 1 3.7845 0.2383 -3.8804 12 1 3.8829 0.0669 -1.4635 13 7 1.5356 2.1402 1.1904 14 6 2.4170 1.9172 2.3442 15 6 1.9295 2.7331 3.5137 16 6 2.4005 4.0194 3.7021 17 6 1.9508 4.7713 4.7702 18 6 1.0344 4.2307 5.6606 19 8 0.5944 4.9666 6.7150 20 6 1.1179 6.2898 6.8461 21 6 0.5118 6.9579 8.0819 22 1 0.6702 6.3363 8.9633 23 6 1.1340 8.3609 8.2945 24 6 0.0034 9.0654 9.0951 25 6 -1.2696 8.4341 8.4916 26 8 -0.8912 7.1936 7.8837 27 6 0.5677 2.9379 5.4726 28 6 1.0159 2.1922 4.3994 29 1 -0.3633 -1.0246 -0.0797 30 1 -0.3633 0.5813 -0.8475 31 1 -0.3632 0.4433 0.9271 32 1 1.8934 -0.5140 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.7210 1.9507 -4.4440 35 1 1.4191 3.1259 1.0094 36 1 2.4078 0.8601 2.6096 37 1 3.4329 2.2189 2.0890 38 1 3.1169 4.4383 3.0109 39 1 2.3156 5.7775 4.9144 40 1 2.2016 6.2428 6.9537 41 1 0.8656 6.8699 5.9585 42 1 2.0518 8.2992 8.8792 43 1 1.3102 8.8609 7.3421 44 1 0.0203 10.1420 8.9258 45 1 0.0812 8.8404 10.1588 46 1 -1.6922 9.1006 7.7398 47 1 -2.0010 8.2520 9.2791 48 1 -0.1454 2.5147 6.1646 49 1 0.6531 1.1855 4.2529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184087697.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:15 Heat of formation + Delta-G solvation = -59.919868 kcal Electronic energy + Delta-G solvation = -26126.551290 eV Core-core repulsion = 22439.721771 eV Total energy + Delta-G solvation = -3686.829519 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.36474 -39.55368 -37.77331 -36.22926 -32.95183 -32.64911 -31.70265 -31.23995 -30.78220 -29.36997 -26.81598 -26.10294 -24.02637 -23.06963 -22.87668 -22.16384 -21.42264 -20.78266 -19.29745 -18.19740 -17.46874 -16.69688 -16.53742 -15.90923 -15.70253 -15.50274 -15.03996 -14.74403 -14.33467 -14.00981 -13.79815 -13.76746 -13.63054 -13.36264 -13.08168 -12.75234 -12.60730 -12.45302 -12.25377 -12.14598 -11.91985 -11.78496 -11.68384 -11.36149 -11.31579 -10.95286 -10.88950 -10.72681 -10.55767 -10.44430 -10.14807 -9.93160 -9.88979 -9.30683 -8.94023 -8.85622 -8.55986 -7.99388 -7.41421 -6.08500 -4.07123 1.48914 1.55979 2.98388 3.28387 3.34811 3.37290 3.39154 3.88973 3.94893 4.31718 4.39156 4.39853 4.64537 4.66828 4.77503 4.91835 4.94708 5.03141 5.05382 5.11925 5.17879 5.24150 5.28220 5.36900 5.39559 5.43945 5.52596 5.57265 5.62638 5.76850 5.93477 6.09387 6.17983 6.24923 6.25958 6.39379 6.47134 6.51096 6.61639 6.75827 6.88234 6.89345 6.95333 7.13946 7.27126 7.43955 7.52021 7.63635 7.95206 8.37305 8.63284 8.96691 9.54076 11.04339 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025859 B = 0.002095 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.523419 B =13358.812152 C =13669.560357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 C 0.184 3.816 4 H 0.000 1.000 5 C -0.512 4.512 6 H 0.078 0.922 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.269 1.269 13 N -0.669 5.669 14 C 0.097 3.903 15 C -0.105 4.105 16 C -0.075 4.075 17 C -0.210 4.210 18 C 0.120 3.880 19 O -0.310 6.310 20 C 0.062 3.938 21 C 0.084 3.916 22 H 0.082 0.918 23 C -0.149 4.149 24 C -0.155 4.155 25 C 0.047 3.953 26 O -0.370 6.370 27 C -0.152 4.152 28 C -0.059 4.059 29 H 0.019 0.981 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.030 0.970 33 H 0.040 0.960 34 H 0.264 0.736 35 H 0.340 0.660 36 H 0.071 0.929 37 H 0.029 0.971 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.127 0.873 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.788 10.538 26.076 28.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.150 4.150 3 C 0.075 3.925 4 H 0.018 0.982 5 C -0.551 4.551 6 H 0.096 0.904 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.194 1.194 13 N -0.301 5.301 14 C -0.032 4.032 15 C -0.106 4.106 16 C -0.094 4.094 17 C -0.228 4.228 18 C 0.075 3.925 19 O -0.224 6.224 20 C -0.014 4.014 21 C 0.026 3.974 22 H 0.099 0.901 23 C -0.187 4.187 24 C -0.192 4.192 25 C -0.030 4.030 26 O -0.289 6.289 27 C -0.171 4.171 28 C -0.078 4.078 29 H 0.038 0.962 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.158 0.842 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.145 0.855 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.081 9.849 26.076 27.874 hybrid contribution 1.593 0.064 -0.508 1.674 sum 1.674 9.913 25.568 27.474 Atomic orbital electron populations 1.21468 0.95527 0.98272 1.02957 1.21742 0.97422 0.98144 0.97726 1.19610 0.92812 0.91369 0.88695 0.98215 1.21030 1.32357 1.13248 0.88424 0.90370 1.24900 0.95543 0.96775 0.95749 1.69888 1.45443 1.40495 0.97816 0.86857 0.80820 0.83830 0.76735 1.20384 1.22617 1.19422 1.60584 1.48355 1.16615 1.04515 1.20898 0.94179 0.98476 0.89624 1.19908 0.98513 0.94924 0.97233 1.20878 0.98697 0.93553 0.96245 1.21119 1.02445 1.00980 0.98289 1.18960 0.94383 0.91578 0.87546 1.86082 1.65726 1.25888 1.44673 1.22919 0.97645 0.82362 0.98442 1.22994 0.81875 0.95593 0.96948 0.90056 1.23266 0.99173 0.94524 1.01751 1.23134 0.94270 1.01287 1.00557 1.23164 0.96721 0.85816 0.97260 1.88553 1.23494 1.39047 1.77813 1.20396 1.03763 0.92338 1.00609 1.20869 0.94871 0.99699 0.92366 0.96154 0.91386 0.92660 0.95099 0.94164 0.92632 0.84171 0.91108 0.95328 0.85971 0.86026 0.90807 0.91221 0.89280 0.89781 0.89690 0.90299 0.91117 0.91245 0.85525 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.52 37.16 0.35 -2.31 16 2 C -0.11 -2.50 5.29 -26.73 -0.14 -2.64 16 3 C 0.18 4.30 1.89 -68.86 -0.13 4.17 16 4 H 0.00 0.01 6.77 -51.93 -0.35 -0.34 16 5 C -0.51 -14.05 7.87 -34.44 -0.27 -14.32 16 6 H 0.08 2.33 7.85 -52.49 -0.41 1.92 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 9 Si 0.89 22.07 24.38 -169.99 -4.14 17.93 16 10 H -0.28 -6.77 6.86 56.52 0.39 -6.39 16 11 H -0.30 -7.44 7.11 56.52 0.40 -7.03 16 12 H -0.27 -6.46 6.53 56.52 0.37 -6.09 16 13 N -0.67 -13.50 5.61 -109.22 -0.61 -14.11 16 14 C 0.10 1.65 5.66 -4.97 -0.03 1.62 16 15 C -0.11 -1.59 5.35 -104.60 -0.56 -2.15 16 16 C -0.08 -1.05 9.69 -39.60 -0.38 -1.43 16 17 C -0.21 -2.70 9.04 -39.43 -0.36 -3.06 16 18 C 0.12 1.64 6.69 -39.22 -0.26 1.38 16 19 O -0.31 -4.03 10.14 -20.17 -0.20 -4.24 16 20 C 0.06 0.59 4.45 37.16 0.17 0.75 16 21 C 0.08 0.70 3.72 -25.71 -0.10 0.60 16 22 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 23 C -0.15 -0.79 6.58 -24.42 -0.16 -0.95 16 24 C -0.15 -0.74 7.02 -24.72 -0.17 -0.91 16 25 C 0.05 0.33 7.80 37.88 0.30 0.63 16 26 O -0.37 -3.99 11.04 -35.96 -0.40 -4.39 16 27 C -0.15 -2.09 9.99 -39.43 -0.39 -2.48 16 28 C -0.06 -0.85 9.69 -39.60 -0.38 -1.23 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 1.63 7.09 -51.93 -0.37 1.26 16 31 H 0.05 1.12 7.73 -51.93 -0.40 0.72 16 32 H 0.03 0.62 7.62 -51.93 -0.40 0.22 16 33 H 0.04 0.95 3.26 -51.92 -0.17 0.78 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.34 7.03 8.13 -39.29 -0.32 6.71 16 36 H 0.07 1.17 7.56 -51.93 -0.39 0.77 16 37 H 0.03 0.48 7.89 -51.93 -0.41 0.08 16 38 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.12 1.27 6.30 -52.49 -0.33 0.94 16 40 H 0.07 0.55 7.66 -51.93 -0.40 0.15 16 41 H 0.07 0.67 7.66 -51.93 -0.40 0.27 16 42 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.42 8.06 -51.93 -0.42 0.00 16 44 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 49 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 384.38 15.07 5.79 5.79 Total: -1.00 -31.60 384.38 -9.59 -41.19 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -8.17 Total: 4.63 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -2.62 Total: -20.37 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.16 Total: -40.55 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.60 Total: -8.63 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.14 Total: 17.93 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.60 -9.59 -41.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184087697.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.728 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds