Wall clock time and date at job start Tue Mar 31 2020 12:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47124 * 2 1 4 4 H 1.09003 * 109.47129 * 179.24720 * 3 2 1 5 5 C 1.50697 * 109.47161 * 299.25164 * 3 2 1 6 6 H 1.07997 * 120.00122 * 120.00374 * 5 3 2 7 7 C 1.37879 * 120.00161 * 299.99211 * 5 3 2 8 8 N 1.31510 * 120.00241 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 119.99867 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47061 * 89.99419 * 9 7 5 11 11 H 1.48494 * 109.47360 * 209.99427 * 9 7 5 12 12 H 1.48503 * 109.47145 * 329.99579 * 9 7 5 13 13 N 1.46908 * 109.46792 * 59.25054 * 3 2 1 14 14 C 1.46899 * 110.99596 * 85.92855 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.56416 * 14 13 3 16 16 C 1.38267 * 119.94474 * 269.72677 * 15 14 13 17 17 C 1.38149 * 120.05375 * 179.72862 * 16 15 14 18 18 C 1.38733 * 119.94145 * 0.54459 * 17 16 15 19 19 O 1.35906 * 120.05327 * 179.75008 * 18 17 16 20 20 C 1.42903 * 116.99700 * 359.97438 * 19 18 17 21 21 C 1.53000 * 109.46711 * 180.02562 * 20 19 18 22 22 H 1.09006 * 110.27361 * 54.30231 * 21 20 19 23 23 C 1.54944 * 110.31035 * 176.39355 * 21 20 19 24 24 C 1.55418 * 100.89647 * 155.28817 * 23 21 20 25 25 C 1.54381 * 102.30399 * 325.99135 * 24 23 21 26 26 O 1.43231 * 107.59219 * 21.28643 * 25 24 23 27 27 C 1.38731 * 119.89233 * 359.73157 * 18 17 16 28 28 C 1.38151 * 119.94092 * 359.97438 * 27 18 17 29 29 H 1.09005 * 109.46978 * 175.55342 * 1 2 3 30 30 H 1.08999 * 109.47207 * 55.55428 * 1 2 3 31 31 H 1.08993 * 109.46725 * 295.55489 * 1 2 3 32 32 H 1.08997 * 109.47105 * 120.00878 * 2 1 3 33 33 H 1.09007 * 109.46643 * 240.00341 * 2 1 3 34 34 H 0.97000 * 119.99950 * 180.02562 * 8 7 5 35 35 H 1.00899 * 110.99575 * 209.88407 * 13 3 2 36 36 H 1.08995 * 109.47219 * 295.56247 * 14 13 3 37 37 H 1.08999 * 109.47280 * 55.56924 * 14 13 3 38 38 H 1.08000 * 119.97411 * 0.02562 * 16 15 14 39 39 H 1.07998 * 120.02678 * 180.27426 * 17 16 15 40 40 H 1.08996 * 109.47238 * 299.99858 * 20 19 18 41 41 H 1.08993 * 109.46785 * 60.00474 * 20 19 18 42 42 H 1.09002 * 111.12803 * 273.28378 * 23 21 20 43 43 H 1.09001 * 111.12794 * 37.43890 * 23 21 20 44 44 H 1.08993 * 110.88276 * 207.75311 * 24 23 21 45 45 H 1.09004 * 110.93046 * 84.24822 * 24 23 21 46 46 H 1.09000 * 109.83046 * 261.76888 * 25 24 23 47 47 H 1.09002 * 109.82781 * 140.79918 * 25 24 23 48 48 H 1.08002 * 120.02857 * 179.97438 * 27 18 17 49 49 H 1.08003 * 119.96769 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1300 1.4425 0.0135 5 6 1.5530 2.1475 -1.2396 6 1 0.9310 3.0260 -1.1520 7 6 1.9015 1.6711 -2.4856 8 7 1.4760 2.2861 -3.5674 9 14 2.9770 0.1514 -2.6372 10 1 2.1187 -1.0594 -2.6882 11 1 3.7845 0.2383 -3.8804 12 1 3.8829 0.0669 -1.4635 13 7 1.5356 2.1402 1.1904 14 6 2.4170 1.9172 2.3442 15 6 1.9295 2.7331 3.5137 16 6 2.4005 4.0194 3.7021 17 6 1.9508 4.7713 4.7702 18 6 1.0344 4.2307 5.6606 19 8 0.5944 4.9666 6.7150 20 6 1.1179 6.2898 6.8461 21 6 0.5118 6.9579 8.0819 22 1 0.6702 6.3363 8.9633 23 6 1.1340 8.3609 8.2945 24 6 0.0034 9.0654 9.0951 25 6 -1.2696 8.4341 8.4916 26 8 -0.8912 7.1936 7.8837 27 6 0.5677 2.9379 5.4726 28 6 1.0159 2.1922 4.3994 29 1 -0.3633 -1.0246 -0.0797 30 1 -0.3633 0.5813 -0.8475 31 1 -0.3632 0.4433 0.9271 32 1 1.8934 -0.5140 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.7210 1.9507 -4.4440 35 1 1.4191 3.1259 1.0094 36 1 2.4078 0.8601 2.6096 37 1 3.4329 2.2189 2.0890 38 1 3.1169 4.4383 3.0109 39 1 2.3156 5.7775 4.9144 40 1 2.2016 6.2428 6.9537 41 1 0.8656 6.8699 5.9585 42 1 2.0518 8.2992 8.8792 43 1 1.3102 8.8609 7.3421 44 1 0.0203 10.1420 8.9258 45 1 0.0812 8.8404 10.1588 46 1 -1.6922 9.1006 7.7398 47 1 -2.0010 8.2520 9.2791 48 1 -0.1454 2.5147 6.1646 49 1 0.6531 1.1855 4.2529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184087697.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:14 Heat of formation + Delta-G solvation = -80.029474 kcal Electronic energy + Delta-G solvation = -26127.423308 eV Core-core repulsion = 22439.721771 eV Total energy + Delta-G solvation = -3687.701537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.24794 -40.29246 -38.94018 -37.79001 -34.64716 -33.44766 -33.18709 -32.20600 -31.73972 -30.65319 -28.54348 -26.90360 -25.41374 -24.91889 -23.80211 -22.67611 -22.21790 -21.81793 -21.10785 -19.14715 -18.63133 -18.07941 -17.53280 -17.21313 -16.57812 -16.48516 -16.27913 -15.72269 -15.53579 -15.50629 -15.19618 -15.02366 -14.73181 -14.50758 -14.34602 -14.22987 -13.86685 -13.51651 -13.37101 -13.15974 -13.00562 -12.73308 -12.69428 -12.46917 -12.32425 -12.28022 -12.10023 -11.98088 -11.84691 -11.77707 -11.70938 -11.62403 -11.21866 -10.92051 -10.67564 -10.52703 -9.91051 -9.19028 -8.93726 -8.28291 -6.30492 0.43840 0.46329 1.31752 1.34905 1.44961 2.16125 2.32293 2.77575 2.80466 3.07744 3.49602 3.68244 3.76060 3.88290 3.92600 3.96673 4.04384 4.08432 4.13369 4.30194 4.36826 4.38571 4.40863 4.48294 4.49887 4.50191 4.67449 4.73607 4.79827 4.80540 4.84350 4.88224 4.94016 4.98632 4.99752 5.13433 5.19350 5.21312 5.31534 5.36943 5.38244 5.46110 5.65151 5.77317 5.79325 5.83988 6.02663 6.05257 6.47186 6.53733 6.68074 6.85444 7.34768 8.88114 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025859 B = 0.002095 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.523419 B =13358.812152 C =13669.560357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.114 4.114 3 C 0.189 3.811 4 H -0.005 1.005 5 C -0.508 4.508 6 H 0.039 0.961 7 C 0.016 3.984 8 N -0.947 5.947 9 Si 0.945 3.055 10 H -0.267 1.267 11 H -0.300 1.300 12 H -0.251 1.251 13 N -0.669 5.669 14 C 0.102 3.898 15 C -0.121 4.121 16 C -0.081 4.081 17 C -0.209 4.209 18 C 0.116 3.884 19 O -0.326 6.326 20 C 0.054 3.946 21 C 0.078 3.922 22 H 0.081 0.919 23 C -0.143 4.143 24 C -0.148 4.148 25 C 0.037 3.963 26 O -0.407 6.407 27 C -0.162 4.162 28 C -0.062 4.062 29 H 0.045 0.955 30 H 0.031 0.969 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.030 0.970 34 H 0.265 0.735 35 H 0.333 0.667 36 H 0.079 0.921 37 H 0.029 0.971 38 H 0.129 0.871 39 H 0.145 0.855 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.137 0.863 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.001 10.207 28.424 30.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.152 4.152 3 C 0.079 3.921 4 H 0.012 0.988 5 C -0.546 4.546 6 H 0.057 0.943 7 C -0.181 4.181 8 N -0.587 5.587 9 Si 0.773 3.227 10 H -0.193 1.193 11 H -0.228 1.228 12 H -0.175 1.175 13 N -0.300 5.300 14 C -0.026 4.026 15 C -0.122 4.122 16 C -0.100 4.100 17 C -0.227 4.227 18 C 0.071 3.929 19 O -0.240 6.240 20 C -0.020 4.020 21 C 0.020 3.980 22 H 0.099 0.901 23 C -0.180 4.180 24 C -0.186 4.186 25 C -0.039 4.039 26 O -0.327 6.327 27 C -0.181 4.181 28 C -0.081 4.081 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.151 0.849 36 H 0.097 0.903 37 H 0.047 0.953 38 H 0.147 0.853 39 H 0.163 0.837 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.128 0.872 43 H 0.105 0.895 44 H 0.120 0.880 45 H 0.107 0.893 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.155 0.845 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.294 9.523 28.465 30.043 hybrid contribution 1.126 0.306 -1.127 1.622 sum 2.420 9.829 27.338 29.151 Atomic orbital electron populations 1.21368 0.95086 0.99263 1.01741 1.21732 0.97834 0.97038 0.98623 1.19453 0.92254 0.92209 0.88146 0.98768 1.21251 1.30882 1.12055 0.90406 0.94301 1.25701 0.97099 0.99908 0.95401 1.70032 1.47595 1.42627 0.98459 0.85898 0.79387 0.80294 0.77122 1.19333 1.22803 1.17497 1.60556 1.49227 1.15936 1.04281 1.20887 0.93549 0.99376 0.88800 1.19802 0.99782 0.95447 0.97169 1.21031 0.98852 0.93355 0.96721 1.21336 1.01928 1.01900 0.97544 1.19146 0.94217 0.91758 0.87795 1.86077 1.66205 1.27373 1.44322 1.23216 0.99079 0.80737 0.99002 1.23154 0.81316 0.97258 0.96237 0.90110 1.23286 0.99918 0.92389 1.02415 1.23141 0.92570 1.01990 1.00858 1.23354 0.98129 0.84975 0.97489 1.88509 1.24987 1.40752 1.78497 1.20587 1.04067 0.92665 1.00774 1.20977 0.94593 1.00210 0.92292 0.93644 0.94934 0.91889 0.92101 0.95144 0.92623 0.84901 0.90260 0.95270 0.85299 0.83694 0.88500 0.91536 0.87194 0.89453 0.88048 0.89306 0.91017 0.90879 0.84489 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.83 9.52 71.98 0.69 -4.14 16 2 C -0.11 -4.83 5.29 30.60 0.16 -4.67 16 3 C 0.19 8.68 1.89 44.17 0.08 8.76 16 4 H -0.01 -0.24 6.77 -2.39 -0.02 -0.26 16 5 C -0.51 -28.42 7.87 25.60 0.20 -28.21 16 6 H 0.04 2.42 7.85 -2.91 -0.02 2.40 16 7 C 0.02 0.95 5.45 84.66 0.46 1.41 16 8 N -0.95 -59.00 13.96 21.45 0.30 -58.71 16 9 Si 0.95 45.18 24.38 68.60 1.67 46.85 16 10 H -0.27 -12.28 6.86 99.48 0.68 -11.59 16 11 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 12 H -0.25 -11.16 6.53 99.48 0.65 -10.51 16 13 N -0.67 -26.57 5.61 -499.45 -2.80 -29.38 16 14 C 0.10 3.31 5.66 85.56 0.48 3.79 16 15 C -0.12 -3.52 5.35 -19.85 -0.11 -3.63 16 16 C -0.08 -2.16 9.69 22.26 0.22 -1.95 16 17 C -0.21 -5.05 9.04 22.37 0.20 -4.85 16 18 C 0.12 3.03 6.69 22.51 0.15 3.19 16 19 O -0.33 -8.15 10.14 -91.80 -0.93 -9.08 16 20 C 0.05 0.95 4.45 71.98 0.32 1.27 16 21 C 0.08 1.20 3.72 31.26 0.12 1.31 16 22 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 23 C -0.14 -1.17 6.58 32.09 0.21 -0.96 16 24 C -0.15 -1.09 7.02 31.89 0.22 -0.86 16 25 C 0.04 0.49 7.80 72.45 0.56 1.05 16 26 O -0.41 -8.63 11.04 -148.28 -1.64 -10.27 16 27 C -0.16 -4.27 9.99 22.37 0.22 -4.05 16 28 C -0.06 -1.69 9.69 22.26 0.22 -1.47 16 29 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.03 1.54 7.09 -2.39 -0.02 1.52 16 31 H 0.06 2.46 7.73 -2.39 -0.02 2.44 16 32 H 0.06 2.22 7.62 -2.39 -0.02 2.20 16 33 H 0.03 1.35 3.26 -2.38 -0.01 1.34 16 34 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 35 H 0.33 13.94 8.13 -89.69 -0.73 13.21 16 36 H 0.08 2.42 7.56 -2.39 -0.02 2.40 16 37 H 0.03 0.94 7.89 -2.39 -0.02 0.92 16 38 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.15 2.71 6.30 -2.91 -0.02 2.70 16 40 H 0.10 1.21 7.66 -2.39 -0.02 1.19 16 41 H 0.07 1.19 7.66 -2.39 -0.02 1.18 16 42 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.09 0.67 8.06 -2.39 -0.02 0.65 16 44 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 46 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 49 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -69.22 384.38 1.14 -68.09 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.12 Total: 26.50 kcal Atomic # 6 Polarization: -38.42 SS G_CDS: 4.42 Total: -34.00 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -2.50 Total: -88.08 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -2.57 Total: -19.35 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.67 Total: 46.85 kcal Total: -69.22 1.14 -68.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184087697.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.944 kcal (2) G-P(sol) polarization free energy of solvation -69.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds