Wall clock time and date at job start Tue Mar 31 2020 12:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47024 * 2 1 4 4 H 1.08991 * 109.47377 * 304.28259 * 3 2 1 5 5 C 1.50705 * 109.47194 * 184.28279 * 3 2 1 6 6 H 1.08003 * 120.00104 * 245.40890 * 5 3 2 7 7 C 1.37876 * 119.99840 * 65.40428 * 5 3 2 8 8 N 1.31519 * 119.99973 * 193.87231 * 7 5 3 9 9 Si 1.86800 * 120.00071 * 13.87379 * 7 5 3 10 10 H 1.48495 * 109.47177 * 84.18769 * 9 7 5 11 11 H 1.48500 * 109.47178 * 204.18811 * 9 7 5 12 12 H 1.48503 * 109.46931 * 324.19179 * 9 7 5 13 13 N 1.46908 * 109.47310 * 64.28403 * 3 2 1 14 14 C 1.46892 * 111.00014 * 262.13084 * 13 3 2 15 15 C 1.50695 * 109.47456 * 175.28455 * 14 13 3 16 16 C 1.38265 * 119.94085 * 89.99905 * 15 14 13 17 17 C 1.38148 * 120.05659 * 180.28210 * 16 15 14 18 18 C 1.38733 * 119.94095 * 359.44520 * 17 16 15 19 19 O 1.35895 * 120.05464 * 180.29577 * 18 17 16 20 20 C 1.42903 * 117.00242 * 0.23843 * 19 18 17 21 21 C 1.52996 * 109.47129 * 179.97438 * 20 19 18 22 22 H 1.08993 * 110.27667 * 54.29941 * 21 20 19 23 23 C 1.54946 * 110.30893 * 176.38993 * 21 20 19 24 24 C 1.55412 * 100.89497 * 155.28640 * 23 21 20 25 25 C 1.54378 * 102.30820 * 325.99037 * 24 23 21 26 26 O 1.43236 * 107.59150 * 21.28571 * 25 24 23 27 27 C 1.38731 * 119.88774 * 0.53408 * 18 17 16 28 28 C 1.38142 * 119.94639 * 359.74145 * 27 18 17 29 29 H 1.08999 * 109.46617 * 57.40827 * 1 2 3 30 30 H 1.09004 * 109.47038 * 177.39731 * 1 2 3 31 31 H 1.08996 * 109.47225 * 297.40061 * 1 2 3 32 32 H 1.08992 * 109.47545 * 239.99516 * 2 1 3 33 33 H 1.09006 * 109.47109 * 119.99533 * 2 1 3 34 34 H 0.96993 * 119.99978 * 180.02562 * 8 7 5 35 35 H 1.00899 * 110.99565 * 26.08278 * 13 3 2 36 36 H 1.09005 * 109.47165 * 55.28755 * 14 13 3 37 37 H 1.09002 * 109.47118 * 295.29286 * 14 13 3 38 38 H 1.08007 * 119.97661 * 0.02562 * 16 15 14 39 39 H 1.07999 * 120.02780 * 179.70579 * 17 16 15 40 40 H 1.08996 * 109.46859 * 299.99662 * 20 19 18 41 41 H 1.08999 * 109.46997 * 59.99677 * 20 19 18 42 42 H 1.09005 * 111.12742 * 273.27857 * 23 21 20 43 43 H 1.09002 * 111.12651 * 37.43879 * 23 21 20 44 44 H 1.09006 * 110.88216 * 207.75013 * 24 23 21 45 45 H 1.09002 * 110.93470 * 84.25285 * 24 23 21 46 46 H 1.09000 * 109.82960 * 261.76607 * 25 24 23 47 47 H 1.09005 * 109.82719 * 140.79762 * 25 24 23 48 48 H 1.07996 * 120.02316 * 179.72284 * 27 18 17 49 49 H 1.07998 * 119.97783 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6154 1.9780 -0.8490 5 6 3.5433 1.4439 -0.1061 6 1 4.1422 1.8123 0.7137 7 6 4.1540 0.9747 -1.2497 8 7 5.4440 0.7183 -1.2484 9 14 3.1494 0.7033 -2.8010 10 1 3.0273 1.9843 -3.5421 11 1 3.8257 -0.3025 -3.6591 12 1 1.7965 0.2124 -2.4350 13 7 1.6366 2.1046 1.2479 14 6 0.4227 2.9076 1.0492 15 6 -0.0254 3.4761 2.3708 16 6 0.4435 4.7086 2.7865 17 6 0.0387 5.2295 4.0003 18 6 -0.8480 4.5200 4.7972 19 8 -1.2523 5.0329 5.9889 20 6 -0.7284 6.3106 6.3566 21 6 -1.2931 6.7207 7.7181 22 1 -1.1025 5.9418 8.4563 23 6 -0.6679 8.0618 8.1777 24 6 -1.7720 8.5870 9.1372 25 6 -3.0634 8.0726 8.4658 26 8 -2.7029 6.9770 7.6165 27 6 -1.3173 3.2837 4.3777 28 6 -0.9051 2.7647 3.1656 29 1 -0.3632 0.5536 -0.8659 30 1 -0.3633 -1.0266 -0.0467 31 1 -0.3633 0.4729 0.9123 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.8737 0.3886 -2.0530 35 1 1.5079 1.4318 1.9888 36 1 -0.3664 2.2778 0.6383 37 1 0.6352 3.7220 0.3565 38 1 1.1301 5.2629 2.1636 39 1 0.4090 6.1901 4.3267 40 1 0.3585 6.2542 6.4157 41 1 -1.0138 7.0494 5.6077 42 1 0.2698 7.8967 8.7084 43 1 -0.5264 8.7386 7.3350 44 1 -1.7640 9.6762 9.1795 45 1 -1.6567 8.1611 10.1339 46 1 -3.5138 8.8681 7.8722 47 1 -3.7665 7.7344 9.2271 48 1 -2.0042 2.7275 4.9983 49 1 -1.2699 1.8021 2.8387 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184087718.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:19 Heat of formation + Delta-G solvation = -59.691642 kcal Electronic energy + Delta-G solvation = -26117.892948 eV Core-core repulsion = 22431.073326 eV Total energy + Delta-G solvation = -3686.819622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.36758 -39.56528 -37.85162 -36.38215 -32.79815 -32.61549 -31.80008 -31.22888 -30.77588 -29.41698 -27.29137 -26.17579 -24.10190 -22.90101 -22.38360 -22.14287 -21.44345 -20.69584 -19.88027 -18.20014 -17.46798 -16.78282 -16.57968 -15.87476 -15.69488 -15.40514 -15.07035 -14.82217 -14.51198 -14.03931 -13.94590 -13.71813 -13.65250 -13.34089 -13.14170 -12.73601 -12.58335 -12.43847 -12.25031 -11.93174 -11.80807 -11.78002 -11.65713 -11.62284 -11.34746 -11.28539 -10.89393 -10.82809 -10.69962 -10.63216 -10.33336 -9.90683 -9.88431 -9.38800 -9.25136 -8.86144 -8.36814 -7.98820 -7.26662 -6.02129 -3.94655 1.47925 1.57787 2.98503 3.30319 3.33812 3.38501 3.40885 3.89354 3.94834 4.31447 4.38789 4.46212 4.64015 4.67659 4.77569 4.92438 4.96162 5.03871 5.06128 5.12152 5.18971 5.24498 5.27270 5.36010 5.39484 5.43148 5.52404 5.54990 5.62522 5.74991 5.79119 5.86645 5.94237 6.03138 6.15681 6.22028 6.40845 6.49336 6.52010 6.58076 6.59739 6.79493 6.86922 6.89004 6.93893 7.23138 7.44369 7.79217 7.97747 8.39150 8.76115 9.14355 9.63832 11.11428 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.029802 B = 0.002071 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.307332 B =13519.911629 C =14060.329988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.156 4.156 3 C 0.192 3.808 4 H 0.024 0.976 5 C -0.497 4.497 6 H 0.080 0.920 7 C 0.070 3.930 8 N -0.897 5.897 9 Si 0.859 3.141 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.253 1.253 13 N -0.665 5.665 14 C 0.092 3.908 15 C -0.105 4.105 16 C -0.058 4.058 17 C -0.210 4.210 18 C 0.120 3.880 19 O -0.310 6.310 20 C 0.062 3.938 21 C 0.083 3.917 22 H 0.082 0.918 23 C -0.149 4.149 24 C -0.155 4.155 25 C 0.047 3.953 26 O -0.371 6.371 27 C -0.152 4.152 28 C -0.078 4.078 29 H 0.045 0.955 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.262 0.738 35 H 0.329 0.671 36 H 0.035 0.965 37 H 0.072 0.928 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.126 0.874 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.373 13.894 18.381 28.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.195 4.195 3 C 0.083 3.917 4 H 0.042 0.958 5 C -0.535 4.535 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.535 5.535 9 Si 0.686 3.314 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.178 1.178 13 N -0.295 5.295 14 C -0.037 4.037 15 C -0.106 4.106 16 C -0.076 4.076 17 C -0.229 4.229 18 C 0.075 3.925 19 O -0.224 6.224 20 C -0.014 4.014 21 C 0.026 3.974 22 H 0.100 0.900 23 C -0.187 4.187 24 C -0.193 4.193 25 C -0.029 4.029 26 O -0.290 6.290 27 C -0.171 4.171 28 C -0.096 4.096 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.146 0.854 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.144 0.856 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.055 14.172 18.180 28.091 hybrid contribution -0.752 -0.564 -0.949 1.336 sum -16.807 13.608 17.230 27.650 Atomic orbital electron populations 1.21999 0.98599 1.00188 1.00535 1.22700 0.92745 1.01804 1.02243 1.19562 0.96601 0.88055 0.87468 0.95816 1.20984 0.88935 1.40802 1.02790 0.90222 1.24915 0.94731 0.94936 0.98590 1.69956 1.10241 1.44927 1.28419 0.87348 0.81689 0.78139 0.84212 1.20587 1.21649 1.17752 1.60733 1.30659 1.28995 1.09121 1.21073 0.92447 0.97672 0.92532 1.19935 0.97880 0.95102 0.97693 1.20884 0.96945 0.95017 0.94784 1.21186 1.02781 1.01610 0.97293 1.18950 0.94776 0.93580 0.85188 1.86073 1.67376 1.34435 1.34533 1.22922 0.98012 0.84449 0.95973 1.23002 0.81687 0.97010 0.95727 0.89969 1.23265 0.99388 0.95981 1.00072 1.23134 0.94303 1.02228 0.99598 1.23157 0.96762 0.89473 0.93543 1.88541 1.23019 1.51510 1.65962 1.20317 1.04211 0.94647 0.97900 1.20871 0.96511 0.99132 0.93099 0.93627 0.94009 0.93407 0.91714 0.92409 0.92832 0.85389 0.94717 0.90963 0.85476 0.85959 0.90597 0.91341 0.89169 0.89808 0.89705 0.90259 0.91209 0.91273 0.85617 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 8.66 37.16 0.32 -2.34 16 2 C -0.16 -3.27 4.62 -26.73 -0.12 -3.39 16 3 C 0.19 4.42 1.79 -68.86 -0.12 4.30 16 4 H 0.02 0.57 6.42 -51.93 -0.33 0.23 16 5 C -0.50 -13.95 9.28 -34.44 -0.32 -14.27 16 6 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 7 C 0.07 2.00 5.36 -17.82 -0.10 1.90 16 8 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 9 Si 0.86 21.05 25.87 -169.99 -4.40 16.65 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.25 -5.76 5.35 56.52 0.30 -5.46 16 13 N -0.67 -13.43 6.08 -109.22 -0.66 -14.09 16 14 C 0.09 1.55 5.14 -4.98 -0.03 1.53 16 15 C -0.11 -1.60 5.34 -104.60 -0.56 -2.16 16 16 C -0.06 -0.84 9.69 -39.60 -0.38 -1.22 16 17 C -0.21 -2.75 9.04 -39.43 -0.36 -3.11 16 18 C 0.12 1.64 6.69 -39.22 -0.26 1.38 16 19 O -0.31 -4.04 10.13 -20.14 -0.20 -4.24 16 20 C 0.06 0.59 4.45 37.16 0.17 0.76 16 21 C 0.08 0.70 3.72 -25.71 -0.10 0.60 16 22 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 23 C -0.15 -0.80 6.58 -24.42 -0.16 -0.96 16 24 C -0.16 -0.73 7.02 -24.73 -0.17 -0.90 16 25 C 0.05 0.32 7.80 37.88 0.30 0.61 16 26 O -0.37 -3.87 11.04 -35.96 -0.40 -4.27 16 27 C -0.15 -2.06 9.99 -39.43 -0.39 -2.45 16 28 C -0.08 -1.07 9.69 -39.61 -0.38 -1.46 16 29 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.74 6.20 -51.93 -0.32 0.42 16 32 H 0.06 1.46 4.72 -51.93 -0.25 1.21 16 33 H 0.06 1.21 8.04 -51.93 -0.42 0.79 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.33 6.35 8.05 -39.29 -0.32 6.03 16 36 H 0.03 0.56 5.49 -51.93 -0.29 0.28 16 37 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 38 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 39 H 0.12 1.31 6.30 -52.49 -0.33 0.98 16 40 H 0.08 0.61 7.65 -51.93 -0.40 0.21 16 41 H 0.07 0.63 7.67 -51.93 -0.40 0.23 16 42 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.41 8.06 -51.93 -0.42 -0.01 16 44 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 49 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 383.85 15.07 5.78 5.78 Total: -1.00 -32.22 383.85 -9.97 -42.19 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -8.19 Total: 5.86 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -2.67 Total: -21.18 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.11 Total: -40.79 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.60 Total: -8.51 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.40 Total: 16.65 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.22 -9.97 -42.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184087718.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.497 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds