Wall clock time and date at job start Tue Mar 31 2020 12:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47024 * 2 1 4 4 H 1.08991 * 109.47377 * 304.28259 * 3 2 1 5 5 C 1.50705 * 109.47194 * 184.28279 * 3 2 1 6 6 H 1.08003 * 120.00104 * 245.40890 * 5 3 2 7 7 C 1.37876 * 119.99840 * 65.40428 * 5 3 2 8 8 N 1.31519 * 119.99973 * 193.87231 * 7 5 3 9 9 Si 1.86800 * 120.00071 * 13.87379 * 7 5 3 10 10 H 1.48495 * 109.47177 * 84.18769 * 9 7 5 11 11 H 1.48500 * 109.47178 * 204.18811 * 9 7 5 12 12 H 1.48503 * 109.46931 * 324.19179 * 9 7 5 13 13 N 1.46908 * 109.47310 * 64.28403 * 3 2 1 14 14 C 1.46892 * 111.00014 * 262.13084 * 13 3 2 15 15 C 1.50695 * 109.47456 * 175.28455 * 14 13 3 16 16 C 1.38265 * 119.94085 * 89.99905 * 15 14 13 17 17 C 1.38148 * 120.05659 * 180.28210 * 16 15 14 18 18 C 1.38733 * 119.94095 * 359.44520 * 17 16 15 19 19 O 1.35895 * 120.05464 * 180.29577 * 18 17 16 20 20 C 1.42903 * 117.00242 * 0.23843 * 19 18 17 21 21 C 1.52996 * 109.47129 * 179.97438 * 20 19 18 22 22 H 1.08993 * 110.27667 * 54.29941 * 21 20 19 23 23 C 1.54946 * 110.30893 * 176.38993 * 21 20 19 24 24 C 1.55412 * 100.89497 * 155.28640 * 23 21 20 25 25 C 1.54378 * 102.30820 * 325.99037 * 24 23 21 26 26 O 1.43236 * 107.59150 * 21.28571 * 25 24 23 27 27 C 1.38731 * 119.88774 * 0.53408 * 18 17 16 28 28 C 1.38142 * 119.94639 * 359.74145 * 27 18 17 29 29 H 1.08999 * 109.46617 * 57.40827 * 1 2 3 30 30 H 1.09004 * 109.47038 * 177.39731 * 1 2 3 31 31 H 1.08996 * 109.47225 * 297.40061 * 1 2 3 32 32 H 1.08992 * 109.47545 * 239.99516 * 2 1 3 33 33 H 1.09006 * 109.47109 * 119.99533 * 2 1 3 34 34 H 0.96993 * 119.99978 * 180.02562 * 8 7 5 35 35 H 1.00899 * 110.99565 * 26.08278 * 13 3 2 36 36 H 1.09005 * 109.47165 * 55.28755 * 14 13 3 37 37 H 1.09002 * 109.47118 * 295.29286 * 14 13 3 38 38 H 1.08007 * 119.97661 * 0.02562 * 16 15 14 39 39 H 1.07999 * 120.02780 * 179.70579 * 17 16 15 40 40 H 1.08996 * 109.46859 * 299.99662 * 20 19 18 41 41 H 1.08999 * 109.46997 * 59.99677 * 20 19 18 42 42 H 1.09005 * 111.12742 * 273.27857 * 23 21 20 43 43 H 1.09002 * 111.12651 * 37.43879 * 23 21 20 44 44 H 1.09006 * 110.88216 * 207.75013 * 24 23 21 45 45 H 1.09002 * 110.93470 * 84.25285 * 24 23 21 46 46 H 1.09000 * 109.82960 * 261.76607 * 25 24 23 47 47 H 1.09005 * 109.82719 * 140.79762 * 25 24 23 48 48 H 1.07996 * 120.02316 * 179.72284 * 27 18 17 49 49 H 1.07998 * 119.97783 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6154 1.9780 -0.8490 5 6 3.5433 1.4439 -0.1061 6 1 4.1422 1.8123 0.7137 7 6 4.1540 0.9747 -1.2497 8 7 5.4440 0.7183 -1.2484 9 14 3.1494 0.7033 -2.8010 10 1 3.0273 1.9843 -3.5421 11 1 3.8257 -0.3025 -3.6591 12 1 1.7965 0.2124 -2.4350 13 7 1.6366 2.1046 1.2479 14 6 0.4227 2.9076 1.0492 15 6 -0.0254 3.4761 2.3708 16 6 0.4435 4.7086 2.7865 17 6 0.0387 5.2295 4.0003 18 6 -0.8480 4.5200 4.7972 19 8 -1.2523 5.0329 5.9889 20 6 -0.7284 6.3106 6.3566 21 6 -1.2931 6.7207 7.7181 22 1 -1.1025 5.9418 8.4563 23 6 -0.6679 8.0618 8.1777 24 6 -1.7720 8.5870 9.1372 25 6 -3.0634 8.0726 8.4658 26 8 -2.7029 6.9770 7.6165 27 6 -1.3173 3.2837 4.3777 28 6 -0.9051 2.7647 3.1656 29 1 -0.3632 0.5536 -0.8659 30 1 -0.3633 -1.0266 -0.0467 31 1 -0.3633 0.4729 0.9123 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.8737 0.3886 -2.0530 35 1 1.5079 1.4318 1.9888 36 1 -0.3664 2.2778 0.6383 37 1 0.6352 3.7220 0.3565 38 1 1.1301 5.2629 2.1636 39 1 0.4090 6.1901 4.3267 40 1 0.3585 6.2542 6.4157 41 1 -1.0138 7.0494 5.6077 42 1 0.2698 7.8967 8.7084 43 1 -0.5264 8.7386 7.3350 44 1 -1.7640 9.6762 9.1795 45 1 -1.6567 8.1611 10.1339 46 1 -3.5138 8.8681 7.8722 47 1 -3.7665 7.7344 9.2271 48 1 -2.0042 2.7275 4.9983 49 1 -1.2699 1.8021 2.8387 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184087718.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:18 Heat of formation + Delta-G solvation = -80.645990 kcal Electronic energy + Delta-G solvation = -26118.801597 eV Core-core repulsion = 22431.073326 eV Total energy + Delta-G solvation = -3687.728271 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.25236 -40.30115 -39.04734 -37.82223 -34.56814 -33.39777 -33.14759 -32.17809 -31.71916 -30.71044 -28.96788 -26.93123 -25.55159 -23.99658 -23.80875 -22.66240 -22.22977 -21.81755 -21.57001 -19.16153 -18.82322 -18.07677 -17.36691 -16.88486 -16.78077 -16.56223 -16.40293 -15.91848 -15.66368 -15.51419 -14.97256 -14.83151 -14.69651 -14.48237 -14.30838 -14.20022 -13.67790 -13.43267 -13.41643 -13.23300 -13.00902 -12.77014 -12.70624 -12.58973 -12.35575 -12.30531 -12.28475 -12.01561 -11.82023 -11.76843 -11.67176 -11.61693 -11.26965 -11.17243 -10.52730 -10.52282 -9.91472 -9.11850 -8.82098 -8.23780 -6.21160 0.42876 0.47767 1.36391 1.39225 1.47531 2.16037 2.38775 2.77219 2.80689 3.09313 3.49726 3.73994 3.74869 3.88947 3.92710 3.98355 4.05894 4.06751 4.13878 4.30085 4.31977 4.37808 4.39920 4.43158 4.48565 4.48948 4.52627 4.65647 4.78396 4.79843 4.82308 4.87219 4.89800 4.94407 4.99769 5.12343 5.14331 5.20738 5.21315 5.26646 5.34255 5.42232 5.55492 5.74724 5.79217 5.83425 6.04236 6.09765 6.47296 6.75692 6.83490 6.84648 7.42081 8.93640 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.029802 B = 0.002071 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.307332 B =13519.911629 C =14060.329988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.153 4.153 3 C 0.198 3.802 4 H 0.024 0.976 5 C -0.503 4.503 6 H 0.029 0.971 7 C 0.010 3.990 8 N -0.949 5.949 9 Si 0.926 3.074 10 H -0.277 1.277 11 H -0.292 1.292 12 H -0.221 1.221 13 N -0.679 5.679 14 C 0.098 3.902 15 C -0.122 4.122 16 C -0.070 4.070 17 C -0.210 4.210 18 C 0.116 3.884 19 O -0.325 6.325 20 C 0.055 3.945 21 C 0.078 3.922 22 H 0.079 0.921 23 C -0.144 4.144 24 C -0.149 4.149 25 C 0.037 3.963 26 O -0.405 6.405 27 C -0.160 4.160 28 C -0.075 4.075 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.263 0.737 35 H 0.334 0.666 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.126 0.874 39 H 0.144 0.856 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.139 0.861 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.815 14.456 18.893 30.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.192 4.192 3 C 0.088 3.912 4 H 0.042 0.958 5 C -0.542 4.542 6 H 0.048 0.952 7 C -0.187 4.187 8 N -0.590 5.590 9 Si 0.751 3.249 10 H -0.203 1.203 11 H -0.218 1.218 12 H -0.144 1.144 13 N -0.309 5.309 14 C -0.030 4.030 15 C -0.122 4.122 16 C -0.089 4.089 17 C -0.228 4.228 18 C 0.070 3.930 19 O -0.239 6.239 20 C -0.020 4.020 21 C 0.021 3.979 22 H 0.096 0.904 23 C -0.181 4.181 24 C -0.186 4.186 25 C -0.039 4.039 26 O -0.325 6.325 27 C -0.179 4.179 28 C -0.093 4.093 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.151 0.849 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.143 0.857 39 H 0.161 0.839 40 H 0.110 0.890 41 H 0.089 0.911 42 H 0.125 0.875 43 H 0.107 0.893 44 H 0.120 0.880 45 H 0.105 0.895 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.157 0.843 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.529 14.751 18.721 30.189 hybrid contribution 0.035 -0.645 -0.928 1.130 sum -18.495 14.106 17.793 29.286 Atomic orbital electron populations 1.21913 0.94974 1.01992 1.01649 1.22536 0.95919 0.99512 1.01257 1.19337 0.93172 0.89883 0.88762 0.95801 1.21293 0.91748 1.39828 1.01302 0.95243 1.25793 0.95800 0.94824 1.02236 1.70117 1.12514 1.46874 1.29455 0.86250 0.81441 0.78064 0.79195 1.20292 1.21793 1.14385 1.60529 1.33245 1.29105 1.08053 1.21006 0.91328 0.97028 0.93634 1.19839 0.99214 0.95764 0.97432 1.20997 0.97224 0.95182 0.95460 1.21364 1.02420 1.02417 0.96620 1.19145 0.94550 0.93759 0.85499 1.86070 1.67763 1.35983 1.34100 1.23202 0.99018 0.83055 0.96732 1.23121 0.81346 0.98528 0.94891 0.90362 1.23287 1.00062 0.94236 1.00523 1.23142 0.92673 1.03271 0.99514 1.23355 0.98035 0.88893 0.93575 1.88498 1.24210 1.52857 1.66975 1.20555 1.04409 0.94888 0.98028 1.21014 0.95873 0.99575 0.92861 0.93127 0.91842 0.91772 0.93243 0.93005 0.92842 0.84862 0.93149 0.91835 0.85650 0.83851 0.89020 0.91116 0.87518 0.89289 0.87959 0.89484 0.90741 0.90878 0.84301 0.84065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.51 8.66 71.98 0.62 -3.89 16 2 C -0.15 -6.15 4.62 30.59 0.14 -6.01 16 3 C 0.20 9.00 1.79 44.17 0.08 9.08 16 4 H 0.02 1.10 6.42 -2.39 -0.02 1.08 16 5 C -0.50 -29.09 9.28 25.60 0.24 -28.85 16 6 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 7 C 0.01 0.59 5.36 84.65 0.45 1.05 16 8 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 9 Si 0.93 43.51 25.87 68.60 1.77 45.28 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 12 H -0.22 -9.18 5.35 99.48 0.53 -8.65 16 13 N -0.68 -27.11 6.08 -499.47 -3.04 -30.15 16 14 C 0.10 3.20 5.14 85.56 0.44 3.64 16 15 C -0.12 -3.55 5.34 -19.85 -0.11 -3.66 16 16 C -0.07 -1.98 9.69 22.25 0.22 -1.76 16 17 C -0.21 -5.25 9.04 22.37 0.20 -5.04 16 18 C 0.12 3.02 6.69 22.51 0.15 3.17 16 19 O -0.32 -8.12 10.13 -91.68 -0.93 -9.05 16 20 C 0.05 0.97 4.45 71.98 0.32 1.29 16 21 C 0.08 1.22 3.72 31.26 0.12 1.34 16 22 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 23 C -0.14 -1.22 6.58 32.09 0.21 -1.01 16 24 C -0.15 -1.07 7.02 31.89 0.22 -0.84 16 25 C 0.04 0.46 7.80 72.45 0.56 1.03 16 26 O -0.41 -8.20 11.04 -148.29 -1.64 -9.83 16 27 C -0.16 -4.08 9.99 22.36 0.22 -3.86 16 28 C -0.07 -1.93 9.69 22.25 0.22 -1.71 16 29 H 0.05 1.50 8.12 -2.39 -0.02 1.48 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.74 6.20 -2.39 -0.01 1.72 16 32 H 0.05 2.12 4.72 -2.39 -0.01 2.11 16 33 H 0.05 2.11 8.04 -2.38 -0.02 2.09 16 34 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 35 H 0.33 12.65 8.05 -89.69 -0.72 11.93 16 36 H 0.05 1.48 5.49 -2.38 -0.01 1.47 16 37 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 38 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.14 2.84 6.30 -2.91 -0.02 2.82 16 40 H 0.09 1.31 7.65 -2.39 -0.02 1.29 16 41 H 0.07 1.21 7.67 -2.39 -0.02 1.19 16 42 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 43 H 0.09 0.67 8.06 -2.39 -0.02 0.66 16 44 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 45 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 47 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 48 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 49 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -72.03 383.85 0.82 -71.21 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.04 Total: 28.45 kcal Atomic # 6 Polarization: -40.35 SS G_CDS: 4.31 Total: -36.04 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -2.74 Total: -90.02 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -2.57 Total: -18.88 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.77 Total: 45.28 kcal Total: -72.03 0.82 -71.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184087718.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.435 kcal (2) G-P(sol) polarization free energy of solvation -72.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds