Wall clock time and date at job start Tue Mar 31 2020 12:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47686 * 2 1 4 4 H 1.08998 * 109.46602 * 65.61944 * 3 2 1 5 5 C 1.52995 * 109.47455 * 185.62078 * 3 2 1 6 6 N 1.46499 * 109.46759 * 305.62718 * 3 2 1 7 7 C 1.34777 * 120.00227 * 117.77179 * 6 3 2 8 8 O 1.21597 * 119.99963 * 353.33097 * 7 6 3 9 9 C 1.47534 * 120.00163 * 173.32807 * 7 6 3 10 10 C 1.39667 * 120.19527 * 72.99809 * 9 7 6 11 11 C 1.37822 * 119.91944 * 179.97438 * 10 9 7 12 12 C 1.38577 * 120.32528 * 0.02648 * 11 10 9 13 13 C 1.38020 * 120.39934 * 0.02562 * 12 11 10 14 14 C 1.38842 * 120.07417 * 359.96376 * 13 12 11 15 15 O 1.35518 * 120.15978 * 180.02562 * 14 13 12 16 16 C 1.34810 * 117.00130 * 354.31233 * 15 14 13 17 17 H 1.07998 * 120.00273 * 4.69970 * 16 15 14 18 18 C 1.38699 * 119.99777 * 184.69108 * 16 15 14 19 19 N 1.31524 * 119.99575 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00049 * 0.02562 * 18 16 15 21 21 H 1.48492 * 109.47352 * 89.99835 * 20 18 16 22 22 H 1.48503 * 109.46865 * 209.99987 * 20 18 16 23 23 H 1.48500 * 109.47105 * 329.99534 * 20 18 16 24 24 C 1.46501 * 119.99832 * 297.76224 * 6 3 2 25 25 H 1.08997 * 109.47604 * 328.61046 * 24 6 3 26 26 C 1.53005 * 109.46718 * 88.60854 * 24 6 3 27 27 C 1.53003 * 109.47296 * 208.60459 * 24 6 3 28 28 C 1.52997 * 109.47080 * 146.04543 * 27 24 6 29 29 H 1.08999 * 109.47343 * 173.17030 * 1 2 3 30 30 H 1.09003 * 109.47042 * 293.17596 * 1 2 3 31 31 H 1.09002 * 109.46666 * 53.16965 * 1 2 3 32 32 H 1.09003 * 109.46916 * 239.99858 * 2 1 3 33 33 H 1.09002 * 109.47096 * 120.00248 * 2 1 3 34 34 H 1.08996 * 109.47171 * 303.92466 * 5 3 2 35 35 H 1.09007 * 109.46811 * 63.91924 * 5 3 2 36 36 H 1.08998 * 109.47306 * 183.92142 * 5 3 2 37 37 H 1.08006 * 120.03912 * 0.02562 * 10 9 7 38 38 H 1.08004 * 119.83790 * 180.29725 * 11 10 9 39 39 H 1.07997 * 119.79575 * 179.97438 * 12 11 10 40 40 H 1.08002 * 119.96470 * 179.97438 * 13 12 11 41 41 H 0.97001 * 119.99825 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.46625 * 271.35830 * 26 24 6 43 43 H 1.09002 * 109.47258 * 31.35999 * 26 24 6 44 44 H 1.08999 * 109.46869 * 151.35979 * 26 24 6 45 45 H 1.08997 * 109.47092 * 266.04755 * 27 24 6 46 46 H 1.09004 * 109.46908 * 26.04697 * 27 24 6 47 47 H 1.09003 * 109.46947 * 63.84491 * 28 27 24 48 48 H 1.08994 * 109.47056 * 183.84116 * 28 27 24 49 49 H 1.09002 * 109.47358 * 303.84345 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.7613 1.9263 0.9360 5 6 3.5636 1.4447 -0.1413 6 7 1.4444 2.1710 -1.1227 7 6 0.6495 3.2343 -0.8903 8 8 0.3283 3.5160 0.2482 9 6 0.1690 4.0564 -2.0171 10 6 -0.8171 3.5646 -2.8752 11 6 -1.2622 4.3377 -3.9258 12 6 -0.7357 5.6021 -4.1362 13 6 0.2400 6.1010 -3.2971 14 6 0.7003 5.3364 -2.2335 15 8 1.6579 5.8247 -1.4081 16 6 2.2069 7.0099 -1.7414 17 1 1.8274 7.5618 -2.5886 18 6 3.2592 7.5208 -0.9960 19 7 3.7945 8.6774 -1.3209 20 14 3.9160 6.5661 0.4691 21 1 5.0010 5.6567 0.0212 22 1 4.4505 7.5149 1.4787 23 1 2.8184 5.7680 1.0722 24 6 1.7129 1.7439 -2.4981 25 1 2.7109 1.3094 -2.5554 26 6 0.6770 0.6996 -2.9192 27 6 1.6282 2.9521 -3.4331 28 6 2.6418 2.7909 -4.5678 29 1 -0.3634 -1.0203 -0.1222 30 1 -0.3633 0.4045 0.9448 31 1 -0.3633 0.6161 -0.8226 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.0032 0.8442 0.6550 35 1 3.8394 1.0238 -1.1082 36 1 3.9334 2.4676 -0.0714 37 1 -1.2309 2.5798 -2.7153 38 1 -2.0282 3.9579 -4.5857 39 1 -1.0904 6.2005 -4.9624 40 1 0.6457 7.0872 -3.4678 41 1 4.5306 9.0346 -0.7998 42 1 1.0314 -0.2943 -2.6459 43 1 -0.2676 0.9004 -2.4137 44 1 0.5294 0.7488 -3.9981 45 1 0.6234 3.0190 -3.8501 46 1 1.8506 3.8608 -2.8736 47 1 2.3792 1.9201 -5.1685 48 1 2.6296 3.6821 -5.1951 49 1 3.6386 2.6556 -4.1481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184937084.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:16 Heat of formation + Delta-G solvation = -8.659057 kcal Electronic energy + Delta-G solvation = -29904.473671 eV Core-core repulsion = 26219.866987 eV Total energy + Delta-G solvation = -3684.606683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.99721 -38.86707 -36.92372 -36.66969 -34.70465 -32.49883 -31.58299 -30.69408 -30.20145 -29.44559 -28.58466 -25.41562 -24.17077 -23.82092 -23.17680 -21.68784 -21.25709 -20.66457 -18.64224 -17.97273 -17.43323 -16.50993 -16.12886 -15.49979 -14.86369 -14.55392 -14.34479 -14.20968 -14.07346 -13.86934 -13.82119 -13.57313 -13.40600 -13.07166 -12.94988 -12.58623 -12.42029 -12.31228 -12.23864 -12.10771 -11.91875 -11.76905 -11.54169 -11.26509 -11.08177 -10.98017 -10.93974 -10.84523 -10.63957 -10.50564 -10.38418 -10.22272 -10.11711 -9.63072 -9.16808 -8.91273 -8.33169 -7.99314 -7.35021 -6.50532 -4.16631 1.77091 2.13407 3.12549 3.19533 3.22876 3.34812 3.45895 4.21180 4.31437 4.63997 4.67438 4.93787 5.00449 5.05427 5.07513 5.16464 5.26280 5.32042 5.42653 5.52025 5.55115 5.57484 5.65207 5.66149 5.70889 5.74930 5.84598 5.85326 5.91403 5.97130 6.02564 6.05554 6.07286 6.15826 6.27987 6.32100 6.36153 6.40293 6.46606 6.51862 6.58737 6.71021 6.86768 6.95681 7.05445 7.16772 7.45680 7.65563 7.79438 7.92079 8.68871 8.84272 9.43825 10.55886 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.006858 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.531735 B = 4081.926372 C = 5317.976424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.129 4.129 3 C 0.133 3.867 4 H 0.099 0.901 5 C -0.164 4.164 6 N -0.602 5.602 7 C 0.583 3.417 8 O -0.533 6.533 9 C -0.191 4.191 10 C -0.048 4.048 11 C -0.213 4.213 12 C -0.060 4.060 13 C -0.222 4.222 14 C 0.187 3.813 15 O -0.200 6.200 16 C -0.391 4.391 17 H 0.110 0.890 18 C 0.071 3.929 19 N -0.871 5.871 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.280 1.280 23 H -0.251 1.251 24 C 0.142 3.858 25 H 0.081 0.919 26 C -0.169 4.169 27 C -0.170 4.170 28 C -0.148 4.148 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.137 0.863 41 H 0.281 0.719 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.047 0.953 48 H 0.057 0.943 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.746 -16.480 -4.609 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.167 4.167 3 C 0.030 3.970 4 H 0.117 0.883 5 C -0.221 4.221 6 N -0.335 5.335 7 C 0.372 3.628 8 O -0.409 6.409 9 C -0.196 4.196 10 C -0.067 4.067 11 C -0.232 4.232 12 C -0.078 4.078 13 C -0.242 4.242 14 C 0.132 3.868 15 O -0.103 6.103 16 C -0.466 4.466 17 H 0.127 0.873 18 C -0.134 4.134 19 N -0.508 5.508 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.206 1.206 23 H -0.175 1.175 24 C 0.039 3.961 25 H 0.099 0.901 26 C -0.226 4.226 27 C -0.206 4.206 28 C -0.206 4.206 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.155 0.845 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.066 0.934 48 H 0.076 0.924 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.615 -16.219 -3.698 17.023 hybrid contribution 0.529 -0.161 0.443 0.709 sum -3.086 -16.380 -3.255 16.983 Atomic orbital electron populations 1.21944 0.95576 1.01015 1.02905 1.21905 0.96719 0.96151 1.01943 1.21052 0.92475 0.92099 0.91355 0.88338 1.22158 0.95239 1.02805 1.01945 1.48089 1.48909 1.30219 1.06308 1.18199 0.77008 0.79050 0.88556 1.90731 1.56925 1.69782 1.23490 1.18588 1.05211 0.94482 1.01293 1.20465 0.94562 0.98543 0.93092 1.20503 1.05166 0.96336 1.01194 1.20884 0.94625 0.94893 0.97413 1.21185 1.02463 1.02261 0.98247 1.18787 0.88791 0.90257 0.88965 1.83578 1.45792 1.36747 1.44230 1.20795 1.15629 0.93695 1.16482 0.87277 1.24423 0.95045 0.95579 0.98309 1.69621 1.24094 1.17248 1.39793 0.86338 0.80174 0.80031 0.81715 1.19794 1.20568 1.17461 1.21125 0.98760 0.95361 0.80863 0.90092 1.22651 0.99767 0.98663 1.01560 1.23559 1.01674 0.98827 0.96589 1.21839 0.98900 1.01230 0.98601 0.93312 0.92856 0.91500 0.91755 0.91427 0.91665 0.92264 0.91969 0.86576 0.86947 0.86932 0.84516 0.90871 0.92562 0.91545 0.91711 0.88392 0.88446 0.93429 0.92426 0.93326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.32 37.16 0.35 -1.52 16 2 C -0.13 -1.46 4.91 -26.73 -0.13 -1.59 16 3 C 0.13 1.96 2.75 -67.93 -0.19 1.77 16 4 H 0.10 1.70 6.93 -51.93 -0.36 1.34 16 5 C -0.16 -2.17 9.21 37.15 0.34 -1.83 16 6 N -0.60 -9.80 1.46 -159.80 -0.23 -10.04 16 7 C 0.58 11.89 6.19 -12.47 -0.08 11.81 16 8 O -0.53 -12.87 16.46 5.28 0.09 -12.78 16 9 C -0.19 -3.79 2.89 -104.81 -0.30 -4.09 16 10 C -0.05 -0.78 6.34 -39.20 -0.25 -1.02 16 11 C -0.21 -3.22 9.41 -39.61 -0.37 -3.59 16 12 C -0.06 -0.99 10.03 -39.54 -0.40 -1.38 16 13 C -0.22 -4.53 9.16 -39.44 -0.36 -4.89 16 14 C 0.19 4.21 4.64 -38.60 -0.18 4.03 16 15 O -0.20 -5.29 7.99 0.81 0.01 -5.28 16 16 C -0.39 -10.83 9.95 30.90 0.31 -10.52 16 17 H 0.11 3.04 5.44 -52.49 -0.29 2.75 16 18 C 0.07 1.99 5.49 -17.51 -0.10 1.90 16 19 N -0.87 -24.82 13.96 55.48 0.77 -24.04 16 20 Si 0.89 22.20 28.62 -169.99 -4.86 17.33 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.25 -6.63 7.11 56.52 0.40 -6.22 16 24 C 0.14 1.93 2.28 -67.93 -0.15 1.78 16 25 H 0.08 1.02 5.81 -51.93 -0.30 0.72 16 26 C -0.17 -1.82 7.25 37.16 0.27 -1.55 16 27 C -0.17 -2.61 3.45 -26.73 -0.09 -2.70 16 28 C -0.15 -1.99 9.75 37.16 0.36 -1.63 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.86 4.05 -51.93 -0.21 0.65 16 32 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.12 1.61 6.36 -52.48 -0.33 1.28 16 38 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.14 2.93 5.64 -52.49 -0.30 2.63 16 41 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.06 0.53 6.66 -51.93 -0.35 0.18 16 43 H 0.07 0.76 4.30 -51.93 -0.22 0.54 16 44 H 0.06 0.63 7.81 -51.93 -0.41 0.22 16 45 H 0.10 1.46 3.53 -51.93 -0.18 1.27 16 46 H 0.10 1.90 3.92 -51.93 -0.20 1.70 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.05 0.65 8.03 -51.93 -0.42 0.23 16 LS Contribution 365.59 15.07 5.51 5.51 Total: -1.00 -30.86 365.59 -6.87 -37.72 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.17 Total: 6.61 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -0.97 Total: -15.03 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.54 Total: -34.08 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.09 Total: -18.06 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.86 Total: 17.33 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.86 -6.87 -37.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184937084.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.065 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds