Wall clock time and date at job start Tue Mar 31 2020 12:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46746 * 2 1 4 4 H 1.09007 * 109.47172 * 52.00590 * 3 2 1 5 5 C 1.52995 * 109.47010 * 172.00232 * 3 2 1 6 6 N 1.46499 * 109.47491 * 292.00341 * 3 2 1 7 7 C 1.34773 * 119.99806 * 135.44258 * 6 3 2 8 8 O 1.21593 * 119.99753 * 175.66687 * 7 6 3 9 9 C 1.47540 * 120.00508 * 355.66652 * 7 6 3 10 10 C 1.39667 * 120.19253 * 52.20479 * 9 7 6 11 11 C 1.37830 * 119.91819 * 180.02562 * 10 9 7 12 12 C 1.38574 * 120.32210 * 0.02694 * 11 10 9 13 13 C 1.38027 * 120.40301 * 359.69168 * 12 11 10 14 14 C 1.38840 * 120.07047 * 0.56526 * 13 12 11 15 15 O 1.35512 * 120.16225 * 179.74574 * 14 13 12 16 16 C 1.34815 * 117.00399 * 5.63609 * 15 14 13 17 17 H 1.08004 * 119.99591 * 354.91487 * 16 15 14 18 18 C 1.38695 * 120.00594 * 174.91649 * 16 15 14 19 19 N 1.31519 * 119.99732 * 0.27317 * 18 16 15 20 20 Si 1.86799 * 120.00248 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47227 * 59.99859 * 20 18 16 22 22 H 1.48497 * 109.47035 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46923 * 299.99549 * 20 18 16 24 24 C 1.46491 * 119.99962 * 315.44419 * 6 3 2 25 25 H 1.09004 * 109.47495 * 195.77546 * 24 6 3 26 26 C 1.52999 * 109.47284 * 75.77476 * 24 6 3 27 27 C 1.53000 * 109.47299 * 315.77416 * 24 6 3 28 28 C 1.53002 * 109.47281 * 292.25111 * 27 24 6 29 29 H 1.08997 * 109.47561 * 299.99442 * 1 2 3 30 30 H 1.08996 * 109.47100 * 59.99889 * 1 2 3 31 31 H 1.09007 * 109.46946 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46880 * 240.00612 * 2 1 3 33 33 H 1.08996 * 109.47100 * 120.00111 * 2 1 3 34 34 H 1.08996 * 109.47521 * 172.32545 * 5 3 2 35 35 H 1.09004 * 109.47219 * 292.32727 * 5 3 2 36 36 H 1.09003 * 109.47170 * 52.32202 * 5 3 2 37 37 H 1.07994 * 120.04247 * 0.04539 * 10 9 7 38 38 H 1.07992 * 119.84130 * 179.97438 * 11 10 9 39 39 H 1.08003 * 119.80215 * 179.97438 * 12 11 10 40 40 H 1.08001 * 119.97011 * 180.30272 * 13 12 11 41 41 H 0.97000 * 119.99998 * 359.72835 * 19 18 16 42 42 H 1.09003 * 109.47138 * 293.02029 * 26 24 6 43 43 H 1.08998 * 109.47196 * 53.01755 * 26 24 6 44 44 H 1.09002 * 109.47665 * 173.01958 * 26 24 6 45 45 H 1.09004 * 109.46970 * 52.24896 * 27 24 6 46 46 H 1.08995 * 109.47436 * 172.25060 * 27 24 6 47 47 H 1.08995 * 109.46927 * 59.99638 * 28 27 24 48 48 H 1.08993 * 109.47201 * 179.97438 * 28 27 24 49 49 H 1.09004 * 109.46943 * 299.99801 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5646 1.9959 0.8099 5 6 3.5567 1.4473 0.2007 6 7 1.7148 2.0755 -1.2806 7 6 1.2087 3.3243 -1.3057 8 8 1.0126 3.8795 -2.3695 9 6 0.8924 4.0178 -0.0424 10 6 1.8548 4.1157 0.9651 11 6 1.5531 4.7643 2.1432 12 6 0.2982 5.3202 2.3343 13 6 -0.6609 5.2363 1.3453 14 6 -0.3766 4.5820 0.1542 15 8 -1.3186 4.4940 -0.8160 16 6 -2.4717 5.1620 -0.6120 17 1 -2.6448 5.6660 0.3274 18 6 -3.4357 5.2021 -1.6084 19 7 -3.2271 4.5839 -2.7503 20 14 -5.0331 6.1283 -1.3259 21 1 -4.7353 7.5581 -1.0570 22 1 -5.8889 6.0192 -2.5345 23 1 -5.7451 5.5434 -0.1613 24 6 1.9399 1.3510 -2.5337 25 1 1.9133 2.0516 -3.3684 26 6 0.8458 0.2974 -2.7173 27 6 3.3064 0.6644 -2.4877 28 6 4.4101 1.7239 -2.4988 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.9380 2.4593 0.0652 35 1 3.7910 1.1025 1.2079 36 1 4.0217 0.7832 -0.5280 37 1 2.8342 3.6840 0.8211 38 1 2.2980 4.8390 2.9215 39 1 0.0707 5.8263 3.2609 40 1 -1.6351 5.6763 1.4997 41 1 -2.3975 4.1032 -2.8972 42 1 0.9503 -0.4721 -1.9523 43 1 -0.1324 0.7696 -2.6262 44 1 0.9398 -0.1562 -3.7040 45 1 3.3834 0.0691 -1.5778 46 1 3.4167 0.0158 -3.3566 47 1 4.2999 2.3725 -1.6298 48 1 5.3836 1.2349 -2.4655 49 1 4.3331 2.3193 -3.4086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184937120.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:22 Heat of formation + Delta-G solvation = -14.873620 kcal Electronic energy + Delta-G solvation = -29431.713363 eV Core-core repulsion = 25746.837196 eV Total energy + Delta-G solvation = -3684.876167 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.61911 -38.97325 -37.06261 -36.52448 -33.87452 -32.32381 -32.16730 -31.65122 -30.15305 -29.01334 -28.08521 -25.00626 -24.36776 -23.48421 -23.02045 -21.72445 -21.15538 -20.62620 -19.29998 -18.42513 -17.48316 -16.38644 -15.68269 -15.20835 -14.91814 -14.48973 -14.34426 -14.25411 -14.08559 -13.81067 -13.72047 -13.63902 -13.38589 -13.29746 -13.17609 -12.94339 -12.56270 -12.22938 -11.95354 -11.50319 -11.48745 -11.41045 -11.32225 -11.14429 -11.05469 -10.94974 -10.86604 -10.79751 -10.63519 -10.56669 -10.46217 -10.30154 -9.78783 -9.56896 -9.03640 -8.81022 -8.25817 -8.23448 -7.39843 -6.79305 -4.08231 1.76254 2.23133 3.22451 3.28129 3.30996 3.44508 3.49789 4.08593 4.45068 4.72093 4.82863 4.94198 5.04660 5.07234 5.12625 5.16729 5.20614 5.31672 5.39781 5.45315 5.52186 5.59148 5.63502 5.65865 5.67950 5.74529 5.86169 5.87227 5.92801 5.94216 5.96550 6.02905 6.06636 6.13190 6.19946 6.25579 6.34518 6.37023 6.48950 6.50561 6.60015 6.64670 6.91592 7.00173 7.08870 7.19620 7.45800 7.59062 7.91002 8.36905 8.86072 8.89364 9.55567 10.64418 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013764 B = 0.005037 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.786490 B = 5557.977290 C = 6482.103220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.144 4.144 3 C 0.129 3.871 4 H 0.101 0.899 5 C -0.189 4.189 6 N -0.599 5.599 7 C 0.577 3.423 8 O -0.526 6.526 9 C -0.216 4.216 10 C -0.049 4.049 11 C -0.223 4.223 12 C -0.056 4.056 13 C -0.232 4.232 14 C 0.191 3.809 15 O -0.173 6.173 16 C -0.477 4.477 17 H 0.085 0.915 18 C 0.014 3.986 19 N -0.867 5.867 20 Si 1.096 2.904 21 H -0.280 1.280 22 H -0.272 1.272 23 H -0.281 1.281 24 C 0.141 3.859 25 H 0.094 0.906 26 C -0.184 4.184 27 C -0.144 4.144 28 C -0.161 4.161 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.132 0.868 41 H 0.288 0.712 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.083 0.917 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.050 0.950 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.867 -9.225 6.957 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.182 4.182 3 C 0.025 3.975 4 H 0.119 0.881 5 C -0.246 4.246 6 N -0.334 5.334 7 C 0.367 3.633 8 O -0.402 6.402 9 C -0.221 4.221 10 C -0.067 4.067 11 C -0.242 4.242 12 C -0.074 4.074 13 C -0.251 4.251 14 C 0.134 3.866 15 O -0.074 6.074 16 C -0.552 4.552 17 H 0.103 0.897 18 C -0.194 4.194 19 N -0.497 5.497 20 Si 0.919 3.081 21 H -0.206 1.206 22 H -0.197 1.197 23 H -0.207 1.207 24 C 0.037 3.963 25 H 0.112 0.888 26 C -0.242 4.242 27 C -0.182 4.182 28 C -0.218 4.218 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.137 0.863 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.150 0.850 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.101 0.899 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.237 -8.636 5.350 14.422 hybrid contribution 1.459 -0.287 1.018 1.802 sum 11.696 -8.924 6.368 16.030 Atomic orbital electron populations 1.22054 0.95152 1.01277 1.03552 1.22273 0.97050 0.96281 1.02554 1.21292 0.94937 0.94173 0.87085 0.88090 1.23040 0.96417 1.02745 1.02393 1.47906 1.64798 1.14755 1.05921 1.18225 0.75656 0.80428 0.89039 1.90768 1.51695 1.65735 1.31967 1.18752 0.94319 1.12269 0.96740 1.20914 0.97238 0.96555 0.92007 1.20492 0.97669 1.07507 0.98568 1.20896 0.92978 0.96164 0.97373 1.21149 1.01544 1.07760 0.94650 1.19010 0.87645 0.91513 0.88440 1.83685 1.23448 1.61332 1.38975 1.22289 0.93034 1.34939 1.04939 0.89704 1.26587 1.02755 0.98415 0.91625 1.70493 1.28411 1.27612 1.23180 0.83124 0.73027 0.75381 0.76550 1.20622 1.19699 1.20675 1.20920 0.93520 0.93990 0.87825 0.88757 1.22902 0.99729 0.99592 1.01970 1.22286 0.94537 0.98642 1.02728 1.22061 0.97446 0.99290 1.03035 0.92803 0.90967 0.93114 0.89904 0.91433 0.91880 0.92126 0.89967 0.86310 0.87145 0.87107 0.85010 0.90114 0.90282 0.91611 0.92500 0.89861 0.91371 0.91327 0.93129 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 8.66 37.16 0.32 -1.91 16 2 C -0.14 -1.65 4.57 -26.73 -0.12 -1.77 16 3 C 0.13 1.71 1.74 -67.93 -0.12 1.59 16 4 H 0.10 1.52 5.01 -51.93 -0.26 1.26 16 5 C -0.19 -1.97 6.93 37.15 0.26 -1.71 16 6 N -0.60 -9.85 1.76 -159.80 -0.28 -10.13 16 7 C 0.58 12.53 6.88 -12.47 -0.09 12.45 16 8 O -0.53 -13.82 16.07 -0.18 0.00 -13.82 16 9 C -0.22 -4.67 4.86 -104.81 -0.51 -5.18 16 10 C -0.05 -0.85 7.47 -39.20 -0.29 -1.14 16 11 C -0.22 -3.67 10.03 -39.61 -0.40 -4.06 16 12 C -0.06 -0.99 10.03 -39.53 -0.40 -1.38 16 13 C -0.23 -5.03 9.16 -39.44 -0.36 -5.39 16 14 C 0.19 4.71 6.64 -38.60 -0.26 4.46 16 15 O -0.17 -5.02 8.31 -4.64 -0.04 -5.05 16 16 C -0.48 -13.57 9.49 30.90 0.29 -13.28 16 17 H 0.09 2.24 5.21 -52.48 -0.27 1.96 16 18 C 0.01 0.39 5.49 -17.52 -0.10 0.30 16 19 N -0.87 -26.64 13.70 55.48 0.76 -25.88 16 20 Si 1.10 23.91 29.92 -169.99 -5.09 18.83 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 24 C 0.14 2.09 2.45 -67.94 -0.17 1.93 16 25 H 0.09 1.67 7.02 -51.93 -0.36 1.31 16 26 C -0.18 -2.57 7.59 37.16 0.28 -2.29 16 27 C -0.14 -1.59 4.57 -26.73 -0.12 -1.72 16 28 C -0.16 -1.81 8.65 37.16 0.32 -1.49 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.18 4.88 -51.93 -0.25 0.93 16 31 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 32 H 0.08 0.87 3.39 -51.93 -0.18 0.70 16 33 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 34 H 0.06 0.71 5.22 -51.93 -0.27 0.44 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.78 3.64 -51.93 -0.19 0.59 16 37 H 0.12 1.74 5.07 -52.49 -0.27 1.48 16 38 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 40 H 0.13 2.86 5.64 -52.49 -0.30 2.57 16 41 H 0.29 9.33 7.97 -40.82 -0.33 9.00 16 42 H 0.08 0.95 3.61 -51.93 -0.19 0.76 16 43 H 0.06 1.13 6.90 -51.93 -0.36 0.77 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.08 0.81 3.39 -51.93 -0.18 0.64 16 46 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 47 H 0.07 0.84 4.78 -51.93 -0.25 0.59 16 48 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -33.23 359.24 -7.35 -40.58 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -6.67 Total: 10.68 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -1.45 Total: -20.61 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.48 Total: -36.01 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.04 Total: -18.87 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -5.09 Total: 18.83 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.23 -7.35 -40.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184937120.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.706 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds