Wall clock time and date at job start Tue Mar 31 2020 12:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46746 * 2 1 4 4 H 1.09007 * 109.47172 * 52.00590 * 3 2 1 5 5 C 1.52995 * 109.47010 * 172.00232 * 3 2 1 6 6 N 1.46499 * 109.47491 * 292.00341 * 3 2 1 7 7 C 1.34773 * 119.99806 * 135.44258 * 6 3 2 8 8 O 1.21593 * 119.99753 * 175.66687 * 7 6 3 9 9 C 1.47540 * 120.00508 * 355.66652 * 7 6 3 10 10 C 1.39667 * 120.19253 * 52.20479 * 9 7 6 11 11 C 1.37830 * 119.91819 * 180.02562 * 10 9 7 12 12 C 1.38574 * 120.32210 * 0.02694 * 11 10 9 13 13 C 1.38027 * 120.40301 * 359.69168 * 12 11 10 14 14 C 1.38840 * 120.07047 * 0.56526 * 13 12 11 15 15 O 1.35512 * 120.16225 * 179.74574 * 14 13 12 16 16 C 1.34815 * 117.00399 * 5.63609 * 15 14 13 17 17 H 1.08004 * 119.99591 * 354.91487 * 16 15 14 18 18 C 1.38695 * 120.00594 * 174.91649 * 16 15 14 19 19 N 1.31519 * 119.99732 * 0.27317 * 18 16 15 20 20 Si 1.86799 * 120.00248 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47227 * 59.99859 * 20 18 16 22 22 H 1.48497 * 109.47035 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46923 * 299.99549 * 20 18 16 24 24 C 1.46491 * 119.99962 * 315.44419 * 6 3 2 25 25 H 1.09004 * 109.47495 * 195.77546 * 24 6 3 26 26 C 1.52999 * 109.47284 * 75.77476 * 24 6 3 27 27 C 1.53000 * 109.47299 * 315.77416 * 24 6 3 28 28 C 1.53002 * 109.47281 * 292.25111 * 27 24 6 29 29 H 1.08997 * 109.47561 * 299.99442 * 1 2 3 30 30 H 1.08996 * 109.47100 * 59.99889 * 1 2 3 31 31 H 1.09007 * 109.46946 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46880 * 240.00612 * 2 1 3 33 33 H 1.08996 * 109.47100 * 120.00111 * 2 1 3 34 34 H 1.08996 * 109.47521 * 172.32545 * 5 3 2 35 35 H 1.09004 * 109.47219 * 292.32727 * 5 3 2 36 36 H 1.09003 * 109.47170 * 52.32202 * 5 3 2 37 37 H 1.07994 * 120.04247 * 0.04539 * 10 9 7 38 38 H 1.07992 * 119.84130 * 179.97438 * 11 10 9 39 39 H 1.08003 * 119.80215 * 179.97438 * 12 11 10 40 40 H 1.08001 * 119.97011 * 180.30272 * 13 12 11 41 41 H 0.97000 * 119.99998 * 359.72835 * 19 18 16 42 42 H 1.09003 * 109.47138 * 293.02029 * 26 24 6 43 43 H 1.08998 * 109.47196 * 53.01755 * 26 24 6 44 44 H 1.09002 * 109.47665 * 173.01958 * 26 24 6 45 45 H 1.09004 * 109.46970 * 52.24896 * 27 24 6 46 46 H 1.08995 * 109.47436 * 172.25060 * 27 24 6 47 47 H 1.08995 * 109.46927 * 59.99638 * 28 27 24 48 48 H 1.08993 * 109.47201 * 179.97438 * 28 27 24 49 49 H 1.09004 * 109.46943 * 299.99801 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5646 1.9959 0.8099 5 6 3.5567 1.4473 0.2007 6 7 1.7148 2.0755 -1.2806 7 6 1.2087 3.3243 -1.3057 8 8 1.0126 3.8795 -2.3695 9 6 0.8924 4.0178 -0.0424 10 6 1.8548 4.1157 0.9651 11 6 1.5531 4.7643 2.1432 12 6 0.2982 5.3202 2.3343 13 6 -0.6609 5.2363 1.3453 14 6 -0.3766 4.5820 0.1542 15 8 -1.3186 4.4940 -0.8160 16 6 -2.4717 5.1620 -0.6120 17 1 -2.6448 5.6660 0.3274 18 6 -3.4357 5.2021 -1.6084 19 7 -3.2271 4.5839 -2.7503 20 14 -5.0331 6.1283 -1.3259 21 1 -4.7353 7.5581 -1.0570 22 1 -5.8889 6.0192 -2.5345 23 1 -5.7451 5.5434 -0.1613 24 6 1.9399 1.3510 -2.5337 25 1 1.9133 2.0516 -3.3684 26 6 0.8458 0.2974 -2.7173 27 6 3.3064 0.6644 -2.4877 28 6 4.4101 1.7239 -2.4988 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.9380 2.4593 0.0652 35 1 3.7910 1.1025 1.2079 36 1 4.0217 0.7832 -0.5280 37 1 2.8342 3.6840 0.8211 38 1 2.2980 4.8390 2.9215 39 1 0.0707 5.8263 3.2609 40 1 -1.6351 5.6763 1.4997 41 1 -2.3975 4.1032 -2.8972 42 1 0.9503 -0.4721 -1.9523 43 1 -0.1324 0.7696 -2.6262 44 1 0.9398 -0.1562 -3.7040 45 1 3.3834 0.0691 -1.5778 46 1 3.4167 0.0158 -3.3566 47 1 4.2999 2.3725 -1.6298 48 1 5.3836 1.2349 -2.4655 49 1 4.3331 2.3193 -3.4086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184937120.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:21 Heat of formation + Delta-G solvation = -35.793151 kcal Electronic energy + Delta-G solvation = -29432.620502 eV Core-core repulsion = 25746.837196 eV Total energy + Delta-G solvation = -3685.783306 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.04699 -40.63216 -38.68029 -38.24415 -34.96806 -34.37200 -33.53520 -32.74012 -31.64620 -30.67375 -29.21027 -27.04489 -25.58810 -24.74429 -24.22465 -23.38332 -22.35158 -21.98571 -20.61602 -20.27827 -19.06813 -18.08038 -17.25256 -16.81728 -16.45823 -15.90085 -15.79033 -15.61436 -15.47836 -15.29795 -15.20649 -15.02050 -14.70556 -14.60433 -14.54527 -14.22571 -14.10077 -13.30384 -13.19102 -13.02196 -12.90057 -12.57864 -12.50868 -12.49863 -12.38434 -12.35298 -12.23657 -12.14021 -11.97661 -11.89630 -11.73833 -11.61031 -11.42549 -10.89976 -10.81434 -10.65602 -9.82522 -9.61682 -9.16504 -8.99255 -6.29602 0.15942 0.60490 1.42994 1.57518 1.71952 1.74144 2.07296 2.31737 2.78119 3.05696 3.25392 3.54476 3.75020 3.85504 3.97770 4.00818 4.13317 4.14815 4.17753 4.21908 4.36737 4.43359 4.45704 4.52050 4.54279 4.58932 4.65116 4.72847 4.82279 4.83960 4.89079 4.93522 4.99458 5.02344 5.05874 5.07656 5.14037 5.15878 5.19823 5.29899 5.36665 5.43038 5.44565 5.55856 5.58738 5.61256 5.80223 5.96933 6.18485 6.44332 6.81911 7.26495 7.58340 8.43468 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013764 B = 0.005037 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.786490 B = 5557.977290 C = 6482.103220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.137 4.137 3 C 0.118 3.882 4 H 0.084 0.916 5 C -0.182 4.182 6 N -0.583 5.583 7 C 0.564 3.436 8 O -0.593 6.593 9 C -0.227 4.227 10 C -0.042 4.042 11 C -0.189 4.189 12 C -0.047 4.047 13 C -0.249 4.249 14 C 0.148 3.852 15 O -0.234 6.234 16 C -0.491 4.491 17 H 0.097 0.903 18 C -0.046 4.046 19 N -0.911 5.911 20 Si 1.147 2.853 21 H -0.259 1.259 22 H -0.275 1.275 23 H -0.254 1.254 24 C 0.133 3.867 25 H 0.052 0.948 26 C -0.177 4.177 27 C -0.132 4.132 28 C -0.161 4.161 29 H 0.036 0.964 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.155 0.845 38 H 0.167 0.833 39 H 0.156 0.844 40 H 0.122 0.878 41 H 0.256 0.744 42 H 0.106 0.894 43 H 0.017 0.983 44 H 0.074 0.926 45 H 0.109 0.891 46 H 0.089 0.911 47 H 0.059 0.941 48 H 0.081 0.919 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.441 -10.790 11.347 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.174 4.174 3 C 0.015 3.985 4 H 0.102 0.898 5 C -0.239 4.239 6 N -0.315 5.315 7 C 0.354 3.646 8 O -0.474 6.474 9 C -0.231 4.231 10 C -0.061 4.061 11 C -0.207 4.207 12 C -0.064 4.064 13 C -0.268 4.268 14 C 0.096 3.904 15 O -0.139 6.139 16 C -0.567 4.567 17 H 0.114 0.886 18 C -0.242 4.242 19 N -0.545 5.545 20 Si 0.962 3.038 21 H -0.183 1.183 22 H -0.200 1.200 23 H -0.178 1.178 24 C 0.030 3.970 25 H 0.070 0.930 26 C -0.234 4.234 27 C -0.170 4.170 28 C -0.218 4.218 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.172 0.828 38 H 0.185 0.815 39 H 0.174 0.826 40 H 0.140 0.860 41 H 0.064 0.936 42 H 0.124 0.876 43 H 0.036 0.964 44 H 0.093 0.907 45 H 0.127 0.873 46 H 0.107 0.893 47 H 0.078 0.922 48 H 0.100 0.900 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 13.893 -10.251 9.839 19.873 hybrid contribution 0.712 0.125 -0.052 0.725 sum 14.606 -10.126 9.787 20.289 Atomic orbital electron populations 1.22052 0.97438 1.01833 1.00872 1.22282 0.94827 0.95263 1.05020 1.21658 0.97528 0.94757 0.84523 0.89770 1.22996 0.93044 1.03018 1.04866 1.47961 1.62444 1.12985 1.08067 1.18545 0.75619 0.82086 0.88356 1.90726 1.54813 1.67872 1.34035 1.19176 0.94241 1.11863 0.97833 1.21380 0.97485 0.95966 0.91225 1.21202 0.97802 1.03082 0.98592 1.21415 0.92328 0.95119 0.97586 1.21311 1.02581 1.08042 0.94905 1.19773 0.88467 0.93115 0.89083 1.83698 1.24636 1.64121 1.41478 1.22685 0.93583 1.34999 1.05422 0.88589 1.28565 1.06421 0.98445 0.90818 1.70656 1.27148 1.31335 1.25323 0.82604 0.68795 0.75208 0.77233 1.18341 1.19974 1.17774 1.21102 0.96625 0.93325 0.85925 0.92973 1.22862 0.96904 0.99596 1.04048 1.22260 0.91170 0.98555 1.04966 1.22074 0.99007 0.99151 1.01597 0.94447 0.94826 0.90910 0.88455 0.87627 0.92504 0.88860 0.88473 0.82797 0.81541 0.82618 0.86032 0.93606 0.87569 0.96359 0.90681 0.87330 0.89260 0.92232 0.89994 0.95058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.48 8.66 71.98 0.62 -3.86 16 2 C -0.14 -2.70 4.57 30.60 0.14 -2.56 16 3 C 0.12 2.85 1.74 44.99 0.08 2.93 16 4 H 0.08 2.35 5.01 -2.38 -0.01 2.34 16 5 C -0.18 -2.91 6.93 71.98 0.50 -2.41 16 6 N -0.58 -19.74 1.76 -777.76 -1.37 -21.11 16 7 C 0.56 26.37 6.88 86.70 0.60 26.97 16 8 O -0.59 -34.80 16.07 1.22 0.02 -34.78 16 9 C -0.23 -10.13 4.86 -19.99 -0.10 -10.23 16 10 C -0.04 -1.36 7.47 22.52 0.17 -1.20 16 11 C -0.19 -5.18 10.03 22.25 0.22 -4.96 16 12 C -0.05 -1.48 10.03 22.30 0.22 -1.25 16 13 C -0.25 -10.93 9.16 22.36 0.20 -10.73 16 14 C 0.15 7.77 6.64 22.91 0.15 7.92 16 15 O -0.23 -14.95 8.31 -14.75 -0.12 -15.08 16 16 C -0.49 -30.35 9.49 67.93 0.64 -29.71 16 17 H 0.10 5.40 5.21 -2.91 -0.02 5.39 16 18 C -0.05 -2.81 5.49 84.85 0.47 -2.35 16 19 N -0.91 -61.76 13.70 21.62 0.30 -61.46 16 20 Si 1.15 50.57 29.92 68.60 2.05 52.63 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 24 C 0.13 4.12 2.45 44.99 0.11 4.23 16 25 H 0.05 2.06 7.02 -2.38 -0.02 2.04 16 26 C -0.18 -5.19 7.59 71.98 0.55 -4.65 16 27 C -0.13 -2.60 4.57 30.59 0.14 -2.46 16 28 C -0.16 -3.27 8.65 71.98 0.62 -2.65 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.03 1.18 4.88 -2.39 -0.01 1.17 16 31 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.10 1.65 3.39 -2.39 -0.01 1.65 16 33 H 0.11 1.42 8.13 -2.39 -0.02 1.40 16 34 H 0.06 1.02 5.22 -2.39 -0.01 1.01 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.10 1.29 3.64 -2.39 -0.01 1.28 16 37 H 0.15 3.85 5.07 -2.91 -0.01 3.84 16 38 H 0.17 2.95 8.06 -2.91 -0.02 2.92 16 39 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 40 H 0.12 5.47 5.64 -2.91 -0.02 5.46 16 41 H 0.26 18.72 7.97 -92.71 -0.74 17.98 16 42 H 0.11 2.46 3.61 -2.39 -0.01 2.45 16 43 H 0.02 0.69 6.90 -2.39 -0.02 0.67 16 44 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.11 1.60 3.39 -2.38 -0.01 1.59 16 46 H 0.09 1.45 8.13 -2.39 -0.02 1.43 16 47 H 0.06 1.31 4.78 -2.39 -0.01 1.30 16 48 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 Total: -1.00 -89.29 359.24 7.24 -82.06 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: 1.02 Total: 34.70 kcal Atomic # 6 Polarization: -42.29 SS G_CDS: 5.34 Total: -36.94 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -1.07 Total: -82.58 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -0.10 Total: -49.86 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 2.05 Total: 52.63 kcal Total: -89.29 7.24 -82.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184937120.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.262 kcal (2) G-P(sol) polarization free energy of solvation -89.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds