Wall clock time and date at job start Tue Mar 31 2020 12:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47069 * 2 1 4 4 H 1.08997 * 109.46847 * 54.54240 * 3 2 1 5 5 C 1.50701 * 109.47280 * 174.54594 * 3 2 1 6 6 H 1.07995 * 120.00163 * 119.99778 * 5 3 2 7 7 C 1.37880 * 119.99559 * 299.99457 * 5 3 2 8 8 N 1.31515 * 120.00211 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99624 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47248 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47186 * 120.00554 * 9 7 5 12 12 H 1.48504 * 109.46992 * 240.00398 * 9 7 5 13 13 N 1.46906 * 109.46968 * 294.54233 * 3 2 1 14 14 C 1.46891 * 110.99985 * 154.44149 * 13 3 2 15 15 C 1.50706 * 109.47262 * 174.76550 * 14 13 3 16 16 C 1.38392 * 119.92161 * 269.72729 * 15 14 13 17 17 C 1.38344 * 120.29802 * 179.76488 * 16 15 14 18 18 C 1.37962 * 120.15395 * 0.50857 * 17 16 15 19 19 C 1.39611 * 119.84552 * 359.74912 * 18 17 16 20 20 C 1.47724 * 120.14878 * 180.02562 * 19 18 17 21 21 O 1.21477 * 119.99770 * 179.97438 * 20 19 18 22 22 O 1.34707 * 120.00444 * 359.97438 * 20 19 18 23 23 C 1.45189 * 117.00425 * 179.97438 * 22 20 19 24 24 C 1.53003 * 109.47300 * 59.99795 * 23 22 20 25 25 C 1.53009 * 109.47322 * 179.97438 * 23 22 20 26 26 C 1.53000 * 109.47177 * 299.99499 * 23 22 20 27 27 C 1.37913 * 119.92659 * 90.00146 * 15 14 13 28 28 H 1.08996 * 109.47098 * 305.91473 * 1 2 3 29 29 H 1.08998 * 109.47479 * 65.91879 * 1 2 3 30 30 H 1.09005 * 109.46835 * 185.91786 * 1 2 3 31 31 H 1.09002 * 109.47522 * 239.99807 * 2 1 3 32 32 H 1.09002 * 109.47424 * 119.99544 * 2 1 3 33 33 H 0.96999 * 120.00249 * 180.02562 * 8 7 5 34 34 H 1.00904 * 110.99816 * 30.48969 * 13 3 2 35 35 H 1.09004 * 109.47715 * 294.76576 * 14 13 3 36 36 H 1.09002 * 109.47101 * 54.76655 * 14 13 3 37 37 H 1.07998 * 119.84925 * 0.02562 * 16 15 14 38 38 H 1.07998 * 119.92194 * 180.25780 * 17 16 15 39 39 H 1.07996 * 120.07911 * 179.76495 * 18 17 16 40 40 H 1.08994 * 109.46888 * 59.99893 * 24 23 22 41 41 H 1.09000 * 109.47304 * 180.02562 * 24 23 22 42 42 H 1.08998 * 109.46942 * 300.00001 * 24 23 22 43 43 H 1.08993 * 109.47238 * 59.99580 * 25 23 22 44 44 H 1.09000 * 109.47263 * 179.97438 * 25 23 22 45 45 H 1.09004 * 109.46679 * 299.99727 * 25 23 22 46 46 H 1.08998 * 109.46943 * 60.00074 * 26 23 22 47 47 H 1.09000 * 109.47232 * 179.97438 * 26 23 22 48 48 H 1.08997 * 109.47414 * 299.99901 * 26 23 22 49 49 H 1.08008 * 120.07364 * 359.95911 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5990 1.9837 0.8371 5 6 3.5409 1.4447 0.1350 6 1 4.1520 1.8872 -0.6377 7 6 4.1340 0.8818 1.2452 8 7 3.3898 0.3426 2.1860 9 14 5.9944 0.8852 1.4130 10 1 6.5971 1.5469 0.2281 11 1 6.3792 1.6239 2.6424 12 1 6.4859 -0.5133 1.5016 13 7 1.6608 2.0960 -1.2599 14 6 1.5678 3.5521 -1.0905 15 6 1.3043 4.1975 -2.4267 16 6 2.3646 4.5953 -3.2222 17 6 2.1317 5.1841 -4.4523 18 6 0.8392 5.3881 -4.8894 19 6 -0.2351 4.9940 -4.0896 20 6 -1.6218 5.2087 -4.5513 21 8 -2.5545 4.8643 -3.8533 22 8 -1.8521 5.7863 -5.7462 23 6 -3.2393 5.9653 -6.1355 24 6 -3.9474 6.8504 -5.1078 25 6 -3.3011 6.6324 -7.5112 26 6 -3.9315 4.6022 -6.1978 27 6 0.0072 4.3954 -2.8514 28 1 -0.3633 0.6028 0.8323 29 1 -0.3634 0.4193 -0.9382 30 1 -0.3633 -1.0222 0.1060 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8070 -0.0531 2.9673 34 1 0.7965 1.7176 -1.6176 35 1 0.7523 3.7871 -0.4065 36 1 2.5048 3.9310 -0.6825 37 1 3.3783 4.4416 -2.8831 38 1 2.9637 5.4885 -5.0699 39 1 0.6588 5.8513 -5.8482 40 1 -3.4543 7.8214 -5.0636 41 1 -4.9890 6.9844 -5.3999 42 1 -3.9035 6.3755 -4.1277 43 1 -2.7966 6.0023 -8.2435 44 1 -4.3425 6.7663 -7.8036 45 1 -2.8081 7.6035 -7.4664 46 1 -3.8875 4.1273 -5.2177 47 1 -4.9731 4.7366 -6.4896 48 1 -3.4271 3.9717 -6.9300 49 1 -0.8193 4.0879 -2.2278 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273888223.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:45 Heat of formation + Delta-G solvation = -74.334512 kcal Electronic energy + Delta-G solvation = -26738.336946 eV Core-core repulsion = 23050.882361 eV Total energy + Delta-G solvation = -3687.454585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.95272 -39.11755 -37.00365 -36.26111 -34.32082 -33.09912 -31.66500 -31.10673 -29.94181 -27.69300 -27.64927 -26.71722 -24.77394 -24.54045 -22.60753 -21.63748 -21.20910 -19.64654 -19.43200 -17.44332 -16.85243 -16.30768 -16.07281 -16.03963 -15.31126 -14.82815 -14.77666 -14.55163 -14.35159 -13.89696 -13.82473 -13.73963 -13.15619 -12.79985 -12.76574 -12.56513 -12.44167 -12.21158 -12.16832 -12.08007 -12.03972 -11.68902 -11.64191 -11.38672 -11.30036 -11.03903 -10.97274 -10.80269 -10.59255 -10.59030 -10.10517 -9.97369 -9.71825 -9.63950 -9.12054 -8.94431 -8.65609 -8.35718 -7.26224 -5.97588 -4.01912 0.77735 1.43747 2.50337 2.57872 3.30546 3.38790 3.43163 3.85594 4.41640 4.44185 4.48454 4.51725 4.63335 4.87351 4.95842 5.18675 5.20622 5.25526 5.30397 5.37170 5.40384 5.44739 5.45752 5.51017 5.56887 5.64749 5.71293 5.81926 5.98201 5.99753 6.04316 6.11615 6.17483 6.18246 6.31659 6.32157 6.39727 6.45285 6.49752 6.79528 6.85893 6.95362 7.07667 7.17899 7.47302 7.75460 7.77297 7.90403 8.26108 8.37913 8.72396 9.05962 9.63113 11.07822 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.021894 B = 0.002591 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.603302 B =10806.028663 C =11698.474959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.218 3.782 4 H 0.003 0.997 5 C -0.492 4.492 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.681 5.681 14 C 0.101 3.899 15 C -0.075 4.075 16 C -0.059 4.059 17 C -0.136 4.136 18 C -0.073 4.073 19 C -0.135 4.135 20 C 0.515 3.485 21 O -0.504 6.504 22 O -0.348 6.348 23 C 0.117 3.883 24 C -0.184 4.184 25 C -0.140 4.140 26 C -0.184 4.184 27 C -0.052 4.052 28 H 0.042 0.958 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.041 0.959 32 H 0.100 0.900 33 H 0.259 0.741 34 H 0.318 0.682 35 H 0.027 0.973 36 H 0.087 0.913 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.085 0.915 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.372 12.353 -16.824 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.021 0.979 5 C -0.531 4.531 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.312 5.312 14 C -0.028 4.028 15 C -0.075 4.075 16 C -0.078 4.078 17 C -0.154 4.154 18 C -0.091 4.091 19 C -0.136 4.136 20 C 0.361 3.639 21 O -0.393 6.393 22 O -0.266 6.266 23 C 0.081 3.919 24 C -0.241 4.241 25 C -0.197 4.197 26 C -0.241 4.241 27 C -0.071 4.071 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.118 0.882 33 H 0.069 0.931 34 H 0.136 0.864 35 H 0.045 0.955 36 H 0.105 0.895 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.103 0.897 47 H 0.089 0.911 48 H 0.081 0.919 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.012 12.183 -16.689 23.414 hybrid contribution -0.005 -0.034 0.654 0.655 sum -11.017 12.149 -16.034 22.936 Atomic orbital electron populations 1.21885 0.99563 0.99787 0.99577 1.21767 0.91254 1.00249 1.03111 1.19198 0.95559 0.90034 0.84129 0.97927 1.21233 0.91164 1.36467 1.04248 0.91982 1.24970 0.98111 0.95655 0.95873 1.69881 1.34620 1.39470 1.09598 0.86497 0.85793 0.77613 0.77820 1.19787 1.21258 1.21161 1.60741 1.36329 1.00932 1.33185 1.20844 1.01249 0.90516 0.90177 1.20100 0.91972 0.97589 0.97879 1.21451 0.99828 0.93494 0.92996 1.21142 0.96537 1.00912 0.96838 1.21339 0.91965 0.96945 0.98851 1.19044 0.89609 1.07648 0.97294 1.21178 0.89919 0.73895 0.78942 1.90736 1.44966 1.47920 1.55713 1.86585 1.30949 1.72943 1.36091 1.22170 0.78072 0.96261 0.95379 1.22497 1.00706 0.99769 1.01091 1.21847 1.02820 1.01137 0.93903 1.22498 1.00780 0.96196 1.04626 1.21172 0.97351 0.94782 0.93783 0.93864 0.94603 0.94350 0.94016 0.88191 0.93122 0.86429 0.95484 0.89490 0.84906 0.85393 0.85075 0.92006 0.91102 0.89680 0.91435 0.90378 0.91473 0.89653 0.91107 0.91933 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.64 37.16 0.36 -2.59 16 2 C -0.13 -2.94 5.36 -26.73 -0.14 -3.08 16 3 C 0.22 5.31 2.02 -68.86 -0.14 5.17 16 4 H 0.00 0.08 7.85 -51.93 -0.41 -0.32 16 5 C -0.49 -13.26 8.57 -34.44 -0.30 -13.55 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.38 16 8 N -0.90 -25.22 11.29 55.43 0.63 -24.59 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.68 -14.13 6.26 -109.22 -0.68 -14.82 16 14 C 0.10 1.85 5.58 -4.98 -0.03 1.82 16 15 C -0.07 -1.16 5.43 -104.68 -0.57 -1.73 16 16 C -0.06 -0.83 9.69 -39.49 -0.38 -1.21 16 17 C -0.14 -1.60 10.03 -39.64 -0.40 -2.00 16 18 C -0.07 -0.86 9.62 -39.17 -0.38 -1.24 16 19 C -0.13 -1.86 5.87 -104.98 -0.62 -2.47 16 20 C 0.51 7.06 7.21 34.61 0.25 7.31 16 21 O -0.50 -7.70 11.89 -19.25 -0.23 -7.93 16 22 O -0.35 -4.13 9.14 -40.51 -0.37 -4.50 16 23 C 0.12 1.13 1.13 -90.61 -0.10 1.03 16 24 C -0.18 -1.72 8.37 37.16 0.31 -1.41 16 25 C -0.14 -0.96 8.85 37.16 0.33 -0.63 16 26 C -0.18 -1.76 8.37 37.16 0.31 -1.45 16 27 C -0.05 -0.78 9.24 -39.17 -0.36 -1.14 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.03 0.63 6.65 -51.93 -0.35 0.29 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.32 6.23 6.63 -39.29 -0.26 5.97 16 35 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 36 H 0.09 1.68 7.88 -51.93 -0.41 1.27 16 37 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.13 1.30 7.61 -52.49 -0.40 0.90 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 1.00 5.88 -51.93 -0.31 0.69 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.08 1.02 5.88 -51.93 -0.31 0.72 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.13 2.00 7.65 -52.48 -0.40 1.59 16 LS Contribution 393.43 15.07 5.93 5.93 Total: -1.00 -29.08 393.43 -9.88 -38.96 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -8.18 Total: 6.58 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -1.95 Total: -15.78 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: -0.06 Total: -39.41 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.60 Total: -12.43 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.08 -9.88 -38.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273888223.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.379 kcal (2) G-P(sol) polarization free energy of solvation -29.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds