Wall clock time and date at job start Tue Mar 31 2020 12:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47069 * 2 1 4 4 H 1.08997 * 109.46847 * 54.54240 * 3 2 1 5 5 C 1.50701 * 109.47280 * 174.54594 * 3 2 1 6 6 H 1.07995 * 120.00163 * 119.99778 * 5 3 2 7 7 C 1.37880 * 119.99559 * 299.99457 * 5 3 2 8 8 N 1.31515 * 120.00211 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99624 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47248 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47186 * 120.00554 * 9 7 5 12 12 H 1.48504 * 109.46992 * 240.00398 * 9 7 5 13 13 N 1.46906 * 109.46968 * 294.54233 * 3 2 1 14 14 C 1.46891 * 110.99985 * 154.44149 * 13 3 2 15 15 C 1.50706 * 109.47262 * 174.76550 * 14 13 3 16 16 C 1.38392 * 119.92161 * 269.72729 * 15 14 13 17 17 C 1.38344 * 120.29802 * 179.76488 * 16 15 14 18 18 C 1.37962 * 120.15395 * 0.50857 * 17 16 15 19 19 C 1.39611 * 119.84552 * 359.74912 * 18 17 16 20 20 C 1.47724 * 120.14878 * 180.02562 * 19 18 17 21 21 O 1.21477 * 119.99770 * 179.97438 * 20 19 18 22 22 O 1.34707 * 120.00444 * 359.97438 * 20 19 18 23 23 C 1.45189 * 117.00425 * 179.97438 * 22 20 19 24 24 C 1.53003 * 109.47300 * 59.99795 * 23 22 20 25 25 C 1.53009 * 109.47322 * 179.97438 * 23 22 20 26 26 C 1.53000 * 109.47177 * 299.99499 * 23 22 20 27 27 C 1.37913 * 119.92659 * 90.00146 * 15 14 13 28 28 H 1.08996 * 109.47098 * 305.91473 * 1 2 3 29 29 H 1.08998 * 109.47479 * 65.91879 * 1 2 3 30 30 H 1.09005 * 109.46835 * 185.91786 * 1 2 3 31 31 H 1.09002 * 109.47522 * 239.99807 * 2 1 3 32 32 H 1.09002 * 109.47424 * 119.99544 * 2 1 3 33 33 H 0.96999 * 120.00249 * 180.02562 * 8 7 5 34 34 H 1.00904 * 110.99816 * 30.48969 * 13 3 2 35 35 H 1.09004 * 109.47715 * 294.76576 * 14 13 3 36 36 H 1.09002 * 109.47101 * 54.76655 * 14 13 3 37 37 H 1.07998 * 119.84925 * 0.02562 * 16 15 14 38 38 H 1.07998 * 119.92194 * 180.25780 * 17 16 15 39 39 H 1.07996 * 120.07911 * 179.76495 * 18 17 16 40 40 H 1.08994 * 109.46888 * 59.99893 * 24 23 22 41 41 H 1.09000 * 109.47304 * 180.02562 * 24 23 22 42 42 H 1.08998 * 109.46942 * 300.00001 * 24 23 22 43 43 H 1.08993 * 109.47238 * 59.99580 * 25 23 22 44 44 H 1.09000 * 109.47263 * 179.97438 * 25 23 22 45 45 H 1.09004 * 109.46679 * 299.99727 * 25 23 22 46 46 H 1.08998 * 109.46943 * 60.00074 * 26 23 22 47 47 H 1.09000 * 109.47232 * 179.97438 * 26 23 22 48 48 H 1.08997 * 109.47414 * 299.99901 * 26 23 22 49 49 H 1.08008 * 120.07364 * 359.95911 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5990 1.9837 0.8371 5 6 3.5409 1.4447 0.1350 6 1 4.1520 1.8872 -0.6377 7 6 4.1340 0.8818 1.2452 8 7 3.3898 0.3426 2.1860 9 14 5.9944 0.8852 1.4130 10 1 6.5971 1.5469 0.2281 11 1 6.3792 1.6239 2.6424 12 1 6.4859 -0.5133 1.5016 13 7 1.6608 2.0960 -1.2599 14 6 1.5678 3.5521 -1.0905 15 6 1.3043 4.1975 -2.4267 16 6 2.3646 4.5953 -3.2222 17 6 2.1317 5.1841 -4.4523 18 6 0.8392 5.3881 -4.8894 19 6 -0.2351 4.9940 -4.0896 20 6 -1.6218 5.2087 -4.5513 21 8 -2.5545 4.8643 -3.8533 22 8 -1.8521 5.7863 -5.7462 23 6 -3.2393 5.9653 -6.1355 24 6 -3.9474 6.8504 -5.1078 25 6 -3.3011 6.6324 -7.5112 26 6 -3.9315 4.6022 -6.1978 27 6 0.0072 4.3954 -2.8514 28 1 -0.3633 0.6028 0.8323 29 1 -0.3634 0.4193 -0.9382 30 1 -0.3633 -1.0222 0.1060 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8070 -0.0531 2.9673 34 1 0.7965 1.7176 -1.6176 35 1 0.7523 3.7871 -0.4065 36 1 2.5048 3.9310 -0.6825 37 1 3.3783 4.4416 -2.8831 38 1 2.9637 5.4885 -5.0699 39 1 0.6588 5.8513 -5.8482 40 1 -3.4543 7.8214 -5.0636 41 1 -4.9890 6.9844 -5.3999 42 1 -3.9035 6.3755 -4.1277 43 1 -2.7966 6.0023 -8.2435 44 1 -4.3425 6.7663 -7.8036 45 1 -2.8081 7.6035 -7.4664 46 1 -3.8875 4.1273 -5.2177 47 1 -4.9731 4.7366 -6.4896 48 1 -3.4271 3.9717 -6.9300 49 1 -0.8193 4.0879 -2.2278 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273888223.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:44 Heat of formation + Delta-G solvation = -88.769947 kcal Electronic energy + Delta-G solvation = -26738.962913 eV Core-core repulsion = 23050.882361 eV Total energy + Delta-G solvation = -3688.080552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.92542 -40.21180 -38.16281 -37.81608 -35.22137 -34.69541 -33.46544 -32.16571 -31.39285 -28.59115 -28.38587 -28.28761 -26.17051 -25.75368 -24.37555 -22.64323 -22.31619 -21.46998 -20.46261 -18.51047 -18.37256 -17.74500 -17.04527 -17.02898 -16.79765 -16.53359 -15.92495 -15.75582 -15.60085 -15.33055 -14.87429 -14.66969 -14.56589 -14.20936 -14.11506 -13.63062 -13.47886 -13.35221 -13.15649 -13.04855 -12.96384 -12.92434 -12.86485 -12.77033 -12.58897 -12.48644 -12.47815 -12.21505 -12.05392 -11.97185 -11.55892 -11.43159 -11.41177 -11.06296 -11.04772 -10.43060 -10.00463 -9.82349 -9.04136 -8.05781 -6.17785 -0.29186 0.36039 1.41805 1.44111 1.52286 1.55682 1.59594 2.45072 2.77152 3.19806 3.55504 3.65769 3.74822 3.79159 3.90212 3.94837 3.97139 4.13486 4.30349 4.40646 4.46447 4.51429 4.54129 4.59779 4.63195 4.67514 4.75675 4.80515 4.82846 4.83897 4.88578 4.92821 5.03586 5.08648 5.12664 5.20649 5.25641 5.28087 5.29138 5.33808 5.39393 5.49757 5.57122 5.64967 5.75265 5.87272 5.89857 6.34963 6.46323 6.75466 6.92165 6.96004 7.51110 8.97959 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.021894 B = 0.002591 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.603302 B =10806.028663 C =11698.474959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.223 3.777 4 H -0.030 1.030 5 C -0.507 4.507 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.922 5.922 9 Si 0.957 3.043 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.678 5.678 14 C 0.107 3.893 15 C -0.089 4.089 16 C -0.067 4.067 17 C -0.123 4.123 18 C -0.059 4.059 19 C -0.144 4.144 20 C 0.515 3.485 21 O -0.526 6.526 22 O -0.346 6.346 23 C 0.106 3.894 24 C -0.181 4.181 25 C -0.135 4.135 26 C -0.182 4.182 27 C -0.061 4.061 28 H 0.036 0.964 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.260 0.740 34 H 0.326 0.674 35 H 0.022 0.978 36 H 0.070 0.930 37 H 0.133 0.867 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.099 0.901 45 H 0.072 0.928 46 H 0.056 0.944 47 H 0.092 0.908 48 H 0.064 0.936 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.324 13.603 -19.718 26.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.115 3.885 4 H -0.013 1.013 5 C -0.546 4.546 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.562 5.562 9 Si 0.783 3.217 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.310 5.310 14 C -0.022 4.022 15 C -0.090 4.090 16 C -0.086 4.086 17 C -0.141 4.141 18 C -0.077 4.077 19 C -0.146 4.146 20 C 0.362 3.638 21 O -0.418 6.418 22 O -0.263 6.263 23 C 0.070 3.930 24 C -0.238 4.238 25 C -0.191 4.191 26 C -0.239 4.239 27 C -0.080 4.080 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.144 0.856 35 H 0.040 0.960 36 H 0.089 0.911 37 H 0.151 0.849 38 H 0.182 0.818 39 H 0.177 0.823 40 H 0.084 0.916 41 H 0.111 0.889 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.118 0.882 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.111 0.889 48 H 0.083 0.917 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.972 13.448 -19.608 26.186 hybrid contribution -0.086 -0.363 1.487 1.533 sum -11.059 13.085 -18.121 24.937 Atomic orbital electron populations 1.21755 0.96555 1.01125 1.00304 1.21598 0.93966 0.99055 1.01311 1.18981 0.94379 0.90588 0.84508 1.01267 1.21481 0.92499 1.36433 1.04211 0.92759 1.25714 1.02383 0.95362 0.95606 1.70014 1.36247 1.39988 1.09958 0.85516 0.80674 0.77609 0.77875 1.19133 1.20893 1.20828 1.60644 1.36851 1.02379 1.31116 1.20724 1.00182 0.89098 0.92167 1.19787 0.92925 0.99237 0.97002 1.21571 0.99289 0.93832 0.93880 1.21475 0.97613 0.99143 0.95860 1.21670 0.91313 0.95436 0.99305 1.19164 0.90509 1.07776 0.97102 1.21196 0.89631 0.73682 0.79331 1.90740 1.45630 1.48883 1.56500 1.86570 1.32636 1.72274 1.34868 1.22549 0.76899 0.96546 0.96958 1.22473 1.02208 0.99530 0.99637 1.21872 1.04455 1.01022 0.91797 1.22478 1.02311 0.96117 1.03019 1.21047 0.96670 0.95684 0.94563 0.94516 0.92757 0.92379 0.94417 0.91207 0.93117 0.85637 0.95971 0.91137 0.84885 0.81808 0.82307 0.91571 0.88924 0.92505 0.91043 0.88196 0.90937 0.92515 0.88906 0.91688 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.46 9.64 71.98 0.69 -4.77 16 2 C -0.12 -5.79 5.36 30.59 0.16 -5.63 16 3 C 0.22 11.29 2.02 44.17 0.09 11.38 16 4 H -0.03 -1.70 7.85 -2.39 -0.02 -1.72 16 5 C -0.51 -28.04 8.57 25.60 0.22 -27.82 16 6 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.40 5.29 84.66 0.45 0.85 16 8 N -0.92 -53.21 11.29 21.45 0.24 -52.97 16 9 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 13 N -0.68 -28.94 6.26 -499.45 -3.12 -32.06 16 14 C 0.11 4.08 5.58 85.56 0.48 4.56 16 15 C -0.09 -2.80 5.43 -19.90 -0.11 -2.91 16 16 C -0.07 -1.80 9.69 22.33 0.22 -1.59 16 17 C -0.12 -2.53 10.03 22.23 0.22 -2.31 16 18 C -0.06 -1.24 9.62 22.54 0.22 -1.03 16 19 C -0.14 -3.84 5.87 -20.10 -0.12 -3.96 16 20 C 0.51 13.86 7.21 70.33 0.51 14.37 16 21 O -0.53 -16.45 11.89 19.91 0.24 -16.21 16 22 O -0.35 -7.63 9.14 -56.16 -0.51 -8.15 16 23 C 0.11 1.84 1.13 -10.79 -0.01 1.83 16 24 C -0.18 -3.15 8.37 71.98 0.60 -2.55 16 25 C -0.13 -1.41 8.85 71.99 0.64 -0.77 16 26 C -0.18 -3.25 8.37 71.98 0.60 -2.65 16 27 C -0.06 -1.84 9.24 22.53 0.21 -1.63 16 28 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 1.90 6.65 -2.39 -0.02 1.88 16 30 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.07 3.79 5.94 -2.39 -0.01 3.78 16 33 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 34 H 0.33 12.94 6.63 -89.69 -0.59 12.34 16 35 H 0.02 0.85 8.08 -2.38 -0.02 0.83 16 36 H 0.07 2.87 7.88 -2.39 -0.02 2.85 16 37 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 38 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.16 2.49 7.61 -2.91 -0.02 2.46 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 1.33 5.88 -2.39 -0.01 1.32 16 43 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.06 1.36 5.88 -2.39 -0.01 1.35 16 47 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.12 3.83 7.65 -2.91 -0.02 3.81 16 Total: -1.00 -64.83 393.43 4.27 -60.56 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: 0.33 Total: 27.50 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 5.07 Total: -24.62 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -2.88 Total: -85.03 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.28 Total: -24.36 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -64.83 4.27 -60.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273888223.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.210 kcal (2) G-P(sol) polarization free energy of solvation -64.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds