Wall clock time and date at job start Tue Mar 31 2020 14:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47376 * 2 1 4 4 C 1.53008 * 109.47128 * 240.00525 * 2 1 3 5 5 C 1.52996 * 109.47128 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47515 * 59.99453 * 5 4 2 7 7 H 1.09007 * 109.47139 * 59.99894 * 6 5 4 8 8 C 1.50703 * 109.47516 * 179.97438 * 6 5 4 9 9 O 1.21280 * 119.99731 * 34.91188 * 8 6 5 10 10 N 1.34777 * 119.99925 * 214.90957 * 8 6 5 11 11 C 1.46495 * 120.00289 * 354.54327 * 10 8 6 12 12 C 1.50699 * 109.47000 * 94.87700 * 11 10 8 13 13 H 1.08003 * 119.99924 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99983 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00016 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99997 * 179.97438 * 14 12 11 17 17 H 1.48510 * 109.47057 * 90.00215 * 16 14 12 18 18 H 1.48498 * 109.47514 * 209.99961 * 16 14 12 19 19 H 1.48500 * 109.47340 * 330.00527 * 16 14 12 20 20 C 1.46503 * 119.99641 * 174.81952 * 10 8 6 21 21 C 1.50696 * 109.47016 * 89.99939 * 20 10 8 22 22 C 1.34511 * 125.79126 * 89.99905 * 21 20 10 23 23 C 1.41379 * 106.84394 * 180.02562 * 22 21 20 24 24 C 1.34508 * 106.84349 * 359.97438 * 23 22 21 25 25 O 1.34303 * 125.79070 * 269.69441 * 21 20 10 26 26 C 1.52999 * 109.47279 * 300.00533 * 6 5 4 27 27 C 1.52994 * 109.47552 * 120.00313 * 2 1 3 28 28 H 1.09007 * 109.47191 * 299.99885 * 27 2 1 29 29 C 1.52999 * 109.47288 * 59.99819 * 27 2 1 30 30 H 1.09001 * 109.46634 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46994 * 299.99572 * 1 2 3 32 32 H 1.09003 * 109.47394 * 60.00256 * 1 2 3 33 33 H 1.08997 * 109.47211 * 59.99544 * 4 2 1 34 34 H 1.09007 * 109.46577 * 299.99526 * 4 2 1 35 35 H 1.09001 * 109.47376 * 299.99475 * 5 4 2 36 36 H 1.09000 * 109.47212 * 179.97438 * 5 4 2 37 37 H 1.08999 * 109.47256 * 214.88017 * 11 10 8 38 38 H 1.09003 * 109.47454 * 334.88241 * 11 10 8 39 39 H 0.96992 * 119.99791 * 179.97438 * 15 14 12 40 40 H 1.08997 * 109.46772 * 209.99610 * 20 10 8 41 41 H 1.08999 * 109.46724 * 330.00156 * 20 10 8 42 42 H 1.08006 * 126.58121 * 359.96532 * 22 21 20 43 43 H 1.08001 * 126.58110 * 180.02562 * 23 22 21 44 44 H 1.07997 * 125.79668 * 180.02562 * 24 23 22 45 45 H 1.09003 * 109.47532 * 180.02562 * 26 6 5 46 46 H 1.09007 * 109.46513 * 299.99744 * 26 6 5 47 47 H 1.08997 * 109.46862 * 60.00128 * 29 27 2 48 48 H 1.08997 * 109.47259 * 180.02562 * 29 27 2 49 49 H 1.08998 * 109.47104 * 300.00232 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5700 -0.7217 -1.2490 6 6 4.0795 -1.4433 0.0002 7 1 3.7158 -2.4709 0.0000 8 6 5.5865 -1.4444 0.0002 9 8 6.1936 -0.4936 -0.4452 10 7 6.2596 -2.5020 0.4951 11 6 5.5314 -3.5967 1.1412 12 6 5.2690 -4.6878 0.1354 13 1 5.6109 -4.5771 -0.8831 14 6 4.5933 -5.8280 0.5157 15 7 4.1774 -5.9630 1.7560 16 14 4.2674 -7.1802 -0.7312 17 1 5.3962 -8.1452 -0.7213 18 1 3.0095 -7.8863 -0.3783 19 1 4.1375 -6.5843 -2.0851 20 6 7.7202 -2.5539 0.3924 21 6 8.3325 -1.9137 1.6115 22 6 8.6534 -2.5457 2.7547 23 6 9.1956 -1.5709 3.6234 24 6 9.1742 -0.4016 2.9590 25 8 8.6557 -0.6163 1.7387 26 6 3.5695 -0.7222 1.2494 27 6 2.0401 -0.7213 1.2491 28 1 1.6768 -0.2075 2.1392 29 6 1.5301 -2.1638 1.2491 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6766 -0.2073 -2.1393 34 1 1.6767 -1.7489 -1.2493 35 1 3.9337 0.3058 -1.2488 36 1 3.9333 -1.2359 -2.1388 37 1 6.1275 -3.9950 1.9622 38 1 4.5831 -3.2237 1.5282 39 1 3.7018 -6.7649 2.0234 40 1 8.0430 -3.5929 0.3268 41 1 8.0409 -2.0166 -0.5000 42 1 8.5212 -3.5961 2.9684 43 1 9.5583 -1.7340 4.6275 44 1 9.5198 0.5479 3.3401 45 1 3.9329 -1.2360 2.1394 46 1 3.9332 0.3054 1.2496 47 1 1.8934 -2.6775 0.3591 48 1 1.8931 -2.6775 2.1393 49 1 0.4401 -2.1638 1.2492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294394840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:18 Heat of formation + Delta-G solvation = -49.832881 kcal Electronic energy + Delta-G solvation = -28704.478719 eV Core-core repulsion = 25018.086604 eV Total energy + Delta-G solvation = -3686.392114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.14144 -39.96024 -38.07460 -35.17584 -32.93881 -32.48322 -32.45603 -31.42214 -30.23363 -27.48076 -27.31371 -26.03929 -24.99157 -23.02004 -22.03153 -21.54362 -21.30399 -20.15828 -18.54407 -17.98079 -17.11498 -16.56309 -16.21338 -15.94922 -15.42316 -14.83186 -14.52850 -14.48752 -14.09646 -13.96135 -13.74332 -13.30482 -12.93950 -12.60684 -12.44565 -12.43090 -12.38778 -12.17809 -12.15977 -11.98659 -11.63959 -11.55869 -11.26741 -11.15011 -10.97407 -10.90657 -10.77833 -10.68123 -10.41906 -10.23522 -10.12463 -9.81840 -9.72499 -9.55927 -9.54665 -8.93054 -8.58100 -8.13378 -7.81768 -6.20805 -4.28511 2.06747 2.94093 3.20243 3.25925 3.28417 3.31712 3.54994 4.03657 4.31290 4.91620 4.95926 4.98238 5.09861 5.12541 5.32581 5.38322 5.42545 5.50531 5.52054 5.61025 5.71685 5.73569 5.79071 5.86956 5.92556 5.94060 6.06450 6.13626 6.14635 6.14832 6.18988 6.26228 6.31527 6.33575 6.40900 6.45828 6.50412 6.55934 6.63327 6.65740 6.68891 6.79201 6.86828 6.96975 7.19643 7.47557 7.56765 7.73099 8.02087 8.30870 8.76629 9.00994 9.39652 10.85607 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008302 B = 0.006134 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3371.954352 B = 4563.515424 C = 6829.659591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 H 0.065 0.935 4 C -0.114 4.114 5 C -0.098 4.098 6 C -0.107 4.107 7 H 0.116 0.884 8 C 0.522 3.478 9 O -0.566 6.566 10 N -0.593 5.593 11 C 0.236 3.764 12 C -0.540 4.540 13 H 0.062 0.938 14 C 0.068 3.932 15 N -0.887 5.887 16 Si 0.893 3.107 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.196 3.804 21 C -0.012 4.012 22 C -0.205 4.205 23 C -0.216 4.216 24 C -0.055 4.055 25 O -0.166 6.166 26 C -0.098 4.098 27 C -0.080 4.080 28 H 0.065 0.935 29 C -0.153 4.153 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.034 0.966 38 H 0.045 0.955 39 H 0.265 0.735 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.148 0.852 43 H 0.143 0.857 44 H 0.195 0.805 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.067 0.933 48 H 0.059 0.941 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.012 8.646 0.792 8.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.084 0.916 4 C -0.151 4.151 5 C -0.136 4.136 6 C -0.128 4.128 7 H 0.134 0.866 8 C 0.310 3.690 9 O -0.446 6.446 10 N -0.323 5.323 11 C 0.117 3.883 12 C -0.578 4.578 13 H 0.080 0.920 14 C -0.135 4.135 15 N -0.525 5.525 16 Si 0.720 3.280 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 C 0.072 3.928 21 C -0.064 4.064 22 C -0.225 4.225 23 C -0.236 4.236 24 C -0.123 4.123 25 O -0.061 6.061 26 C -0.136 4.136 27 C -0.099 4.099 28 H 0.084 0.916 29 C -0.210 4.210 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.129 0.871 41 H 0.105 0.895 42 H 0.166 0.834 43 H 0.161 0.839 44 H 0.212 0.788 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.086 0.914 48 H 0.078 0.922 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.856 9.200 0.454 9.251 hybrid contribution -0.060 -1.097 -0.109 1.104 sum -0.916 8.103 0.345 8.162 Atomic orbital electron populations 1.21884 0.95711 1.01938 1.00957 1.21142 0.94974 0.99208 0.95191 0.91606 1.21628 0.95474 1.01094 0.96936 1.21333 0.94774 1.00883 0.96603 1.21370 0.91489 1.03548 0.96385 0.86588 1.20692 0.90220 0.81503 0.76543 1.90593 1.70670 1.34819 1.48540 1.48332 1.04817 1.21613 1.57551 1.19505 0.92353 0.83367 0.93094 1.21483 1.37411 1.02067 0.96888 0.92024 1.24906 0.95232 0.98075 0.95295 1.69922 1.37956 1.28210 1.16421 0.86576 0.77844 0.81912 0.81655 1.20544 1.21064 1.19737 1.19692 0.81251 1.00005 0.91894 1.23265 1.02303 0.81128 0.99704 1.21662 1.05897 1.01180 0.93716 1.21774 1.07219 0.93091 1.01466 1.23942 1.03811 1.00248 0.84289 1.84116 1.61604 1.27861 1.32526 1.21422 0.95119 1.00089 0.96942 1.21059 0.94747 0.96873 0.97201 0.91627 1.21989 1.00036 0.95587 1.03360 0.92228 0.93100 0.93191 0.92354 0.91310 0.91522 0.92100 0.94751 0.93702 0.92532 0.87062 0.89546 0.83407 0.83947 0.78806 0.91607 0.92174 0.91409 0.92233 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.84 37.16 0.33 -1.29 16 2 C -0.09 -1.11 2.50 -90.62 -0.23 -1.33 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 4 C -0.11 -1.56 4.93 -26.73 -0.13 -1.69 16 5 C -0.10 -1.60 4.86 -26.73 -0.13 -1.73 16 6 C -0.11 -1.96 1.41 -91.77 -0.13 -2.09 16 7 H 0.12 2.34 4.48 -51.92 -0.23 2.10 16 8 C 0.52 10.96 6.66 -10.98 -0.07 10.89 16 9 O -0.57 -12.98 15.91 5.56 0.09 -12.89 16 10 N -0.59 -12.45 2.44 -176.44 -0.43 -12.88 16 11 C 0.24 5.42 4.75 -5.20 -0.02 5.40 16 12 C -0.54 -13.37 8.99 -34.44 -0.31 -13.68 16 13 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 14 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -23.42 13.29 55.43 0.74 -22.68 16 16 Si 0.89 19.89 29.54 -169.99 -5.02 14.86 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 C 0.20 3.72 5.92 -5.19 -0.03 3.69 16 21 C -0.01 -0.22 6.90 -35.63 -0.25 -0.47 16 22 C -0.20 -3.52 10.81 -39.70 -0.43 -3.95 16 23 C -0.22 -3.24 10.91 -39.71 -0.43 -3.67 16 24 C -0.05 -0.81 12.09 29.41 0.36 -0.45 16 25 O -0.17 -3.09 10.65 5.68 0.06 -3.02 16 26 C -0.10 -1.62 4.57 -26.76 -0.12 -1.74 16 27 C -0.08 -1.13 2.72 -90.65 -0.25 -1.38 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 29 C -0.15 -2.30 8.14 37.16 0.30 -2.00 16 30 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.98 6.43 -51.92 -0.33 0.64 16 35 H 0.07 1.12 7.86 -51.93 -0.41 0.71 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 38 H 0.05 1.07 5.66 -51.93 -0.29 0.77 16 39 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 40 H 0.11 1.98 8.07 -51.93 -0.42 1.56 16 41 H 0.09 1.64 7.50 -51.93 -0.39 1.25 16 42 H 0.15 2.45 8.06 -52.48 -0.42 2.03 16 43 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.20 2.04 8.06 -52.49 -0.42 1.61 16 45 H 0.07 1.17 7.49 -51.93 -0.39 0.78 16 46 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 47 H 0.07 1.12 4.81 -51.93 -0.25 0.88 16 48 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.05 0.66 6.43 -51.93 -0.33 0.33 16 LS Contribution 382.28 15.07 5.76 5.76 Total: -1.00 -28.43 382.28 -8.45 -36.87 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -8.00 Total: 7.86 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -1.64 Total: -13.88 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.31 Total: -35.56 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.15 Total: -15.92 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.43 -8.45 -36.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294394840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.959 kcal (2) G-P(sol) polarization free energy of solvation -28.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds