Wall clock time and date at job start Tue Mar 31 2020 14:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47376 * 2 1 4 4 C 1.53008 * 109.47128 * 240.00525 * 2 1 3 5 5 C 1.52996 * 109.47128 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47515 * 59.99453 * 5 4 2 7 7 H 1.09007 * 109.47139 * 59.99894 * 6 5 4 8 8 C 1.50703 * 109.47516 * 179.97438 * 6 5 4 9 9 O 1.21280 * 119.99731 * 34.91188 * 8 6 5 10 10 N 1.34777 * 119.99925 * 214.90957 * 8 6 5 11 11 C 1.46495 * 120.00289 * 354.54327 * 10 8 6 12 12 C 1.50699 * 109.47000 * 94.87700 * 11 10 8 13 13 H 1.08003 * 119.99924 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99983 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00016 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99997 * 179.97438 * 14 12 11 17 17 H 1.48510 * 109.47057 * 90.00215 * 16 14 12 18 18 H 1.48498 * 109.47514 * 209.99961 * 16 14 12 19 19 H 1.48500 * 109.47340 * 330.00527 * 16 14 12 20 20 C 1.46503 * 119.99641 * 174.81952 * 10 8 6 21 21 C 1.50696 * 109.47016 * 89.99939 * 20 10 8 22 22 C 1.34511 * 125.79126 * 89.99905 * 21 20 10 23 23 C 1.41379 * 106.84394 * 180.02562 * 22 21 20 24 24 C 1.34508 * 106.84349 * 359.97438 * 23 22 21 25 25 O 1.34303 * 125.79070 * 269.69441 * 21 20 10 26 26 C 1.52999 * 109.47279 * 300.00533 * 6 5 4 27 27 C 1.52994 * 109.47552 * 120.00313 * 2 1 3 28 28 H 1.09007 * 109.47191 * 299.99885 * 27 2 1 29 29 C 1.52999 * 109.47288 * 59.99819 * 27 2 1 30 30 H 1.09001 * 109.46634 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46994 * 299.99572 * 1 2 3 32 32 H 1.09003 * 109.47394 * 60.00256 * 1 2 3 33 33 H 1.08997 * 109.47211 * 59.99544 * 4 2 1 34 34 H 1.09007 * 109.46577 * 299.99526 * 4 2 1 35 35 H 1.09001 * 109.47376 * 299.99475 * 5 4 2 36 36 H 1.09000 * 109.47212 * 179.97438 * 5 4 2 37 37 H 1.08999 * 109.47256 * 214.88017 * 11 10 8 38 38 H 1.09003 * 109.47454 * 334.88241 * 11 10 8 39 39 H 0.96992 * 119.99791 * 179.97438 * 15 14 12 40 40 H 1.08997 * 109.46772 * 209.99610 * 20 10 8 41 41 H 1.08999 * 109.46724 * 330.00156 * 20 10 8 42 42 H 1.08006 * 126.58121 * 359.96532 * 22 21 20 43 43 H 1.08001 * 126.58110 * 180.02562 * 23 22 21 44 44 H 1.07997 * 125.79668 * 180.02562 * 24 23 22 45 45 H 1.09003 * 109.47532 * 180.02562 * 26 6 5 46 46 H 1.09007 * 109.46513 * 299.99744 * 26 6 5 47 47 H 1.08997 * 109.46862 * 60.00128 * 29 27 2 48 48 H 1.08997 * 109.47259 * 180.02562 * 29 27 2 49 49 H 1.08998 * 109.47104 * 300.00232 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5700 -0.7217 -1.2490 6 6 4.0795 -1.4433 0.0002 7 1 3.7158 -2.4709 0.0000 8 6 5.5865 -1.4444 0.0002 9 8 6.1936 -0.4936 -0.4452 10 7 6.2596 -2.5020 0.4951 11 6 5.5314 -3.5967 1.1412 12 6 5.2690 -4.6878 0.1354 13 1 5.6109 -4.5771 -0.8831 14 6 4.5933 -5.8280 0.5157 15 7 4.1774 -5.9630 1.7560 16 14 4.2674 -7.1802 -0.7312 17 1 5.3962 -8.1452 -0.7213 18 1 3.0095 -7.8863 -0.3783 19 1 4.1375 -6.5843 -2.0851 20 6 7.7202 -2.5539 0.3924 21 6 8.3325 -1.9137 1.6115 22 6 8.6534 -2.5457 2.7547 23 6 9.1956 -1.5709 3.6234 24 6 9.1742 -0.4016 2.9590 25 8 8.6557 -0.6163 1.7387 26 6 3.5695 -0.7222 1.2494 27 6 2.0401 -0.7213 1.2491 28 1 1.6768 -0.2075 2.1392 29 6 1.5301 -2.1638 1.2491 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6766 -0.2073 -2.1393 34 1 1.6767 -1.7489 -1.2493 35 1 3.9337 0.3058 -1.2488 36 1 3.9333 -1.2359 -2.1388 37 1 6.1275 -3.9950 1.9622 38 1 4.5831 -3.2237 1.5282 39 1 3.7018 -6.7649 2.0234 40 1 8.0430 -3.5929 0.3268 41 1 8.0409 -2.0166 -0.5000 42 1 8.5212 -3.5961 2.9684 43 1 9.5583 -1.7340 4.6275 44 1 9.5198 0.5479 3.3401 45 1 3.9329 -1.2360 2.1394 46 1 3.9332 0.3054 1.2496 47 1 1.8934 -2.6775 0.3591 48 1 1.8931 -2.6775 2.1393 49 1 0.4401 -2.1638 1.2492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294394840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:17 Heat of formation + Delta-G solvation = -62.669964 kcal Electronic energy + Delta-G solvation = -28705.035377 eV Core-core repulsion = 25018.086604 eV Total energy + Delta-G solvation = -3686.948772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.46962 -41.44916 -39.48453 -36.93100 -34.70320 -33.95495 -33.76674 -32.64600 -31.66941 -29.15388 -28.66755 -27.40136 -26.33243 -24.87019 -23.26397 -22.85425 -22.61543 -21.48935 -20.04831 -19.28269 -18.75796 -18.16851 -17.88238 -17.51103 -16.76514 -16.40111 -16.17187 -15.88046 -15.41581 -15.35409 -14.89994 -14.76377 -14.38107 -14.12618 -13.91616 -13.83848 -13.70895 -13.56887 -13.45508 -13.29055 -13.22101 -12.93294 -12.71399 -12.67526 -12.57255 -12.44483 -12.13711 -12.06891 -11.93273 -11.74195 -11.53073 -11.39003 -11.00137 -10.86098 -10.80348 -10.63886 -10.45004 -9.66477 -9.39179 -8.18003 -6.32136 0.73291 1.42001 1.45022 1.53401 1.64094 1.70383 2.17132 2.38261 2.49969 3.12790 3.60271 3.74470 3.75554 3.83680 4.01279 4.14571 4.18946 4.23741 4.27909 4.36810 4.44065 4.45653 4.53926 4.55085 4.65358 4.75625 4.81692 4.85133 4.90747 4.93077 5.01149 5.02190 5.08594 5.09909 5.13528 5.18547 5.19964 5.24123 5.27326 5.34227 5.39789 5.51983 5.56645 5.60937 5.65913 5.73471 5.78721 6.06147 6.24220 6.54412 6.80697 7.27666 7.41302 8.87731 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008302 B = 0.006134 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3371.954352 B = 4563.515424 C = 6829.659591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 H 0.072 0.928 4 C -0.109 4.109 5 C -0.094 4.094 6 C -0.101 4.101 7 H 0.096 0.904 8 C 0.514 3.486 9 O -0.588 6.588 10 N -0.596 5.596 11 C 0.257 3.743 12 C -0.546 4.546 13 H 0.054 0.946 14 C 0.030 3.970 15 N -0.913 5.913 16 Si 0.950 3.050 17 H -0.276 1.276 18 H -0.281 1.281 19 H -0.271 1.271 20 C 0.194 3.806 21 C -0.042 4.042 22 C -0.207 4.207 23 C -0.222 4.222 24 C -0.045 4.045 25 O -0.191 6.191 26 C -0.092 4.092 27 C -0.074 4.074 28 H 0.083 0.917 29 C -0.147 4.147 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.016 0.984 38 H 0.034 0.966 39 H 0.267 0.733 40 H 0.116 0.884 41 H 0.082 0.918 42 H 0.147 0.853 43 H 0.174 0.826 44 H 0.239 0.761 45 H 0.046 0.954 46 H 0.060 0.940 47 H 0.048 0.952 48 H 0.036 0.964 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.923 9.592 0.994 9.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 H 0.090 0.910 4 C -0.146 4.146 5 C -0.132 4.132 6 C -0.122 4.122 7 H 0.114 0.886 8 C 0.304 3.696 9 O -0.470 6.470 10 N -0.325 5.325 11 C 0.136 3.864 12 C -0.585 4.585 13 H 0.072 0.928 14 C -0.172 4.172 15 N -0.552 5.552 16 Si 0.776 3.224 17 H -0.202 1.202 18 H -0.206 1.206 19 H -0.196 1.196 20 C 0.071 3.929 21 C -0.093 4.093 22 C -0.227 4.227 23 C -0.241 4.241 24 C -0.113 4.113 25 O -0.087 6.087 26 C -0.130 4.130 27 C -0.093 4.093 28 H 0.102 0.898 29 C -0.204 4.204 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.035 0.965 38 H 0.052 0.948 39 H 0.076 0.924 40 H 0.134 0.866 41 H 0.100 0.900 42 H 0.165 0.835 43 H 0.191 0.809 44 H 0.255 0.745 45 H 0.064 0.936 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.056 0.944 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.756 10.138 0.656 10.310 hybrid contribution 0.326 -1.361 -0.110 1.403 sum -1.430 8.778 0.545 8.910 Atomic orbital electron populations 1.21841 0.93691 1.02218 1.02280 1.21125 0.96565 0.98939 0.93500 0.90976 1.21616 0.93086 1.01327 0.98598 1.21318 0.96955 0.99964 0.94952 1.21348 0.89571 1.02948 0.98380 0.88619 1.21219 0.91398 0.81033 0.75906 1.90564 1.71383 1.35435 1.49607 1.48348 1.05772 1.21129 1.57289 1.19108 0.91597 0.83419 0.92252 1.21611 1.37374 1.02724 0.96742 0.92768 1.25542 0.94963 0.99893 0.96756 1.70010 1.38514 1.28848 1.17820 0.85677 0.77768 0.79407 0.79585 1.20152 1.20625 1.19557 1.19707 0.80222 1.00474 0.92505 1.23054 1.04511 0.81739 1.00027 1.21873 1.05322 1.01670 0.93853 1.22133 1.07010 0.92350 1.02578 1.24875 1.01700 1.02025 0.82676 1.84090 1.62388 1.27720 1.34495 1.21390 0.97227 0.99317 0.95116 1.21054 0.92546 0.96648 0.99038 0.89846 1.21923 1.01377 0.95803 1.01293 0.92439 0.91942 0.91799 0.90185 0.91887 0.91910 0.93175 0.96546 0.94787 0.92378 0.86594 0.89999 0.83476 0.80858 0.74478 0.93556 0.92162 0.93316 0.94435 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.84 71.98 0.64 -2.03 16 2 C -0.08 -1.94 2.50 -10.79 -0.03 -1.96 16 3 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.11 -2.83 4.93 30.60 0.15 -2.68 16 5 C -0.09 -3.08 4.86 30.59 0.15 -2.93 16 6 C -0.10 -3.83 1.41 -11.54 -0.02 -3.85 16 7 H 0.10 4.03 4.48 -2.38 -0.01 4.02 16 8 C 0.51 22.45 6.66 87.66 0.58 23.04 16 9 O -0.59 -27.78 15.91 -3.03 -0.05 -27.82 16 10 N -0.60 -26.15 2.44 -830.51 -2.03 -28.17 16 11 C 0.26 12.31 4.75 85.63 0.41 12.71 16 12 C -0.55 -27.79 8.99 25.60 0.23 -27.56 16 13 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 14 C 0.03 1.51 5.46 84.65 0.46 1.98 16 15 N -0.91 -48.95 13.29 21.45 0.28 -48.66 16 16 Si 0.95 40.91 29.54 68.60 2.03 42.93 16 17 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 18 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 C 0.19 7.73 5.92 85.63 0.51 8.24 16 21 C -0.04 -1.61 6.90 24.83 0.17 -1.43 16 22 C -0.21 -7.15 10.81 22.19 0.24 -6.91 16 23 C -0.22 -6.28 10.91 22.19 0.24 -6.04 16 24 C -0.05 -1.26 12.09 66.97 0.81 -0.45 16 25 O -0.19 -7.08 10.65 -2.57 -0.03 -7.11 16 26 C -0.09 -3.12 4.57 30.58 0.14 -2.98 16 27 C -0.07 -2.03 2.72 -10.81 -0.03 -2.06 16 28 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 29 C -0.15 -4.40 8.14 71.98 0.59 -3.81 16 30 H 0.06 1.10 6.43 -2.39 -0.02 1.09 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 1.73 6.43 -2.38 -0.02 1.71 16 35 H 0.06 2.10 7.86 -2.39 -0.02 2.08 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.02 0.84 8.11 -2.39 -0.02 0.82 16 38 H 0.03 1.71 5.66 -2.39 -0.01 1.69 16 39 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 40 H 0.12 4.35 8.07 -2.39 -0.02 4.33 16 41 H 0.08 3.27 7.50 -2.39 -0.02 3.25 16 42 H 0.15 4.99 8.06 -2.91 -0.02 4.96 16 43 H 0.17 3.72 8.06 -2.91 -0.02 3.69 16 44 H 0.24 4.15 8.06 -2.91 -0.02 4.12 16 45 H 0.05 1.71 7.49 -2.39 -0.02 1.69 16 46 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 47 H 0.05 1.64 4.81 -2.39 -0.01 1.63 16 48 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.07 1.82 6.43 -2.39 -0.02 1.80 16 Total: -1.00 -62.04 382.28 6.38 -55.67 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.93 Total: 31.92 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 5.24 Total: -18.75 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -1.74 Total: -76.84 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.08 Total: -34.94 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Total: -62.04 6.38 -55.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294394840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.004 kcal (2) G-P(sol) polarization free energy of solvation -62.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds