Wall clock time and date at job start Tue Mar 31 2020 14:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47091 * 2 1 4 4 O 1.42897 * 109.47142 * 179.97438 * 3 2 1 5 5 C 1.35901 * 117.00366 * 179.97438 * 4 3 2 6 6 C 1.38791 * 120.02314 * 0.02562 * 5 4 3 7 7 C 1.38162 * 120.05332 * 179.70251 * 6 5 4 8 8 C 1.38193 * 120.10621 * 0.54605 * 7 6 5 9 9 C 1.50708 * 119.96997 * 179.72091 * 8 7 6 10 10 N 1.46895 * 109.47207 * 259.73129 * 9 8 7 11 11 C 1.46906 * 110.99647 * 180.02562 * 10 9 8 12 12 H 1.09000 * 110.01685 * 325.06263 * 11 10 9 13 13 C 1.53873 * 110.03251 * 86.45479 * 11 10 9 14 14 C 1.54265 * 106.59723 * 119.28193 * 13 11 10 15 15 C 1.54893 * 104.19597 * 23.61063 * 14 13 11 16 16 H 1.09005 * 110.75370 * 80.55760 * 15 14 13 17 17 C 1.50703 * 110.75769 * 203.73881 * 15 14 13 18 18 H 1.07995 * 119.99758 * 118.54464 * 17 15 14 19 19 C 1.37873 * 119.99707 * 298.54894 * 17 15 14 20 20 N 1.31522 * 119.99597 * 179.97438 * 19 17 15 21 21 Si 1.86799 * 120.00559 * 359.97438 * 19 17 15 22 22 H 1.48503 * 109.47293 * 89.99718 * 21 19 17 23 23 H 1.48495 * 109.47315 * 210.00291 * 21 19 17 24 24 H 1.48498 * 109.46870 * 329.99943 * 21 19 17 25 25 C 1.54270 * 110.03070 * 203.62373 * 11 10 9 26 26 C 1.38747 * 120.05474 * 359.45912 * 8 7 6 27 27 O 1.35898 * 120.02660 * 180.24833 * 26 8 7 28 28 C 1.38607 * 120.03313 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.47313 * 299.99582 * 1 2 3 30 30 H 1.08994 * 109.47241 * 60.00215 * 1 2 3 31 31 H 1.09008 * 109.47128 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47008 * 239.99984 * 2 1 3 33 33 H 1.09004 * 109.47278 * 120.00352 * 2 1 3 34 34 H 1.09000 * 109.47208 * 60.00106 * 3 2 1 35 35 H 1.08997 * 109.47401 * 299.99914 * 3 2 1 36 36 H 1.08005 * 119.97578 * 359.95674 * 6 5 4 37 37 H 1.08001 * 119.94416 * 180.27421 * 7 6 5 38 38 H 1.08995 * 109.46484 * 139.72869 * 9 8 7 39 39 H 1.08999 * 109.47033 * 19.73515 * 9 8 7 40 40 H 1.00897 * 111.00420 * 303.95683 * 10 9 8 41 41 H 1.08996 * 110.02961 * 238.56824 * 13 11 10 42 42 H 1.09003 * 110.03167 * 359.97438 * 13 11 10 43 43 H 1.09010 * 110.48228 * 142.28511 * 14 13 11 44 44 H 1.08998 * 110.49010 * 264.93470 * 14 13 11 45 45 H 0.96995 * 119.99816 * 179.97438 * 20 19 17 46 46 H 1.08998 * 110.48293 * 335.77930 * 25 11 10 47 47 H 1.09001 * 110.49024 * 98.42662 * 25 11 10 48 48 H 0.96701 * 114.00579 * 89.99565 * 27 26 8 49 49 H 1.08005 * 120.05023 * 0.05039 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4689 1.4425 0.0006 5 6 4.0860 2.6533 0.0001 6 6 3.3306 3.8177 -0.0003 7 6 3.9573 5.0490 0.0054 8 6 5.3371 5.1246 0.0002 9 6 6.0174 6.4693 0.0002 10 7 6.4535 6.7974 -1.3637 11 6 7.1231 8.1044 -1.4021 12 1 6.6577 8.7832 -0.6874 13 6 8.6181 7.9406 -1.0770 14 6 9.3951 8.4395 -2.3128 15 6 8.4086 9.4031 -3.0182 16 1 8.4130 10.3809 -2.5366 17 6 8.7409 9.5298 -4.4826 18 1 8.0208 9.2264 -5.2280 19 6 9.9644 10.0332 -4.8708 20 7 10.2546 10.1434 -6.1488 21 14 11.2099 10.5587 -3.5815 22 1 12.0753 9.4044 -3.2298 23 1 12.0478 11.6590 -4.1222 24 1 10.4965 11.0306 -2.3676 25 6 7.0436 8.6972 -2.8242 26 6 6.0966 3.9634 0.0006 27 8 7.4536 4.0384 0.0006 28 6 5.4701 2.7266 0.0012 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 2.2520 3.7612 -0.0010 37 1 3.3677 5.9539 0.0095 38 1 6.8836 6.4382 0.6611 39 1 5.3197 7.2295 0.3513 40 1 7.0507 6.0745 -1.7361 41 1 8.8785 8.5405 -0.2050 42 1 8.8468 6.8913 -0.8902 43 1 10.2960 8.9719 -2.0076 44 1 9.6471 7.6052 -2.9674 45 1 11.1152 10.4979 -6.4219 46 1 6.9160 7.9045 -3.5613 47 1 6.2285 9.4177 -2.8922 48 1 7.8463 4.0605 0.8840 49 1 6.0596 1.8216 0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295008412.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:41 Heat of formation + Delta-G solvation = -72.444303 kcal Electronic energy + Delta-G solvation = -26266.342082 eV Core-core repulsion = 22578.969462 eV Total energy + Delta-G solvation = -3687.372619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.62591 -39.04114 -37.92983 -36.38155 -34.70406 -34.02870 -32.18999 -30.76206 -29.88922 -28.23704 -27.41514 -26.74260 -24.40549 -23.27700 -23.08902 -21.89532 -21.14996 -19.66114 -19.17061 -19.03150 -17.18497 -16.70869 -16.64872 -16.58154 -16.02548 -15.40423 -14.96942 -14.76618 -14.63816 -14.43828 -13.93240 -13.83239 -13.73303 -13.32791 -12.86188 -12.66655 -12.60516 -12.55385 -12.39751 -12.03020 -11.99204 -11.83871 -11.62531 -11.37529 -11.32869 -10.91438 -10.86866 -10.76531 -10.62700 -10.24381 -9.94687 -9.79053 -9.66285 -9.29945 -8.98578 -8.91491 -8.46832 -8.36323 -7.94419 -5.99402 -3.97116 1.01671 1.18563 2.77722 3.33700 3.39726 3.42089 3.44480 4.06049 4.39227 4.40548 4.48785 4.59778 4.62784 4.71110 4.77239 4.91262 4.91429 4.94909 5.09460 5.19637 5.26609 5.29350 5.42050 5.47574 5.49913 5.57584 5.57725 5.66097 5.67366 5.73974 5.76550 5.98676 6.11625 6.13749 6.34393 6.35379 6.41275 6.46327 6.53694 6.64053 6.78534 6.91081 6.98937 7.11020 7.25439 7.44385 7.49591 7.69458 7.75402 7.87445 8.63102 9.05986 9.64224 11.14205 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.026802 B = 0.002159 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.432006 B =12966.122237 C =13220.572585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.058 3.942 4 O -0.317 6.317 5 C 0.142 3.858 6 C -0.217 4.217 7 C -0.047 4.047 8 C -0.136 4.136 9 C 0.108 3.892 10 N -0.676 5.676 11 C 0.082 3.918 12 H 0.068 0.932 13 C -0.151 4.151 14 C -0.127 4.127 15 C 0.011 3.989 16 H 0.030 0.970 17 C -0.505 4.505 18 H 0.074 0.926 19 C 0.068 3.932 20 N -0.904 5.904 21 Si 0.884 3.116 22 H -0.280 1.280 23 H -0.297 1.297 24 H -0.266 1.266 25 C -0.091 4.091 26 C 0.151 3.849 27 O -0.490 6.490 28 C -0.181 4.181 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.034 0.966 39 H 0.074 0.926 40 H 0.347 0.653 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.042 0.958 44 H 0.066 0.934 45 H 0.262 0.738 46 H 0.068 0.932 47 H 0.051 0.949 48 H 0.390 0.610 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.574 -17.889 18.892 30.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.231 6.231 5 C 0.096 3.904 6 C -0.236 4.236 7 C -0.066 4.066 8 C -0.137 4.137 9 C -0.021 4.021 10 N -0.307 5.307 11 C -0.027 4.027 12 H 0.086 0.914 13 C -0.190 4.190 14 C -0.165 4.165 15 C -0.009 4.009 16 H 0.048 0.952 17 C -0.543 4.543 18 H 0.092 0.908 19 C -0.133 4.133 20 N -0.543 5.543 21 Si 0.713 3.287 22 H -0.206 1.206 23 H -0.224 1.224 24 H -0.192 1.192 25 C -0.129 4.129 26 C 0.106 3.894 27 O -0.300 6.300 28 C -0.200 4.200 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.052 0.948 39 H 0.093 0.907 40 H 0.167 0.833 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.070 0.930 48 H 0.247 0.753 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.040 -17.778 17.970 30.485 hybrid contribution 1.641 0.173 1.518 2.242 sum -15.399 -17.605 19.488 30.444 Atomic orbital electron populations 1.21694 0.94173 1.02590 1.02298 1.21490 0.96089 0.94819 1.03763 1.22892 0.78341 0.98864 1.01593 1.86035 1.21377 1.27008 1.88632 1.18679 0.91648 0.84122 0.95943 1.21235 1.00060 0.92217 1.10076 1.20732 0.93355 0.97166 0.95307 1.20124 0.93828 0.94897 1.04859 1.20665 0.97731 0.92262 0.91463 1.60785 1.46339 1.04736 1.18860 1.22357 0.91435 0.89682 0.99254 0.91414 1.22895 0.97063 0.99962 0.99059 1.22757 0.98080 1.00428 0.95267 1.20108 0.90852 0.93481 0.96412 0.95241 1.21037 1.01459 1.41713 0.90109 0.90830 1.25011 0.98138 0.95157 0.94954 1.69914 1.22962 1.46635 1.14814 0.86879 0.81542 0.78061 0.82185 1.20611 1.22394 1.19154 1.22256 0.98196 0.98940 0.93506 1.17951 0.82934 0.90839 0.97698 1.84862 1.15784 1.96037 1.33324 1.20547 0.91869 0.98320 1.09236 0.92361 0.92241 0.91689 0.90737 0.90863 0.91988 0.91817 0.85391 0.85126 0.94813 0.90729 0.83314 0.93115 0.92699 0.93985 0.91570 0.92832 0.91300 0.92982 0.75333 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.91 37.16 0.37 -0.25 16 2 C -0.12 -0.70 6.30 -26.73 -0.17 -0.87 16 3 C 0.06 0.41 4.74 37.15 0.18 0.59 16 4 O -0.32 -3.27 10.13 -19.43 -0.20 -3.47 16 5 C 0.14 1.56 6.68 -39.24 -0.26 1.30 16 6 C -0.22 -2.17 9.04 -39.40 -0.36 -2.53 16 7 C -0.05 -0.50 9.66 -39.63 -0.38 -0.88 16 8 C -0.14 -1.60 5.41 -104.45 -0.56 -2.17 16 9 C 0.11 1.33 5.30 -4.98 -0.03 1.31 16 10 N -0.68 -10.39 6.19 -106.80 -0.66 -11.05 16 11 C 0.08 1.39 3.23 -66.59 -0.21 1.18 16 12 H 0.07 1.07 7.83 -51.93 -0.41 0.67 16 13 C -0.15 -2.63 6.37 -25.61 -0.16 -2.79 16 14 C -0.13 -2.77 5.08 -25.07 -0.13 -2.90 16 15 C 0.01 0.25 2.30 -89.78 -0.21 0.05 16 16 H 0.03 0.72 7.37 -51.93 -0.38 0.34 16 17 C -0.51 -14.47 9.12 -34.44 -0.31 -14.79 16 18 H 0.07 2.29 8.03 -52.49 -0.42 1.86 16 19 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 20 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 21 Si 0.88 22.36 24.46 -169.99 -4.16 18.20 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 24 H -0.27 -6.45 6.48 56.52 0.37 -6.09 16 25 C -0.09 -1.86 5.95 -25.07 -0.15 -2.01 16 26 C 0.15 1.77 6.67 -39.24 -0.26 1.50 16 27 O -0.49 -5.37 12.67 -19.42 -0.25 -5.61 16 28 C -0.18 -2.06 9.92 -39.29 -0.39 -2.45 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.23 8.14 -51.92 -0.42 -0.19 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.37 7.66 -51.93 -0.40 -0.02 16 35 H 0.06 0.42 7.66 -51.93 -0.40 0.03 16 36 H 0.13 0.99 6.29 -52.48 -0.33 0.66 16 37 H 0.13 1.19 8.03 -52.49 -0.42 0.77 16 38 H 0.03 0.40 7.80 -51.93 -0.41 -0.01 16 39 H 0.07 0.86 7.92 -51.93 -0.41 0.45 16 40 H 0.35 5.70 8.12 -39.29 -0.32 5.38 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.89 7.59 -51.93 -0.39 0.50 16 43 H 0.04 0.93 4.91 -51.92 -0.25 0.68 16 44 H 0.07 1.51 8.04 -51.93 -0.42 1.10 16 45 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.07 1.50 7.95 -51.93 -0.41 1.09 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.39 2.47 9.06 45.56 0.41 2.89 16 49 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 386.87 15.07 5.83 5.83 Total: -1.00 -32.64 386.87 -9.31 -41.96 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -7.51 Total: 5.43 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -3.14 Total: -23.81 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.11 Total: -38.53 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.44 Total: -9.08 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.16 Total: 18.20 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.64 -9.31 -41.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295008412.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.489 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds