Wall clock time and date at job start Tue Mar 31 2020 14:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47091 * 2 1 4 4 O 1.42897 * 109.47142 * 179.97438 * 3 2 1 5 5 C 1.35901 * 117.00366 * 179.97438 * 4 3 2 6 6 C 1.38791 * 120.02314 * 0.02562 * 5 4 3 7 7 C 1.38162 * 120.05332 * 179.70251 * 6 5 4 8 8 C 1.38193 * 120.10621 * 0.54605 * 7 6 5 9 9 C 1.50708 * 119.96997 * 179.72091 * 8 7 6 10 10 N 1.46895 * 109.47207 * 259.73129 * 9 8 7 11 11 C 1.46906 * 110.99647 * 180.02562 * 10 9 8 12 12 H 1.09000 * 110.01685 * 325.06263 * 11 10 9 13 13 C 1.53873 * 110.03251 * 86.45479 * 11 10 9 14 14 C 1.54265 * 106.59723 * 119.28193 * 13 11 10 15 15 C 1.54893 * 104.19597 * 23.61063 * 14 13 11 16 16 H 1.09005 * 110.75370 * 80.55760 * 15 14 13 17 17 C 1.50703 * 110.75769 * 203.73881 * 15 14 13 18 18 H 1.07995 * 119.99758 * 118.54464 * 17 15 14 19 19 C 1.37873 * 119.99707 * 298.54894 * 17 15 14 20 20 N 1.31522 * 119.99597 * 179.97438 * 19 17 15 21 21 Si 1.86799 * 120.00559 * 359.97438 * 19 17 15 22 22 H 1.48503 * 109.47293 * 89.99718 * 21 19 17 23 23 H 1.48495 * 109.47315 * 210.00291 * 21 19 17 24 24 H 1.48498 * 109.46870 * 329.99943 * 21 19 17 25 25 C 1.54270 * 110.03070 * 203.62373 * 11 10 9 26 26 C 1.38747 * 120.05474 * 359.45912 * 8 7 6 27 27 O 1.35898 * 120.02660 * 180.24833 * 26 8 7 28 28 C 1.38607 * 120.03313 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.47313 * 299.99582 * 1 2 3 30 30 H 1.08994 * 109.47241 * 60.00215 * 1 2 3 31 31 H 1.09008 * 109.47128 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47008 * 239.99984 * 2 1 3 33 33 H 1.09004 * 109.47278 * 120.00352 * 2 1 3 34 34 H 1.09000 * 109.47208 * 60.00106 * 3 2 1 35 35 H 1.08997 * 109.47401 * 299.99914 * 3 2 1 36 36 H 1.08005 * 119.97578 * 359.95674 * 6 5 4 37 37 H 1.08001 * 119.94416 * 180.27421 * 7 6 5 38 38 H 1.08995 * 109.46484 * 139.72869 * 9 8 7 39 39 H 1.08999 * 109.47033 * 19.73515 * 9 8 7 40 40 H 1.00897 * 111.00420 * 303.95683 * 10 9 8 41 41 H 1.08996 * 110.02961 * 238.56824 * 13 11 10 42 42 H 1.09003 * 110.03167 * 359.97438 * 13 11 10 43 43 H 1.09010 * 110.48228 * 142.28511 * 14 13 11 44 44 H 1.08998 * 110.49010 * 264.93470 * 14 13 11 45 45 H 0.96995 * 119.99816 * 179.97438 * 20 19 17 46 46 H 1.08998 * 110.48293 * 335.77930 * 25 11 10 47 47 H 1.09001 * 110.49024 * 98.42662 * 25 11 10 48 48 H 0.96701 * 114.00579 * 89.99565 * 27 26 8 49 49 H 1.08005 * 120.05023 * 0.05039 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4689 1.4425 0.0006 5 6 4.0860 2.6533 0.0001 6 6 3.3306 3.8177 -0.0003 7 6 3.9573 5.0490 0.0054 8 6 5.3371 5.1246 0.0002 9 6 6.0174 6.4693 0.0002 10 7 6.4535 6.7974 -1.3637 11 6 7.1231 8.1044 -1.4021 12 1 6.6577 8.7832 -0.6874 13 6 8.6181 7.9406 -1.0770 14 6 9.3951 8.4395 -2.3128 15 6 8.4086 9.4031 -3.0182 16 1 8.4130 10.3809 -2.5366 17 6 8.7409 9.5298 -4.4826 18 1 8.0208 9.2264 -5.2280 19 6 9.9644 10.0332 -4.8708 20 7 10.2546 10.1434 -6.1488 21 14 11.2099 10.5587 -3.5815 22 1 12.0753 9.4044 -3.2298 23 1 12.0478 11.6590 -4.1222 24 1 10.4965 11.0306 -2.3676 25 6 7.0436 8.6972 -2.8242 26 6 6.0966 3.9634 0.0006 27 8 7.4536 4.0384 0.0006 28 6 5.4701 2.7266 0.0012 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 2.2520 3.7612 -0.0010 37 1 3.3677 5.9539 0.0095 38 1 6.8836 6.4382 0.6611 39 1 5.3197 7.2295 0.3513 40 1 7.0507 6.0745 -1.7361 41 1 8.8785 8.5405 -0.2050 42 1 8.8468 6.8913 -0.8902 43 1 10.2960 8.9719 -2.0076 44 1 9.6471 7.6052 -2.9674 45 1 11.1152 10.4979 -6.4219 46 1 6.9160 7.9045 -3.5613 47 1 6.2285 9.4177 -2.8922 48 1 7.8463 4.0605 0.8840 49 1 6.0596 1.8216 0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295008412.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:40 Heat of formation + Delta-G solvation = -94.943706 kcal Electronic energy + Delta-G solvation = -26267.317729 eV Core-core repulsion = 22578.969462 eV Total energy + Delta-G solvation = -3688.348267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.40327 -39.92419 -39.29646 -37.16867 -35.89111 -34.79604 -34.12433 -31.74113 -30.87775 -29.89355 -28.66864 -27.50637 -25.70061 -24.69894 -23.98170 -22.52717 -21.90393 -21.22655 -20.85665 -19.82181 -18.73910 -17.94488 -17.41315 -17.24461 -17.17264 -16.64587 -16.48595 -15.82772 -15.36089 -15.31888 -15.14087 -14.98400 -14.79799 -14.62838 -14.31780 -14.01807 -13.79214 -13.38700 -13.15681 -13.03157 -13.01472 -12.90986 -12.71497 -12.48161 -12.40398 -12.10821 -11.99713 -11.86571 -11.65748 -11.50307 -11.47911 -11.44302 -11.38565 -11.11967 -11.01601 -10.68134 -9.78374 -9.30649 -9.00333 -8.27312 -6.30087 0.23136 0.36018 1.32611 1.35946 1.47095 2.12002 2.35476 2.59067 3.08079 3.31650 3.49211 3.77776 3.88433 3.94663 3.95640 3.99149 4.03577 4.07891 4.18918 4.27886 4.30538 4.40765 4.55164 4.56491 4.66250 4.73016 4.74681 4.78378 4.83259 4.90451 4.96528 5.00475 5.01770 5.10837 5.11765 5.17705 5.18025 5.19300 5.33716 5.35189 5.37499 5.53096 5.57520 5.65203 5.67951 5.82652 6.28933 6.35931 6.40117 6.52044 6.76844 6.81661 7.34966 8.90079 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.026802 B = 0.002159 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.432006 B =12966.122237 C =13220.572585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.051 3.949 4 O -0.332 6.332 5 C 0.135 3.865 6 C -0.218 4.218 7 C -0.049 4.049 8 C -0.151 4.151 9 C 0.111 3.889 10 N -0.684 5.684 11 C 0.096 3.904 12 H 0.091 0.909 13 C -0.139 4.139 14 C -0.127 4.127 15 C 0.004 3.996 16 H 0.032 0.968 17 C -0.513 4.513 18 H 0.027 0.973 19 C 0.007 3.993 20 N -0.955 5.955 21 Si 0.950 3.050 22 H -0.269 1.269 23 H -0.296 1.296 24 H -0.243 1.243 25 C -0.088 4.088 26 C 0.149 3.851 27 O -0.503 6.503 28 C -0.198 4.198 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.340 0.660 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.041 0.959 44 H 0.044 0.956 45 H 0.264 0.736 46 H 0.044 0.956 47 H 0.055 0.945 48 H 0.409 0.591 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.344 -18.043 22.212 33.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.023 4.023 4 O -0.246 6.246 5 C 0.090 3.910 6 C -0.236 4.236 7 C -0.068 4.068 8 C -0.152 4.152 9 C -0.017 4.017 10 N -0.314 5.314 11 C -0.014 4.014 12 H 0.109 0.891 13 C -0.178 4.178 14 C -0.165 4.165 15 C -0.015 4.015 16 H 0.050 0.950 17 C -0.551 4.551 18 H 0.046 0.954 19 C -0.189 4.189 20 N -0.596 5.596 21 Si 0.776 3.224 22 H -0.195 1.195 23 H -0.224 1.224 24 H -0.166 1.166 25 C -0.126 4.126 26 C 0.103 3.897 27 O -0.316 6.316 28 C -0.218 4.218 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.168 0.832 37 H 0.165 0.835 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.159 0.841 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.268 0.732 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.836 -17.949 21.326 33.092 hybrid contribution 1.770 0.136 0.383 1.816 sum -16.066 -17.813 21.709 32.353 Atomic orbital electron populations 1.21685 0.92812 1.03201 1.02743 1.21505 0.97161 0.93929 1.03390 1.23147 0.76794 0.99970 1.02432 1.86027 1.23136 1.26943 1.88499 1.18852 0.91756 0.84777 0.95652 1.21466 1.01184 0.91624 1.09375 1.20985 0.93197 0.98034 0.94563 1.20157 0.94353 0.94580 1.06125 1.20698 0.98375 0.92895 0.89702 1.60698 1.45779 1.03773 1.21164 1.22141 0.91700 0.90827 0.96758 0.89121 1.22826 0.96332 1.01153 0.97498 1.22618 0.97993 0.99115 0.96767 1.20088 0.93644 0.94575 0.93201 0.94957 1.21370 1.00571 1.40906 0.92264 0.95427 1.25937 1.00487 0.95337 0.97150 1.70077 1.23824 1.48360 1.17311 0.85806 0.78790 0.77877 0.79942 1.19451 1.22385 1.16638 1.22151 0.96451 0.98241 0.95793 1.18026 0.83205 0.90940 0.97492 1.84808 1.15607 1.96023 1.35160 1.20678 0.92433 0.98462 1.10185 0.91655 0.92040 0.91038 0.91442 0.90956 0.90649 0.91354 0.83224 0.83534 0.93703 0.89494 0.84141 0.90703 0.91232 0.94013 0.93721 0.92724 0.93725 0.92664 0.73185 0.84785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 71.98 0.71 -0.25 16 2 C -0.12 -1.25 6.30 30.59 0.19 -1.06 16 3 C 0.05 0.65 4.74 71.98 0.34 0.99 16 4 O -0.33 -6.57 10.13 -92.43 -0.94 -7.50 16 5 C 0.14 2.84 6.68 22.49 0.15 2.99 16 6 C -0.22 -3.93 9.04 22.38 0.20 -3.73 16 7 C -0.05 -0.94 9.66 22.24 0.21 -0.72 16 8 C -0.15 -3.24 5.41 -19.75 -0.11 -3.35 16 9 C 0.11 2.42 5.30 85.56 0.45 2.87 16 10 N -0.68 -19.47 6.19 -491.82 -3.04 -22.51 16 11 C 0.10 2.97 3.23 45.64 0.15 3.12 16 12 H 0.09 2.47 7.83 -2.39 -0.02 2.45 16 13 C -0.14 -4.36 6.37 31.32 0.20 -4.16 16 14 C -0.13 -5.31 5.08 31.67 0.16 -5.15 16 15 C 0.00 0.19 2.30 -10.25 -0.02 0.17 16 16 H 0.03 1.51 7.37 -2.38 -0.02 1.50 16 17 C -0.51 -30.38 9.12 25.60 0.23 -30.14 16 18 H 0.03 1.82 8.03 -2.91 -0.02 1.80 16 19 C 0.01 0.42 5.46 84.65 0.46 0.88 16 20 N -0.95 -61.71 13.96 21.45 0.30 -61.41 16 21 Si 0.95 45.94 24.46 68.60 1.68 47.61 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 24 H -0.24 -10.73 6.48 99.48 0.64 -10.08 16 25 C -0.09 -3.57 5.95 31.67 0.19 -3.38 16 26 C 0.15 3.28 6.67 22.49 0.15 3.43 16 27 O -0.50 -10.24 12.67 -92.41 -1.17 -11.41 16 28 C -0.20 -4.41 9.92 22.46 0.22 -4.18 16 29 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.08 0.75 7.66 -2.39 -0.02 0.73 16 35 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 36 H 0.15 1.93 6.29 -2.91 -0.02 1.91 16 37 H 0.15 2.24 8.03 -2.91 -0.02 2.22 16 38 H 0.04 0.89 7.80 -2.39 -0.02 0.87 16 39 H 0.09 1.68 7.92 -2.39 -0.02 1.66 16 40 H 0.34 10.62 8.12 -89.70 -0.73 9.90 16 41 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.07 2.01 7.59 -2.39 -0.02 1.99 16 43 H 0.04 1.73 4.91 -2.38 -0.01 1.72 16 44 H 0.04 2.02 8.04 -2.39 -0.02 2.00 16 45 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 46 H 0.04 1.99 7.95 -2.39 -0.02 1.97 16 47 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.41 4.41 9.06 -74.06 -0.67 3.74 16 49 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -72.55 386.87 0.21 -72.34 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: -0.51 Total: 24.57 kcal Atomic # 6 Polarization: -45.58 SS G_CDS: 3.90 Total: -41.68 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -2.75 Total: -83.93 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -2.11 Total: -18.92 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.68 Total: 47.61 kcal Total: -72.55 0.21 -72.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295008412.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.604 kcal (2) G-P(sol) polarization free energy of solvation -72.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds