Wall clock time and date at job start Tue Mar 31 2020 14:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47098 * 2 1 4 4 C 1.53001 * 109.46831 * 239.99596 * 2 1 3 5 5 C 1.52996 * 109.47522 * 300.00386 * 4 2 1 6 6 C 1.53006 * 109.46971 * 300.00139 * 5 4 2 7 7 C 1.52993 * 109.46968 * 59.99814 * 6 5 4 8 8 H 1.08995 * 109.47473 * 60.00202 * 7 6 5 9 9 C 1.53006 * 109.46968 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.47074 * 295.00238 * 9 7 6 11 11 O 1.21280 * 120.00033 * 359.97438 * 10 9 7 12 12 N 1.34776 * 120.00293 * 180.02562 * 10 9 7 13 13 C 1.46495 * 120.00277 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.46830 * 269.99647 * 13 12 10 15 15 H 1.07995 * 120.00493 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99838 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99893 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99952 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47323 * 89.99865 * 18 16 14 20 20 H 1.48507 * 109.46978 * 209.99910 * 18 16 14 21 21 H 1.48499 * 109.47322 * 329.99782 * 18 16 14 22 22 C 1.46508 * 119.99615 * 359.97438 * 12 10 9 23 23 C 1.50700 * 109.46872 * 269.99896 * 22 12 10 24 24 C 1.34520 * 125.78639 * 90.00743 * 23 22 12 25 25 C 1.41381 * 106.83580 * 180.22245 * 24 23 22 26 26 C 1.34513 * 106.84363 * 359.57150 * 25 24 23 27 27 O 1.34302 * 125.79150 * 269.95784 * 23 22 12 28 28 C 1.52996 * 109.47427 * 299.99907 * 7 6 5 29 29 H 1.08999 * 109.47006 * 300.00359 * 1 2 3 30 30 H 1.08998 * 109.46726 * 59.99782 * 1 2 3 31 31 H 1.08996 * 109.47551 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46958 * 60.00763 * 4 2 1 33 33 H 1.09007 * 109.46912 * 180.02562 * 4 2 1 34 34 H 1.08995 * 109.47034 * 59.99670 * 5 4 2 35 35 H 1.08999 * 109.47398 * 180.02562 * 5 4 2 36 36 H 1.09007 * 109.46957 * 299.99975 * 6 5 4 37 37 H 1.08998 * 109.46733 * 180.02562 * 6 5 4 38 38 H 1.09001 * 109.47131 * 175.00045 * 9 7 6 39 39 H 1.08995 * 109.47184 * 55.00059 * 9 7 6 40 40 H 1.08998 * 109.47237 * 29.99827 * 13 12 10 41 41 H 1.09003 * 109.47011 * 149.99883 * 13 12 10 42 42 H 0.97002 * 119.99800 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.46955 * 149.99844 * 22 12 10 44 44 H 1.09001 * 109.47163 * 30.00080 * 22 12 10 45 45 H 1.08002 * 126.57789 * 359.95308 * 24 23 22 46 46 H 1.08009 * 126.57222 * 179.73218 * 25 24 23 47 47 H 1.07998 * 125.78715 * 180.12081 * 26 25 24 48 48 H 1.08999 * 109.47398 * 180.02562 * 28 7 6 49 49 H 1.08998 * 109.47247 * 300.00090 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.5299 -2.1638 -1.2492 6 6 2.0399 -2.8851 0.0001 7 6 1.5299 -2.1637 1.2492 8 1 0.4399 -2.1637 1.2493 9 6 2.0393 -2.8854 2.4985 10 6 1.4379 -4.2657 2.5617 11 8 0.6764 -4.6357 1.6933 12 7 1.7454 -5.0887 3.5837 13 6 1.1611 -6.4307 3.6448 14 6 -0.1371 -6.3791 4.4083 15 1 -0.4914 -5.4406 4.8084 16 6 -0.8727 -7.5301 4.5960 17 7 -2.0054 -7.4851 5.2627 18 14 -0.2597 -9.1535 3.9046 19 1 0.5936 -9.8307 4.9138 20 1 -1.4194 -10.0206 3.5750 21 1 0.5340 -8.8999 2.6754 22 6 2.6648 -4.6416 4.6330 23 6 4.0773 -5.0010 4.2498 24 6 4.9225 -4.2269 3.5456 25 6 6.1286 -4.9526 3.4132 26 6 5.9516 -6.1227 4.0526 27 8 4.7060 -6.1480 4.5542 28 6 2.0399 -0.7213 1.2492 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7218 -1.2490 34 1 0.4399 -2.1637 -1.2492 35 1 1.8935 -2.6778 -2.1390 36 1 3.1299 -2.8851 0.0001 37 1 1.6768 -3.9128 -0.0002 38 1 1.7510 -2.3224 3.3863 39 1 3.1256 -2.9640 2.4551 40 1 0.9739 -6.7919 2.6336 41 1 1.8528 -7.1055 4.1493 42 1 -2.5231 -8.2948 5.3945 43 1 2.4081 -5.1296 5.5733 44 1 2.5840 -3.5610 4.7507 45 1 4.7174 -3.2420 3.1526 46 1 7.0217 -4.6283 2.8997 47 1 6.6849 -6.9105 4.1426 48 1 1.6770 -0.2075 2.1394 49 1 3.1299 -0.7213 1.2493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330520825.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:25 Heat of formation + Delta-G solvation = -42.457448 kcal Electronic energy + Delta-G solvation = -28153.677881 eV Core-core repulsion = 24467.605589 eV Total energy + Delta-G solvation = -3686.072292 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.42540 -39.85691 -38.43060 -35.32555 -33.31252 -32.70908 -32.49536 -31.40858 -30.35895 -28.51813 -26.85847 -26.64601 -25.40372 -22.63370 -22.19817 -21.61575 -20.95904 -20.62479 -18.62775 -18.45816 -17.40261 -16.85991 -16.39165 -15.91774 -15.46425 -15.32338 -15.01310 -14.60802 -14.31573 -14.09638 -13.85448 -13.69096 -13.18071 -12.92441 -12.73679 -12.64985 -12.56764 -12.52888 -12.29395 -12.03383 -11.74184 -11.60118 -11.51030 -11.33994 -11.29046 -10.99436 -10.92082 -10.73786 -10.53708 -10.19391 -10.11665 -9.92064 -9.87296 -9.80943 -9.54089 -8.91098 -8.58829 -8.41773 -7.83833 -6.08618 -4.07273 1.81594 2.67572 3.06781 3.28548 3.36071 3.40529 3.41424 3.86169 4.40796 4.69767 4.72560 4.74856 4.83443 5.03071 5.06829 5.10437 5.14717 5.25282 5.28788 5.35245 5.38554 5.42953 5.55289 5.64972 5.66133 5.68259 5.73403 5.80656 5.82365 5.87785 5.91828 5.99481 6.01410 6.04204 6.07409 6.20165 6.29436 6.32368 6.35445 6.42003 6.58159 6.68207 6.69688 6.71457 6.98564 7.21433 7.32757 7.60912 8.17995 8.46356 8.91790 8.97053 9.52013 11.04615 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010009 B = 0.004705 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.914541 B = 5950.299925 C = 7869.151813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.089 4.089 3 H 0.064 0.936 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.071 4.071 8 H 0.083 0.917 9 C -0.145 4.145 10 C 0.512 3.488 11 O -0.529 6.529 12 N -0.591 5.591 13 C 0.216 3.784 14 C -0.528 4.528 15 H 0.076 0.924 16 C 0.074 3.926 17 N -0.897 5.897 18 Si 0.872 3.128 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.264 1.264 22 C 0.186 3.814 23 C -0.015 4.015 24 C -0.212 4.212 25 C -0.216 4.216 26 C -0.045 4.045 27 O -0.168 6.168 28 C -0.109 4.109 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.041 0.959 41 H 0.025 0.975 42 H 0.264 0.736 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.147 0.853 46 H 0.144 0.856 47 H 0.198 0.802 48 H 0.061 0.939 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.027 12.887 -6.668 20.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.107 4.107 3 H 0.082 0.918 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.090 4.090 8 H 0.101 0.899 9 C -0.185 4.185 10 C 0.300 3.700 11 O -0.405 6.405 12 N -0.322 5.322 13 C 0.096 3.904 14 C -0.566 4.566 15 H 0.094 0.906 16 C -0.128 4.128 17 N -0.535 5.535 18 Si 0.699 3.301 19 H -0.201 1.201 20 H -0.209 1.209 21 H -0.189 1.189 22 C 0.062 3.938 23 C -0.067 4.067 24 C -0.232 4.232 25 C -0.235 4.235 26 C -0.114 4.114 27 O -0.063 6.063 28 C -0.147 4.147 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.059 0.941 41 H 0.043 0.957 42 H 0.074 0.926 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.165 0.835 46 H 0.162 0.838 47 H 0.215 0.785 48 H 0.079 0.921 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.294 12.309 -6.903 20.086 hybrid contribution 0.557 -0.839 -0.293 1.049 sum 14.850 11.469 -7.195 20.096 Atomic orbital electron populations 1.21966 0.95310 1.02688 1.01111 1.21054 0.96043 0.98543 0.95095 0.91760 1.21575 1.00177 0.96174 0.97175 1.21540 1.01226 0.94946 0.97913 1.21688 0.99448 1.01092 0.93362 1.20923 1.01585 0.93144 0.93312 0.89919 1.21966 1.01830 0.94470 1.00219 1.20436 0.81503 0.86617 0.81434 1.90635 1.35498 1.76237 1.38135 1.48005 1.43861 1.17345 1.22984 1.19689 0.93920 0.78419 0.98418 1.21300 1.04189 0.96692 1.34439 0.90628 1.24822 0.94609 0.98813 0.94574 1.69890 1.13963 1.28776 1.40899 0.86897 0.78866 0.84098 0.80221 1.20053 1.20930 1.18909 1.19902 0.80173 1.00569 0.93179 1.23355 0.96469 0.85015 1.01888 1.21650 0.94195 1.02160 1.05183 1.21771 0.99998 0.95841 1.05930 1.24012 0.85733 1.00512 1.01097 1.84096 1.23992 1.36913 1.61260 1.21628 1.00234 0.95395 0.97416 0.92911 0.93192 0.91467 0.92557 0.92376 0.91621 0.92607 0.93114 0.89746 0.89385 0.89352 0.94087 0.95687 0.92565 0.87910 0.87828 0.83514 0.83784 0.78491 0.92067 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.50 37.16 0.32 -1.28 16 2 C -0.09 -0.88 3.20 -90.62 -0.29 -1.17 16 3 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.11 -1.13 5.45 -26.73 -0.15 -1.28 16 5 C -0.12 -1.42 5.65 -26.73 -0.15 -1.57 16 6 C -0.12 -1.64 4.94 -26.73 -0.13 -1.77 16 7 C -0.07 -0.94 1.56 -90.62 -0.14 -1.08 16 8 H 0.08 1.28 6.24 -51.93 -0.32 0.95 16 9 C -0.14 -2.02 3.73 -27.88 -0.10 -2.12 16 10 C 0.51 10.04 7.39 -10.99 -0.08 9.96 16 11 O -0.53 -12.44 13.55 5.56 0.08 -12.36 16 12 N -0.59 -11.95 2.44 -176.43 -0.43 -12.38 16 13 C 0.22 5.32 4.23 -5.20 -0.02 5.29 16 14 C -0.53 -15.05 9.94 -34.44 -0.34 -15.40 16 15 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 16 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 17 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 18 Si 0.87 21.82 27.47 -169.99 -4.67 17.15 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 22 C 0.19 2.94 5.74 -5.19 -0.03 2.92 16 23 C -0.02 -0.23 6.90 -35.62 -0.25 -0.47 16 24 C -0.21 -2.75 9.98 -39.70 -0.40 -3.15 16 25 C -0.22 -2.57 10.91 -39.70 -0.43 -3.01 16 26 C -0.05 -0.56 12.09 29.42 0.36 -0.20 16 27 O -0.17 -2.65 10.65 5.71 0.06 -2.59 16 28 C -0.11 -1.14 4.73 -26.73 -0.13 -1.26 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.81 4.81 -51.93 -0.25 0.56 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.07 0.83 6.43 -51.93 -0.33 0.50 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 37 H 0.08 1.46 5.95 -51.93 -0.31 1.15 16 38 H 0.09 1.07 7.40 -51.93 -0.38 0.69 16 39 H 0.09 1.07 5.12 -51.93 -0.27 0.81 16 40 H 0.04 1.10 6.48 -51.93 -0.34 0.76 16 41 H 0.03 0.60 7.50 -51.93 -0.39 0.21 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.10 1.68 8.07 -51.93 -0.42 1.26 16 44 H 0.10 1.28 6.44 -51.93 -0.33 0.95 16 45 H 0.15 1.60 6.17 -52.49 -0.32 1.28 16 46 H 0.14 1.34 8.06 -52.48 -0.42 0.91 16 47 H 0.20 1.65 8.06 -52.49 -0.42 1.23 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 375.60 15.07 5.66 5.66 Total: -1.00 -33.67 375.60 -8.51 -42.17 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.91 Total: 2.70 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -2.07 Total: -13.51 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.34 Total: -39.23 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.14 Total: -14.95 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.67 -8.51 -42.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330520825.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.284 kcal (2) G-P(sol) polarization free energy of solvation -33.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds