Wall clock time and date at job start Tue Mar 31 2020 14:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47098 * 2 1 4 4 C 1.53001 * 109.46831 * 239.99596 * 2 1 3 5 5 C 1.52996 * 109.47522 * 300.00386 * 4 2 1 6 6 C 1.53006 * 109.46971 * 300.00139 * 5 4 2 7 7 C 1.52993 * 109.46968 * 59.99814 * 6 5 4 8 8 H 1.08995 * 109.47473 * 60.00202 * 7 6 5 9 9 C 1.53006 * 109.46968 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.47074 * 295.00238 * 9 7 6 11 11 O 1.21280 * 120.00033 * 359.97438 * 10 9 7 12 12 N 1.34776 * 120.00293 * 180.02562 * 10 9 7 13 13 C 1.46495 * 120.00277 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.46830 * 269.99647 * 13 12 10 15 15 H 1.07995 * 120.00493 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99838 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99893 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99952 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47323 * 89.99865 * 18 16 14 20 20 H 1.48507 * 109.46978 * 209.99910 * 18 16 14 21 21 H 1.48499 * 109.47322 * 329.99782 * 18 16 14 22 22 C 1.46508 * 119.99615 * 359.97438 * 12 10 9 23 23 C 1.50700 * 109.46872 * 269.99896 * 22 12 10 24 24 C 1.34520 * 125.78639 * 90.00743 * 23 22 12 25 25 C 1.41381 * 106.83580 * 180.22245 * 24 23 22 26 26 C 1.34513 * 106.84363 * 359.57150 * 25 24 23 27 27 O 1.34302 * 125.79150 * 269.95784 * 23 22 12 28 28 C 1.52996 * 109.47427 * 299.99907 * 7 6 5 29 29 H 1.08999 * 109.47006 * 300.00359 * 1 2 3 30 30 H 1.08998 * 109.46726 * 59.99782 * 1 2 3 31 31 H 1.08996 * 109.47551 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46958 * 60.00763 * 4 2 1 33 33 H 1.09007 * 109.46912 * 180.02562 * 4 2 1 34 34 H 1.08995 * 109.47034 * 59.99670 * 5 4 2 35 35 H 1.08999 * 109.47398 * 180.02562 * 5 4 2 36 36 H 1.09007 * 109.46957 * 299.99975 * 6 5 4 37 37 H 1.08998 * 109.46733 * 180.02562 * 6 5 4 38 38 H 1.09001 * 109.47131 * 175.00045 * 9 7 6 39 39 H 1.08995 * 109.47184 * 55.00059 * 9 7 6 40 40 H 1.08998 * 109.47237 * 29.99827 * 13 12 10 41 41 H 1.09003 * 109.47011 * 149.99883 * 13 12 10 42 42 H 0.97002 * 119.99800 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.46955 * 149.99844 * 22 12 10 44 44 H 1.09001 * 109.47163 * 30.00080 * 22 12 10 45 45 H 1.08002 * 126.57789 * 359.95308 * 24 23 22 46 46 H 1.08009 * 126.57222 * 179.73218 * 25 24 23 47 47 H 1.07998 * 125.78715 * 180.12081 * 26 25 24 48 48 H 1.08999 * 109.47398 * 180.02562 * 28 7 6 49 49 H 1.08998 * 109.47247 * 300.00090 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.5299 -2.1638 -1.2492 6 6 2.0399 -2.8851 0.0001 7 6 1.5299 -2.1637 1.2492 8 1 0.4399 -2.1637 1.2493 9 6 2.0393 -2.8854 2.4985 10 6 1.4379 -4.2657 2.5617 11 8 0.6764 -4.6357 1.6933 12 7 1.7454 -5.0887 3.5837 13 6 1.1611 -6.4307 3.6448 14 6 -0.1371 -6.3791 4.4083 15 1 -0.4914 -5.4406 4.8084 16 6 -0.8727 -7.5301 4.5960 17 7 -2.0054 -7.4851 5.2627 18 14 -0.2597 -9.1535 3.9046 19 1 0.5936 -9.8307 4.9138 20 1 -1.4194 -10.0206 3.5750 21 1 0.5340 -8.8999 2.6754 22 6 2.6648 -4.6416 4.6330 23 6 4.0773 -5.0010 4.2498 24 6 4.9225 -4.2269 3.5456 25 6 6.1286 -4.9526 3.4132 26 6 5.9516 -6.1227 4.0526 27 8 4.7060 -6.1480 4.5542 28 6 2.0399 -0.7213 1.2492 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7218 -1.2490 34 1 0.4399 -2.1637 -1.2492 35 1 1.8935 -2.6778 -2.1390 36 1 3.1299 -2.8851 0.0001 37 1 1.6768 -3.9128 -0.0002 38 1 1.7510 -2.3224 3.3863 39 1 3.1256 -2.9640 2.4551 40 1 0.9739 -6.7919 2.6336 41 1 1.8528 -7.1055 4.1493 42 1 -2.5231 -8.2948 5.3945 43 1 2.4081 -5.1296 5.5733 44 1 2.5840 -3.5610 4.7507 45 1 4.7174 -3.2420 3.1526 46 1 7.0217 -4.6283 2.8997 47 1 6.6849 -6.9105 4.1426 48 1 1.6770 -0.2075 2.1394 49 1 3.1299 -0.7213 1.2493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330520825.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:24 Heat of formation + Delta-G solvation = -61.927197 kcal Electronic energy + Delta-G solvation = -28154.522152 eV Core-core repulsion = 24467.605589 eV Total energy + Delta-G solvation = -3686.916563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.44858 -41.15639 -39.60654 -36.92118 -34.96748 -34.09725 -33.73491 -32.34563 -31.74369 -30.12267 -28.08421 -27.55219 -26.71071 -24.41555 -23.14147 -22.64073 -22.16502 -21.68915 -19.91449 -19.50314 -19.18653 -18.34862 -17.75774 -17.33328 -16.67583 -16.45069 -16.31622 -16.11828 -15.45991 -15.31268 -15.10887 -14.73646 -14.54546 -14.33815 -14.10175 -13.83343 -13.73985 -13.58834 -13.54405 -13.47053 -13.08403 -12.83212 -12.79713 -12.56364 -12.48421 -12.33838 -12.23752 -12.08883 -11.81413 -11.78687 -11.65728 -11.12539 -10.94912 -10.85270 -10.80730 -10.77983 -10.39149 -9.63202 -9.35598 -8.36839 -6.40904 0.77051 1.27360 1.30863 1.41589 1.72008 1.77773 2.19994 2.27444 2.43225 2.97055 3.65754 3.75246 3.81157 3.85344 3.97457 4.07377 4.15362 4.22368 4.31698 4.36098 4.43655 4.52462 4.55325 4.59266 4.64317 4.69783 4.76600 4.76786 4.87961 4.91023 4.93908 4.97562 5.06442 5.07210 5.11670 5.17035 5.21124 5.23709 5.37250 5.40820 5.42686 5.46686 5.51539 5.54950 5.67059 5.68380 5.72635 6.20543 6.27859 6.59893 6.64909 7.20107 7.42013 8.79823 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010009 B = 0.004705 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.914541 B = 5950.299925 C = 7869.151813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.088 4.088 3 H 0.087 0.913 4 C -0.108 4.108 5 C -0.118 4.118 6 C -0.116 4.116 7 C -0.069 4.069 8 H 0.051 0.949 9 C -0.132 4.132 10 C 0.501 3.499 11 O -0.580 6.580 12 N -0.599 5.599 13 C 0.230 3.770 14 C -0.532 4.532 15 H 0.036 0.964 16 C 0.017 3.983 17 N -0.941 5.941 18 Si 0.940 3.060 19 H -0.254 1.254 20 H -0.278 1.278 21 H -0.263 1.263 22 C 0.185 3.815 23 C -0.050 4.050 24 C -0.197 4.197 25 C -0.221 4.221 26 C -0.048 4.048 27 O -0.199 6.199 28 C -0.103 4.103 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.040 0.960 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.016 0.984 41 H 0.034 0.966 42 H 0.269 0.731 43 H 0.087 0.913 44 H 0.140 0.860 45 H 0.171 0.829 46 H 0.174 0.826 47 H 0.231 0.769 48 H 0.072 0.928 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.638 14.529 -7.349 24.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.106 4.106 3 H 0.106 0.894 4 C -0.145 4.145 5 C -0.156 4.156 6 C -0.153 4.153 7 C -0.088 4.088 8 H 0.069 0.931 9 C -0.171 4.171 10 C 0.292 3.708 11 O -0.460 6.460 12 N -0.330 5.330 13 C 0.107 3.893 14 C -0.571 4.571 15 H 0.055 0.945 16 C -0.182 4.182 17 N -0.581 5.581 18 Si 0.763 3.237 19 H -0.178 1.178 20 H -0.203 1.203 21 H -0.187 1.187 22 C 0.063 3.937 23 C -0.101 4.101 24 C -0.217 4.217 25 C -0.240 4.240 26 C -0.115 4.115 27 O -0.096 6.096 28 C -0.140 4.140 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.034 0.966 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.157 0.843 45 H 0.188 0.812 46 H 0.192 0.808 47 H 0.248 0.752 48 H 0.090 0.910 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 17.941 13.985 -7.558 23.970 hybrid contribution -0.566 -1.323 -0.070 1.441 sum 17.374 12.662 -7.628 22.812 Atomic orbital electron populations 1.21963 0.96331 1.01178 1.01691 1.21091 0.95173 0.99650 0.94695 0.89440 1.21549 1.00922 0.94240 0.97819 1.21519 1.00208 0.96720 0.97135 1.21607 1.00151 0.98911 0.94672 1.20896 0.99844 0.95337 0.92700 0.93052 1.22010 1.02877 0.90588 1.01627 1.21534 0.80716 0.88343 0.80237 1.90615 1.37822 1.77529 1.40007 1.48080 1.44588 1.15875 1.24467 1.19212 0.92515 0.81541 0.96021 1.21510 1.05925 0.95231 1.34400 0.94538 1.25732 0.94702 1.02897 0.94848 1.70028 1.15444 1.30126 1.42510 0.85823 0.78706 0.79279 0.79861 1.17795 1.20303 1.18721 1.20077 0.80208 1.02407 0.91051 1.23138 0.96385 0.86010 1.04579 1.22001 0.93942 1.02656 1.03102 1.22180 1.00612 0.95406 1.05802 1.24836 0.84954 1.01770 0.99971 1.84061 1.25589 1.37581 1.62338 1.21605 1.01416 0.92731 0.98252 0.92642 0.92341 0.94033 0.91504 0.90959 0.93396 0.92371 0.91540 0.94143 0.87027 0.86617 0.96635 0.94840 0.92222 0.89447 0.84270 0.81177 0.80823 0.75233 0.90981 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.50 71.98 0.61 -2.44 16 2 C -0.09 -1.47 3.20 -10.79 -0.03 -1.50 16 3 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 4 C -0.11 -1.86 5.45 30.59 0.17 -1.70 16 5 C -0.12 -2.78 5.65 30.59 0.17 -2.61 16 6 C -0.12 -3.17 4.94 30.59 0.15 -3.02 16 7 C -0.07 -1.77 1.56 -10.80 -0.02 -1.79 16 8 H 0.05 1.65 6.24 -2.39 -0.01 1.64 16 9 C -0.13 -3.47 3.73 29.85 0.11 -3.36 16 10 C 0.50 20.15 7.39 87.66 0.65 20.80 16 11 O -0.58 -28.98 13.55 -3.03 -0.04 -29.02 16 12 N -0.60 -24.85 2.44 -830.49 -2.03 -26.87 16 13 C 0.23 11.73 4.23 85.63 0.36 12.09 16 14 C -0.53 -31.86 9.94 25.60 0.25 -31.60 16 15 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 16 C 0.02 1.00 5.47 84.66 0.46 1.47 16 17 N -0.94 -60.06 13.96 21.45 0.30 -59.76 16 18 Si 0.94 46.10 27.47 68.60 1.88 47.98 16 19 H -0.25 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 21 H -0.26 -12.72 6.54 99.48 0.65 -12.07 16 22 C 0.19 5.79 5.74 85.63 0.49 6.28 16 23 C -0.05 -1.44 6.90 24.83 0.17 -1.27 16 24 C -0.20 -4.47 9.98 22.19 0.22 -4.25 16 25 C -0.22 -4.44 10.91 22.19 0.24 -4.19 16 26 C -0.05 -1.05 12.09 66.97 0.81 -0.24 16 27 O -0.20 -6.06 10.65 -2.47 -0.03 -6.09 16 28 C -0.10 -1.79 4.73 30.59 0.14 -1.65 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.04 1.03 4.81 -2.39 -0.01 1.02 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.05 1.28 6.43 -2.39 -0.02 1.26 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.04 1.47 5.95 -2.39 -0.01 1.45 16 38 H 0.11 2.44 7.40 -2.39 -0.02 2.42 16 39 H 0.12 2.41 5.12 -2.39 -0.01 2.40 16 40 H 0.02 0.87 6.48 -2.39 -0.02 0.86 16 41 H 0.03 1.64 7.50 -2.39 -0.02 1.63 16 42 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 43 H 0.09 2.94 8.07 -2.39 -0.02 2.92 16 44 H 0.14 3.19 6.44 -2.39 -0.02 3.18 16 45 H 0.17 2.89 6.17 -2.91 -0.02 2.87 16 46 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 47 H 0.23 3.07 8.06 -2.91 -0.02 3.05 16 48 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -79.25 375.60 5.94 -73.31 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.88 Total: 19.43 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 4.97 Total: -18.98 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -1.73 Total: -86.64 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -0.07 Total: -35.11 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.88 Total: 47.98 kcal Total: -79.25 5.94 -73.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330520825.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.381 kcal (2) G-P(sol) polarization free energy of solvation -79.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds