Wall clock time and date at job start Tue Mar 31 2020 14:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47269 * 299.99806 * 5 4 2 7 7 C 1.53005 * 109.46542 * 59.99862 * 6 5 4 8 8 H 1.09001 * 109.46812 * 60.00243 * 7 6 5 9 9 C 1.52996 * 109.47056 * 179.97438 * 7 6 5 10 10 C 1.50702 * 109.47417 * 295.00407 * 9 7 6 11 11 O 1.21286 * 119.99909 * 359.97438 * 10 9 7 12 12 N 1.34775 * 120.00459 * 179.97438 * 10 9 7 13 13 C 1.46493 * 120.00236 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47166 * 89.99987 * 13 12 10 15 15 H 1.07999 * 120.00119 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99787 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00342 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99851 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.46536 * 60.00428 * 18 16 14 20 20 H 1.48499 * 109.47129 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47291 * 300.00566 * 18 16 14 22 22 C 1.46501 * 119.99764 * 359.97438 * 12 10 9 23 23 C 1.50699 * 109.47159 * 89.99952 * 22 12 10 24 24 C 1.34517 * 125.79013 * 89.99518 * 23 22 12 25 25 C 1.41382 * 106.83913 * 180.02562 * 24 23 22 26 26 C 1.34507 * 106.84632 * 0.02562 * 25 24 23 27 27 O 1.34303 * 125.79040 * 269.69431 * 23 22 12 28 28 C 1.52997 * 109.47452 * 300.00026 * 7 6 5 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 33 33 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 34 34 H 1.09001 * 109.47289 * 60.00300 * 5 4 2 35 35 H 1.09004 * 109.47261 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.47192 * 179.97438 * 6 5 4 37 37 H 1.08998 * 109.46876 * 300.00443 * 6 5 4 38 38 H 1.09008 * 109.47057 * 54.99968 * 9 7 6 39 39 H 1.08997 * 109.47395 * 174.99794 * 9 7 6 40 40 H 1.09004 * 109.47211 * 210.00272 * 13 12 10 41 41 H 1.08996 * 109.47247 * 329.99998 * 13 12 10 42 42 H 0.97001 * 120.00194 * 179.97438 * 17 16 14 43 43 H 1.08997 * 109.46949 * 209.99744 * 22 12 10 44 44 H 1.09004 * 109.46913 * 330.00281 * 22 12 10 45 45 H 1.07997 * 126.57846 * 359.97438 * 24 23 22 46 46 H 1.08002 * 126.57735 * 180.02562 * 25 24 23 47 47 H 1.08005 * 125.79476 * 180.02562 * 26 25 24 48 48 H 1.09001 * 109.46832 * 300.00199 * 28 7 6 49 49 H 1.08993 * 109.47194 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5700 -0.7218 1.2488 6 6 4.0795 -1.4434 -0.0005 7 6 3.5694 -0.7221 -1.2497 8 1 3.9332 0.3054 -1.2498 9 6 4.0794 -1.4432 -2.4990 10 6 5.5813 -1.3370 -2.5625 11 8 6.1845 -0.7425 -1.6943 12 7 6.2544 -1.9025 -3.5841 13 6 7.7143 -1.7987 -3.6461 14 6 8.3322 -2.9677 -2.9232 15 1 7.7006 -3.7137 -2.4639 16 6 9.7040 -3.0855 -2.8491 17 7 10.4732 -2.1775 -3.4088 18 14 10.4699 -4.5343 -1.9525 19 1 10.0353 -5.8003 -2.5957 20 1 11.9498 -4.4291 -2.0155 21 1 10.0334 -4.5249 -0.5331 22 6 5.5259 -2.6211 -4.6325 23 6 5.1589 -1.6628 -5.7362 24 6 5.9097 -1.3822 -6.8164 25 6 5.1877 -0.4390 -7.5833 26 6 4.0391 -0.1992 -6.9256 27 8 4.0241 -0.9483 -5.8109 28 6 2.0395 -0.7215 -1.2494 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.6767 -0.2074 2.1392 33 1 1.6768 -1.7489 1.2491 34 1 3.9338 0.3057 1.2487 35 1 3.9334 -1.2361 2.1386 36 1 5.1695 -1.4434 -0.0009 37 1 3.7158 -2.4709 -0.0002 38 1 3.7911 -2.4936 -2.4553 39 1 3.6447 -0.9838 -3.3866 40 1 8.0351 -1.8049 -4.6878 41 1 8.0329 -0.8697 -3.1734 42 1 11.4382 -2.2602 -3.3564 43 1 6.1563 -3.4141 -5.0347 44 1 4.6190 -3.0557 -4.2122 45 1 6.8785 -1.7971 -7.0522 46 1 5.4987 0.0039 -8.5179 47 1 3.2586 0.4764 -7.2431 48 1 1.6758 -1.7491 -1.2492 49 1 1.6761 -0.2073 -2.1390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330520826.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:28 Heat of formation + Delta-G solvation = -53.840822 kcal Electronic energy + Delta-G solvation = -27850.565235 eV Core-core repulsion = 24163.999323 eV Total energy + Delta-G solvation = -3686.565912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.31604 -39.60681 -38.16849 -35.21877 -33.25063 -32.79009 -32.60839 -31.62912 -30.12128 -28.22640 -26.56367 -26.18611 -25.27649 -22.90557 -21.81690 -21.47607 -20.67699 -20.39994 -19.62741 -18.37530 -17.23943 -16.50888 -16.23712 -15.75148 -15.28139 -15.09717 -14.89716 -14.41886 -14.31316 -14.19649 -13.88855 -13.55903 -13.21581 -12.70871 -12.61419 -12.51785 -12.48983 -12.34164 -12.21709 -11.89524 -11.72046 -11.56620 -11.46230 -11.19525 -11.13083 -10.92778 -10.81944 -10.65745 -10.58668 -10.24768 -10.18543 -9.99547 -9.81426 -9.71696 -9.65194 -8.76785 -8.44162 -8.29121 -7.76384 -6.04785 -4.09864 1.91064 2.83411 3.14984 3.31379 3.36313 3.38406 3.51633 3.99982 4.44114 4.71280 4.74798 4.83438 4.93453 5.12077 5.18670 5.19758 5.25995 5.29245 5.36583 5.39214 5.48725 5.55092 5.59554 5.63689 5.67865 5.75495 5.81729 5.85901 5.92978 5.93859 5.98952 6.01792 6.08056 6.10247 6.19336 6.30745 6.31893 6.36760 6.38680 6.48553 6.72239 6.73005 6.82565 7.04601 7.33385 7.45471 7.52840 7.91322 8.22176 8.36541 8.89710 9.09625 9.55411 11.03288 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009001 B = 0.004693 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3110.019173 B = 5964.721245 C = 8637.604977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.121 4.121 7 C -0.067 4.067 8 H 0.075 0.925 9 C -0.140 4.140 10 C 0.509 3.491 11 O -0.531 6.531 12 N -0.596 5.596 13 C 0.247 3.753 14 C -0.528 4.528 15 H 0.058 0.942 16 C 0.063 3.937 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.191 3.809 23 C -0.025 4.025 24 C -0.195 4.195 25 C -0.213 4.213 26 C -0.051 4.051 27 O -0.177 6.177 28 C -0.108 4.108 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.032 0.968 41 H 0.043 0.957 42 H 0.264 0.736 43 H 0.114 0.886 44 H 0.084 0.916 45 H 0.149 0.851 46 H 0.144 0.856 47 H 0.197 0.803 48 H 0.060 0.940 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.852 2.239 -1.579 19.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.158 4.158 7 C -0.086 4.086 8 H 0.093 0.907 9 C -0.180 4.180 10 C 0.297 3.703 11 O -0.408 6.408 12 N -0.328 5.328 13 C 0.128 3.872 14 C -0.566 4.566 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C 0.067 3.933 23 C -0.076 4.076 24 C -0.215 4.215 25 C -0.232 4.232 26 C -0.119 4.119 27 O -0.073 6.073 28 C -0.145 4.145 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.132 0.868 44 H 0.102 0.898 45 H 0.167 0.833 46 H 0.162 0.838 47 H 0.214 0.786 48 H 0.079 0.921 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.526 2.589 -0.911 18.728 hybrid contribution 0.692 -0.672 -0.022 0.965 sum -17.834 1.918 -0.932 17.961 Atomic orbital electron populations 1.21832 0.95663 1.01553 1.01295 1.21118 0.94869 0.99776 0.95275 0.91349 1.21604 0.96173 1.00257 0.96996 1.21501 0.94772 1.00998 0.98164 1.21721 1.03085 0.97886 0.93128 1.20857 0.93856 1.00305 0.93596 0.90697 1.21834 0.93862 1.02304 1.00046 1.20454 0.89244 0.78927 0.81684 1.90632 1.70267 1.42243 1.37635 1.48335 1.09671 1.53175 1.21590 1.19282 0.72002 0.98419 0.97463 1.21391 0.91493 1.08514 1.35249 0.92417 1.24921 0.97038 0.96488 0.95506 1.69924 1.04657 1.34369 1.44313 0.86581 0.78001 0.82531 0.80441 1.20223 1.21212 1.20178 1.19869 0.97603 0.90594 0.85284 1.23333 0.85774 0.99080 0.99410 1.21703 1.01837 1.02079 0.95893 1.21820 0.96064 1.02705 1.02636 1.23924 1.01089 0.99567 0.87355 1.84000 1.37971 1.45854 1.39465 1.21650 0.95291 1.00419 0.97147 0.93008 0.92858 0.92888 0.92620 0.92278 0.92112 0.92409 0.89335 0.92975 0.89727 0.89330 0.95043 0.93857 0.92664 0.86773 0.89804 0.83283 0.83819 0.78601 0.92121 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.19 37.16 0.34 -0.93 16 2 C -0.09 -0.96 2.72 -90.62 -0.25 -1.21 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.11 -1.21 5.20 -26.74 -0.14 -1.35 16 5 C -0.12 -1.51 5.92 -26.73 -0.16 -1.66 16 6 C -0.12 -1.82 4.95 -26.73 -0.13 -1.96 16 7 C -0.07 -0.96 1.84 -90.62 -0.17 -1.13 16 8 H 0.07 1.21 7.95 -51.93 -0.41 0.80 16 9 C -0.14 -2.14 3.73 -27.88 -0.10 -2.24 16 10 C 0.51 10.47 7.39 -10.99 -0.08 10.39 16 11 O -0.53 -13.00 13.55 5.55 0.08 -12.93 16 12 N -0.60 -12.43 2.44 -176.44 -0.43 -12.86 16 13 C 0.25 6.37 5.16 -5.20 -0.03 6.34 16 14 C -0.53 -14.63 9.39 -34.44 -0.32 -14.95 16 15 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 18 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.19 3.12 5.74 -5.19 -0.03 3.09 16 23 C -0.02 -0.39 6.85 -35.62 -0.24 -0.63 16 24 C -0.20 -3.05 10.81 -39.70 -0.43 -3.48 16 25 C -0.21 -2.84 10.91 -39.71 -0.43 -3.28 16 26 C -0.05 -0.64 12.09 29.41 0.36 -0.28 16 27 O -0.18 -2.59 9.55 5.69 0.05 -2.53 16 28 C -0.11 -1.22 4.48 -26.73 -0.12 -1.34 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 1.68 5.95 -51.93 -0.31 1.37 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.15 7.40 -51.92 -0.38 0.77 16 39 H 0.09 1.27 6.93 -51.93 -0.36 0.91 16 40 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 41 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 43 H 0.11 1.82 8.07 -51.93 -0.42 1.40 16 44 H 0.08 1.13 6.44 -51.93 -0.33 0.80 16 45 H 0.15 2.32 8.06 -52.49 -0.42 1.90 16 46 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 47 H 0.20 1.59 8.06 -52.48 -0.42 1.17 16 48 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 389.61 15.07 5.87 5.87 Total: -1.00 -32.07 389.61 -9.24 -41.31 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -8.49 Total: 3.10 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -2.03 Total: -12.95 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.31 Total: -38.46 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: 0.13 Total: -15.46 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.07 -9.24 -41.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330520826.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.532 kcal (2) G-P(sol) polarization free energy of solvation -32.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds