Wall clock time and date at job start Tue Mar 31 2020 14:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47269 * 299.99806 * 5 4 2 7 7 C 1.53005 * 109.46542 * 59.99862 * 6 5 4 8 8 H 1.09001 * 109.46812 * 60.00243 * 7 6 5 9 9 C 1.52996 * 109.47056 * 179.97438 * 7 6 5 10 10 C 1.50702 * 109.47417 * 295.00407 * 9 7 6 11 11 O 1.21286 * 119.99909 * 359.97438 * 10 9 7 12 12 N 1.34775 * 120.00459 * 179.97438 * 10 9 7 13 13 C 1.46493 * 120.00236 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47166 * 89.99987 * 13 12 10 15 15 H 1.07999 * 120.00119 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99787 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00342 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99851 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.46536 * 60.00428 * 18 16 14 20 20 H 1.48499 * 109.47129 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47291 * 300.00566 * 18 16 14 22 22 C 1.46501 * 119.99764 * 359.97438 * 12 10 9 23 23 C 1.50699 * 109.47159 * 89.99952 * 22 12 10 24 24 C 1.34517 * 125.79013 * 89.99518 * 23 22 12 25 25 C 1.41382 * 106.83913 * 180.02562 * 24 23 22 26 26 C 1.34507 * 106.84632 * 0.02562 * 25 24 23 27 27 O 1.34303 * 125.79040 * 269.69431 * 23 22 12 28 28 C 1.52997 * 109.47452 * 300.00026 * 7 6 5 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 33 33 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 34 34 H 1.09001 * 109.47289 * 60.00300 * 5 4 2 35 35 H 1.09004 * 109.47261 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.47192 * 179.97438 * 6 5 4 37 37 H 1.08998 * 109.46876 * 300.00443 * 6 5 4 38 38 H 1.09008 * 109.47057 * 54.99968 * 9 7 6 39 39 H 1.08997 * 109.47395 * 174.99794 * 9 7 6 40 40 H 1.09004 * 109.47211 * 210.00272 * 13 12 10 41 41 H 1.08996 * 109.47247 * 329.99998 * 13 12 10 42 42 H 0.97001 * 120.00194 * 179.97438 * 17 16 14 43 43 H 1.08997 * 109.46949 * 209.99744 * 22 12 10 44 44 H 1.09004 * 109.46913 * 330.00281 * 22 12 10 45 45 H 1.07997 * 126.57846 * 359.97438 * 24 23 22 46 46 H 1.08002 * 126.57735 * 180.02562 * 25 24 23 47 47 H 1.08005 * 125.79476 * 180.02562 * 26 25 24 48 48 H 1.09001 * 109.46832 * 300.00199 * 28 7 6 49 49 H 1.08993 * 109.47194 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5700 -0.7218 1.2488 6 6 4.0795 -1.4434 -0.0005 7 6 3.5694 -0.7221 -1.2497 8 1 3.9332 0.3054 -1.2498 9 6 4.0794 -1.4432 -2.4990 10 6 5.5813 -1.3370 -2.5625 11 8 6.1845 -0.7425 -1.6943 12 7 6.2544 -1.9025 -3.5841 13 6 7.7143 -1.7987 -3.6461 14 6 8.3322 -2.9677 -2.9232 15 1 7.7006 -3.7137 -2.4639 16 6 9.7040 -3.0855 -2.8491 17 7 10.4732 -2.1775 -3.4088 18 14 10.4699 -4.5343 -1.9525 19 1 10.0353 -5.8003 -2.5957 20 1 11.9498 -4.4291 -2.0155 21 1 10.0334 -4.5249 -0.5331 22 6 5.5259 -2.6211 -4.6325 23 6 5.1589 -1.6628 -5.7362 24 6 5.9097 -1.3822 -6.8164 25 6 5.1877 -0.4390 -7.5833 26 6 4.0391 -0.1992 -6.9256 27 8 4.0241 -0.9483 -5.8109 28 6 2.0395 -0.7215 -1.2494 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.6767 -0.2074 2.1392 33 1 1.6768 -1.7489 1.2491 34 1 3.9338 0.3057 1.2487 35 1 3.9334 -1.2361 2.1386 36 1 5.1695 -1.4434 -0.0009 37 1 3.7158 -2.4709 -0.0002 38 1 3.7911 -2.4936 -2.4553 39 1 3.6447 -0.9838 -3.3866 40 1 8.0351 -1.8049 -4.6878 41 1 8.0329 -0.8697 -3.1734 42 1 11.4382 -2.2602 -3.3564 43 1 6.1563 -3.4141 -5.0347 44 1 4.6190 -3.0557 -4.2122 45 1 6.8785 -1.7971 -7.0522 46 1 5.4987 0.0039 -8.5179 47 1 3.2586 0.4764 -7.2431 48 1 1.6758 -1.7491 -1.2492 49 1 1.6761 -0.2073 -2.1390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330520826.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:27 Heat of formation + Delta-G solvation = -70.577063 kcal Electronic energy + Delta-G solvation = -27851.290972 eV Core-core repulsion = 24163.999323 eV Total energy + Delta-G solvation = -3687.291650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.43066 -41.04114 -39.38267 -36.88563 -34.92275 -34.20842 -33.83268 -32.66844 -31.52382 -29.85693 -27.94098 -27.11189 -26.71793 -24.75710 -22.87481 -22.59819 -21.87012 -21.52839 -20.62642 -19.85243 -18.81054 -18.16804 -17.77920 -17.29578 -16.66681 -16.38050 -16.16115 -16.00635 -15.43253 -15.37993 -14.99431 -14.71600 -14.52411 -14.14097 -14.04284 -13.80227 -13.73291 -13.54684 -13.35104 -13.18359 -13.04639 -13.03077 -12.68969 -12.65249 -12.55265 -12.41988 -12.20063 -12.11029 -11.84431 -11.75181 -11.64038 -11.27694 -11.11468 -10.82081 -10.80866 -10.63812 -10.37406 -9.63378 -9.36324 -8.22107 -6.36728 0.77104 1.36914 1.41232 1.48268 1.69611 1.80360 2.15674 2.35710 2.50471 3.08099 3.65357 3.73000 3.81621 3.83558 4.01750 4.07955 4.16782 4.20486 4.34766 4.36714 4.39172 4.51168 4.56882 4.62178 4.64631 4.77382 4.81681 4.86237 4.91494 4.94398 4.98386 5.04217 5.06102 5.08454 5.14128 5.21301 5.23882 5.25637 5.33077 5.40873 5.46893 5.51434 5.53482 5.62651 5.63588 5.68164 5.81439 6.05873 6.23823 6.67558 6.75180 7.28908 7.47911 8.85308 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009001 B = 0.004693 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3110.019173 B = 5964.721245 C = 8637.604977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 H 0.058 0.942 4 C -0.107 4.107 5 C -0.116 4.116 6 C -0.120 4.120 7 C -0.064 4.064 8 H 0.047 0.953 9 C -0.125 4.125 10 C 0.498 3.502 11 O -0.582 6.582 12 N -0.601 5.601 13 C 0.267 3.733 14 C -0.541 4.541 15 H 0.058 0.942 16 C 0.009 3.991 17 N -0.929 5.929 18 Si 0.966 3.034 19 H -0.258 1.258 20 H -0.280 1.280 21 H -0.278 1.278 22 C 0.191 3.809 23 C -0.043 4.043 24 C -0.213 4.213 25 C -0.231 4.231 26 C -0.034 4.034 27 O -0.180 6.180 28 C -0.099 4.099 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.040 0.960 37 H 0.064 0.936 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.020 0.980 41 H -0.008 1.008 42 H 0.266 0.734 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.137 0.863 46 H 0.166 0.834 47 H 0.244 0.756 48 H 0.075 0.925 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.220 1.189 -1.932 22.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 H 0.076 0.924 4 C -0.144 4.144 5 C -0.153 4.153 6 C -0.157 4.157 7 C -0.083 4.083 8 H 0.066 0.934 9 C -0.164 4.164 10 C 0.288 3.712 11 O -0.462 6.462 12 N -0.332 5.332 13 C 0.146 3.854 14 C -0.580 4.580 15 H 0.076 0.924 16 C -0.190 4.190 17 N -0.569 5.569 18 Si 0.790 3.210 19 H -0.182 1.182 20 H -0.206 1.206 21 H -0.204 1.204 22 C 0.068 3.932 23 C -0.094 4.094 24 C -0.233 4.233 25 C -0.249 4.249 26 C -0.101 4.101 27 O -0.076 6.076 28 C -0.137 4.137 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.038 0.962 41 H 0.010 0.990 42 H 0.075 0.925 43 H 0.130 0.870 44 H 0.136 0.864 45 H 0.155 0.845 46 H 0.183 0.817 47 H 0.260 0.740 48 H 0.094 0.906 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.935 1.519 -1.296 22.026 hybrid contribution 1.762 -0.252 0.022 1.780 sum -20.173 1.267 -1.274 20.253 Atomic orbital electron populations 1.21779 0.93710 1.02295 1.02028 1.21123 0.96396 0.99012 0.94586 0.92355 1.21570 0.93811 1.01150 0.97885 1.21482 0.96920 0.99803 0.97141 1.21644 1.00145 0.99082 0.94838 1.20830 0.96360 0.98407 0.92694 0.93396 1.21829 0.89137 1.04221 1.01228 1.21496 0.91528 0.77632 0.80505 1.90613 1.71807 1.44351 1.39465 1.48309 1.07961 1.53761 1.23177 1.18667 0.75487 0.95532 0.95741 1.21678 0.92043 1.08878 1.35360 0.92398 1.25846 0.97596 0.99364 0.96188 1.70056 1.04986 1.36304 1.45549 0.85494 0.77159 0.79547 0.78779 1.18195 1.20562 1.20383 1.20025 0.98322 0.90375 0.84520 1.23030 0.86762 1.00230 0.99417 1.21897 1.01716 1.02892 0.96832 1.22126 0.96416 1.02686 1.03721 1.24838 1.01456 0.98157 0.85633 1.83983 1.37221 1.45976 1.40444 1.21602 0.92150 1.01689 0.98215 0.92308 0.92068 0.92244 0.91311 0.91272 0.93543 0.92242 0.94089 0.91769 0.87104 0.87634 0.96200 0.98990 0.92480 0.87017 0.86371 0.84472 0.81661 0.74018 0.90601 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.19 71.98 0.66 -1.28 16 2 C -0.09 -1.71 2.72 -10.79 -0.03 -1.73 16 3 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.11 -2.06 5.20 30.59 0.16 -1.90 16 5 C -0.12 -2.98 5.92 30.60 0.18 -2.80 16 6 C -0.12 -3.65 4.95 30.60 0.15 -3.50 16 7 C -0.06 -1.80 1.84 -10.79 -0.02 -1.82 16 8 H 0.05 1.60 7.95 -2.39 -0.02 1.58 16 9 C -0.12 -3.66 3.73 29.85 0.11 -3.55 16 10 C 0.50 21.20 7.39 87.66 0.65 21.85 16 11 O -0.58 -30.53 13.55 -3.05 -0.04 -30.58 16 12 N -0.60 -25.98 2.44 -830.51 -2.03 -28.01 16 13 C 0.27 14.61 5.16 85.63 0.44 15.06 16 14 C -0.54 -31.15 9.39 25.60 0.24 -30.91 16 15 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 16 C 0.01 0.52 5.46 84.66 0.46 0.99 16 17 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 18 Si 0.97 45.00 29.54 68.60 2.03 47.02 16 19 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 C 0.19 6.16 5.74 85.63 0.49 6.66 16 23 C -0.04 -1.34 6.85 24.83 0.17 -1.17 16 24 C -0.21 -6.70 10.81 22.19 0.24 -6.47 16 25 C -0.23 -5.77 10.91 22.19 0.24 -5.53 16 26 C -0.03 -0.72 12.09 66.97 0.81 0.09 16 27 O -0.18 -4.84 9.55 -2.57 -0.02 -4.87 16 28 C -0.10 -1.96 4.48 30.60 0.14 -1.83 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.04 1.65 5.95 -2.39 -0.01 1.63 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.11 2.70 7.40 -2.38 -0.02 2.68 16 39 H 0.11 2.78 6.93 -2.39 -0.02 2.77 16 40 H 0.02 1.12 8.07 -2.38 -0.02 1.10 16 41 H -0.01 -0.52 7.42 -2.39 -0.02 -0.53 16 42 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 43 H 0.11 3.61 8.07 -2.39 -0.02 3.60 16 44 H 0.12 2.95 6.44 -2.39 -0.02 2.93 16 45 H 0.14 4.52 8.06 -2.91 -0.02 4.49 16 46 H 0.17 3.28 8.06 -2.91 -0.02 3.26 16 47 H 0.24 2.73 8.06 -2.91 -0.02 2.70 16 48 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -75.00 389.61 6.22 -68.78 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.90 Total: 22.04 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 5.10 Total: -17.86 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -1.74 Total: -84.54 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.07 Total: -35.44 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -75.00 6.22 -68.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330520826.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.797 kcal (2) G-P(sol) polarization free energy of solvation -75.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds