Wall clock time and date at job start Tue Mar 31 2020 12:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47002 * 2 1 4 4 N 1.46501 * 109.47033 * 180.02562 * 3 2 1 5 5 C 1.37099 * 120.00222 * 270.00368 * 4 3 2 6 6 H 1.08000 * 120.00021 * 145.32425 * 5 4 3 7 7 C 1.38954 * 119.99856 * 325.32447 * 5 4 3 8 8 N 1.31413 * 119.99693 * 337.24081 * 7 5 4 9 9 Si 1.86794 * 120.00094 * 157.24400 * 7 5 4 10 10 H 1.48508 * 109.47067 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47457 * 119.99852 * 9 7 5 12 12 H 1.48495 * 109.47314 * 240.00215 * 9 7 5 13 13 C 1.34785 * 120.00067 * 90.00088 * 4 3 2 14 14 O 1.21288 * 119.99271 * 4.88933 * 13 4 3 15 15 C 1.50695 * 120.00141 * 184.88402 * 13 4 3 16 16 C 1.52992 * 109.47033 * 177.73757 * 15 13 4 17 17 O 1.42903 * 109.47378 * 179.97438 * 16 15 13 18 18 C 1.35900 * 117.00174 * 179.97438 * 17 16 15 19 19 C 1.38748 * 120.05906 * 359.97438 * 18 17 16 20 20 C 1.38112 * 119.94574 * 180.02562 * 19 18 17 21 21 C 1.50709 * 119.97250 * 179.97438 * 20 19 18 22 22 C 1.38287 * 120.05881 * 359.72994 * 20 19 18 23 23 C 1.38249 * 120.10553 * 0.54238 * 22 20 19 24 24 C 1.50699 * 119.96694 * 179.72749 * 23 22 20 25 25 C 1.38159 * 120.05746 * 359.45599 * 23 22 20 26 26 C 1.50697 * 120.02927 * 180.29417 * 25 23 22 27 27 H 1.09000 * 109.46948 * 299.99922 * 1 2 3 28 28 H 1.09002 * 109.47447 * 59.99461 * 1 2 3 29 29 H 1.08995 * 109.47158 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46878 * 240.00452 * 2 1 3 31 31 H 1.08999 * 109.47498 * 120.00007 * 2 1 3 32 32 H 1.09007 * 109.46934 * 60.00487 * 3 2 1 33 33 H 1.08998 * 109.47714 * 300.00108 * 3 2 1 34 34 H 0.96998 * 119.99510 * 184.95223 * 8 7 5 35 35 H 1.09002 * 109.46818 * 57.73788 * 15 13 4 36 36 H 1.08999 * 109.47267 * 297.74072 * 15 13 4 37 37 H 1.09002 * 109.47293 * 60.00322 * 16 15 13 38 38 H 1.08999 * 109.47351 * 300.00264 * 16 15 13 39 39 H 1.08006 * 120.02352 * 359.97438 * 19 18 17 40 40 H 1.08999 * 109.46571 * 90.00088 * 21 20 19 41 41 H 1.08996 * 109.47062 * 210.00266 * 21 20 19 42 42 H 1.09001 * 109.46692 * 329.99971 * 21 20 19 43 43 H 1.07996 * 119.94897 * 180.29448 * 22 20 19 44 44 H 1.09002 * 109.47285 * 269.72888 * 24 23 22 45 45 H 1.08998 * 109.47682 * 29.73030 * 24 23 22 46 46 H 1.09009 * 109.47100 * 149.72936 * 24 23 22 47 47 H 1.08994 * 109.47685 * 89.99864 * 26 25 23 48 48 H 1.08997 * 109.47408 * 210.00229 * 26 25 23 49 49 H 1.09007 * 109.47096 * 329.99874 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.4423 1.1864 6 1 5.1272 0.9102 1.2689 7 6 3.6818 2.1267 2.2833 8 7 2.8295 3.1111 2.1057 9 14 4.2088 1.6476 4.0101 10 1 5.1686 0.5166 3.9388 11 1 4.8592 2.8085 4.6692 12 1 3.0174 1.2363 4.7951 13 6 4.1784 1.4427 -1.1682 14 8 3.5747 1.5324 -2.2163 15 6 5.6812 1.3316 -1.1712 16 6 6.1873 1.2989 -2.6147 17 8 7.6124 1.1941 -2.6176 18 6 8.2255 1.1523 -3.8298 19 6 7.4709 1.2103 -4.9926 20 6 8.0963 1.1670 -6.2233 21 6 7.2772 1.2294 -7.4868 22 6 9.4739 1.0716 -6.2971 23 6 10.2277 1.0080 -5.1400 24 6 11.7283 0.8979 -5.2242 25 6 9.6068 1.0509 -3.9065 26 6 10.4296 0.9882 -2.6455 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 2.5293 3.6354 2.8645 35 1 5.9788 0.4155 -0.6610 36 1 6.1101 2.1906 -0.6552 37 1 5.8897 2.2150 -3.1249 38 1 5.7584 0.4399 -3.1307 39 1 6.3952 1.2884 -4.9355 40 1 7.1547 2.2694 -7.7893 41 1 7.7864 0.6785 -8.2775 42 1 6.2980 0.7854 -7.3072 43 1 9.9615 1.0427 -7.2603 44 1 12.0148 -0.1536 -5.2467 45 1 12.0784 1.3893 -6.1319 46 1 12.1772 1.3782 -4.3547 47 1 10.7030 1.9979 -2.3393 48 1 9.8477 0.5140 -1.8552 49 1 11.3333 0.4072 -2.8298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337256684.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:30 Heat of formation + Delta-G solvation = -75.843093 kcal Electronic energy + Delta-G solvation = -26759.837551 eV Core-core repulsion = 23072.317549 eV Total energy + Delta-G solvation = -3687.520002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.27007 -38.75152 -37.63980 -35.22800 -34.32666 -32.90666 -31.92805 -31.32179 -30.23156 -29.20368 -27.17004 -26.09926 -25.10697 -24.55984 -23.15625 -21.43263 -20.71751 -19.94990 -19.06972 -17.46307 -16.66049 -16.17105 -15.96439 -15.81110 -15.35803 -14.77539 -14.38552 -14.34877 -13.96344 -13.74631 -13.68885 -13.39274 -13.31379 -12.91141 -12.83499 -12.77443 -12.68487 -12.59185 -12.02945 -11.92096 -11.84619 -11.61228 -11.40946 -11.35287 -11.26325 -11.09408 -10.98779 -10.94369 -10.68545 -10.54141 -10.34268 -10.31732 -10.17901 -9.76805 -9.19591 -8.52293 -8.45573 -7.91489 -7.55790 -6.43705 -4.09922 1.34153 1.53347 3.06019 3.18466 3.22030 3.36508 3.73627 3.81370 4.07161 4.71616 4.75271 4.80973 4.94181 5.06959 5.15629 5.18439 5.28314 5.43609 5.46990 5.50066 5.51730 5.55775 5.69969 5.73045 5.75743 5.76998 5.79281 5.80440 5.82777 5.88714 6.00404 6.01637 6.27106 6.33295 6.38645 6.46177 6.46391 6.50571 6.57387 6.59124 6.66024 6.66930 6.78274 6.93855 7.08811 7.32140 7.48207 7.66332 7.88276 8.31383 9.00489 9.43494 9.87147 10.57777 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015223 B = 0.002949 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.934826 B = 9492.342599 C =10950.625964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.109 3.891 4 N -0.433 5.433 5 C -0.346 4.346 6 H 0.093 0.907 7 C 0.046 3.954 8 N -0.857 5.857 9 Si 0.914 3.086 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.472 3.528 14 O -0.611 6.611 15 C -0.117 4.117 16 C 0.078 3.922 17 O -0.314 6.314 18 C 0.147 3.853 19 C -0.211 4.211 20 C -0.051 4.051 21 C -0.114 4.114 22 C -0.163 4.163 23 C -0.052 4.052 24 C -0.113 4.113 25 C -0.130 4.130 26 C -0.104 4.104 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.055 0.945 34 H 0.271 0.729 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.131 0.869 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.118 0.882 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.833 -4.205 -10.406 15.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C -0.014 4.014 4 N -0.150 5.150 5 C -0.473 4.473 6 H 0.110 0.890 7 C -0.161 4.161 8 N -0.493 5.493 9 Si 0.740 3.260 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.204 1.204 13 C 0.261 3.739 14 O -0.499 6.499 15 C -0.157 4.157 16 C 0.003 3.997 17 O -0.227 6.227 18 C 0.100 3.900 19 C -0.230 4.230 20 C -0.051 4.051 21 C -0.171 4.171 22 C -0.181 4.181 23 C -0.052 4.052 24 C -0.169 4.169 25 C -0.130 4.130 26 C -0.161 4.161 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.149 0.851 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.136 0.864 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.428 -4.061 -10.548 15.379 hybrid contribution -0.068 -0.105 0.882 0.891 sum 10.360 -4.167 -9.666 14.769 Atomic orbital electron populations 1.21655 0.96535 1.00463 1.01441 1.21819 0.94739 0.99358 1.01214 1.21516 0.81264 0.94739 1.03885 1.43439 1.04859 1.62323 1.04419 1.19499 1.07751 1.32860 0.87237 0.88961 1.25346 0.96437 0.93967 1.00304 1.69867 1.31793 1.15649 1.31972 0.86081 0.78719 0.78966 0.82217 1.19056 1.20643 1.20447 1.20008 0.88391 0.81201 0.84345 1.90526 1.70454 1.56835 1.32036 1.21198 0.94963 1.04940 0.94591 1.22570 0.76223 1.02048 0.98822 1.86004 1.22869 1.87496 1.26330 1.18802 0.91608 0.95011 0.84531 1.21231 1.00576 1.09408 0.91782 1.19642 0.93806 0.97124 0.94510 1.20800 0.99494 1.02334 0.94479 1.20697 0.93014 1.06810 0.97612 1.19497 0.95753 0.98191 0.91769 1.20798 0.91230 1.02220 1.02696 1.19053 0.90734 1.07648 0.95605 1.20603 0.98691 1.02017 0.94751 0.92926 0.93144 0.93604 0.93199 0.92221 0.87364 0.92659 0.91878 0.89391 0.88507 0.91513 0.91797 0.85069 0.91091 0.91616 0.91399 0.86369 0.91148 0.91609 0.91179 0.91597 0.91005 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.91 37.16 0.37 -2.03 16 2 C -0.13 -2.70 6.26 -26.73 -0.17 -2.87 16 3 C 0.11 2.60 5.05 -4.04 -0.02 2.58 16 4 N -0.43 -10.78 2.54 -114.81 -0.29 -11.07 16 5 C -0.35 -8.59 8.73 -14.93 -0.13 -8.72 16 6 H 0.09 2.19 6.95 -52.49 -0.36 1.82 16 7 C 0.05 1.13 4.95 -17.47 -0.09 1.05 16 8 N -0.86 -22.21 11.34 55.50 0.63 -21.58 16 9 Si 0.91 19.05 29.61 -169.99 -5.03 14.02 16 10 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 11 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 12 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 13 C 0.47 11.33 7.62 -10.98 -0.08 11.25 16 14 O -0.61 -15.80 15.54 5.55 0.09 -15.71 16 15 C -0.12 -2.35 4.69 -27.89 -0.13 -2.48 16 16 C 0.08 1.43 4.03 37.15 0.15 1.58 16 17 O -0.31 -5.42 9.18 -19.43 -0.18 -5.60 16 18 C 0.15 2.33 6.66 -39.22 -0.26 2.07 16 19 C -0.21 -3.17 8.69 -39.44 -0.34 -3.51 16 20 C -0.05 -0.65 5.88 -104.65 -0.62 -1.27 16 21 C -0.11 -1.15 10.01 36.01 0.36 -0.79 16 22 C -0.16 -1.94 9.35 -39.56 -0.37 -2.31 16 23 C -0.05 -0.63 5.88 -104.65 -0.62 -1.24 16 24 C -0.11 -0.98 9.19 36.00 0.33 -0.65 16 25 C -0.13 -1.81 5.89 -104.48 -0.62 -2.43 16 26 C -0.10 -1.25 8.97 36.00 0.32 -0.93 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.11 2.73 5.36 -51.93 -0.28 2.45 16 33 H 0.05 1.37 7.36 -51.93 -0.38 0.98 16 34 H 0.27 6.60 8.32 -40.82 -0.34 6.26 16 35 H 0.09 1.67 7.68 -51.93 -0.40 1.27 16 36 H 0.10 1.96 8.09 -51.93 -0.42 1.53 16 37 H 0.07 1.25 7.60 -51.93 -0.39 0.85 16 38 H 0.06 1.16 7.64 -51.93 -0.40 0.76 16 39 H 0.13 1.99 6.30 -52.48 -0.33 1.66 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 42 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 43 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 46 H 0.07 0.57 6.70 -51.92 -0.35 0.22 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.07 0.93 7.53 -51.93 -0.39 0.54 16 49 H 0.06 0.61 6.70 -51.93 -0.35 0.27 16 LS Contribution 394.98 15.07 5.95 5.95 Total: -1.00 -28.67 394.98 -8.99 -37.67 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -8.25 Total: 7.04 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -1.91 Total: -10.71 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.34 Total: -32.66 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.09 Total: -21.32 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -28.67 -8.99 -37.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337256684.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.178 kcal (2) G-P(sol) polarization free energy of solvation -28.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds