Wall clock time and date at job start Tue Mar 31 2020 12:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47002 * 2 1 4 4 N 1.46501 * 109.47033 * 180.02562 * 3 2 1 5 5 C 1.37099 * 120.00222 * 270.00368 * 4 3 2 6 6 H 1.08000 * 120.00021 * 145.32425 * 5 4 3 7 7 C 1.38954 * 119.99856 * 325.32447 * 5 4 3 8 8 N 1.31413 * 119.99693 * 337.24081 * 7 5 4 9 9 Si 1.86794 * 120.00094 * 157.24400 * 7 5 4 10 10 H 1.48508 * 109.47067 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47457 * 119.99852 * 9 7 5 12 12 H 1.48495 * 109.47314 * 240.00215 * 9 7 5 13 13 C 1.34785 * 120.00067 * 90.00088 * 4 3 2 14 14 O 1.21288 * 119.99271 * 4.88933 * 13 4 3 15 15 C 1.50695 * 120.00141 * 184.88402 * 13 4 3 16 16 C 1.52992 * 109.47033 * 177.73757 * 15 13 4 17 17 O 1.42903 * 109.47378 * 179.97438 * 16 15 13 18 18 C 1.35900 * 117.00174 * 179.97438 * 17 16 15 19 19 C 1.38748 * 120.05906 * 359.97438 * 18 17 16 20 20 C 1.38112 * 119.94574 * 180.02562 * 19 18 17 21 21 C 1.50709 * 119.97250 * 179.97438 * 20 19 18 22 22 C 1.38287 * 120.05881 * 359.72994 * 20 19 18 23 23 C 1.38249 * 120.10553 * 0.54238 * 22 20 19 24 24 C 1.50699 * 119.96694 * 179.72749 * 23 22 20 25 25 C 1.38159 * 120.05746 * 359.45599 * 23 22 20 26 26 C 1.50697 * 120.02927 * 180.29417 * 25 23 22 27 27 H 1.09000 * 109.46948 * 299.99922 * 1 2 3 28 28 H 1.09002 * 109.47447 * 59.99461 * 1 2 3 29 29 H 1.08995 * 109.47158 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46878 * 240.00452 * 2 1 3 31 31 H 1.08999 * 109.47498 * 120.00007 * 2 1 3 32 32 H 1.09007 * 109.46934 * 60.00487 * 3 2 1 33 33 H 1.08998 * 109.47714 * 300.00108 * 3 2 1 34 34 H 0.96998 * 119.99510 * 184.95223 * 8 7 5 35 35 H 1.09002 * 109.46818 * 57.73788 * 15 13 4 36 36 H 1.08999 * 109.47267 * 297.74072 * 15 13 4 37 37 H 1.09002 * 109.47293 * 60.00322 * 16 15 13 38 38 H 1.08999 * 109.47351 * 300.00264 * 16 15 13 39 39 H 1.08006 * 120.02352 * 359.97438 * 19 18 17 40 40 H 1.08999 * 109.46571 * 90.00088 * 21 20 19 41 41 H 1.08996 * 109.47062 * 210.00266 * 21 20 19 42 42 H 1.09001 * 109.46692 * 329.99971 * 21 20 19 43 43 H 1.07996 * 119.94897 * 180.29448 * 22 20 19 44 44 H 1.09002 * 109.47285 * 269.72888 * 24 23 22 45 45 H 1.08998 * 109.47682 * 29.73030 * 24 23 22 46 46 H 1.09009 * 109.47100 * 149.72936 * 24 23 22 47 47 H 1.08994 * 109.47685 * 89.99864 * 26 25 23 48 48 H 1.08997 * 109.47408 * 210.00229 * 26 25 23 49 49 H 1.09007 * 109.47096 * 329.99874 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.4423 1.1864 6 1 5.1272 0.9102 1.2689 7 6 3.6818 2.1267 2.2833 8 7 2.8295 3.1111 2.1057 9 14 4.2088 1.6476 4.0101 10 1 5.1686 0.5166 3.9388 11 1 4.8592 2.8085 4.6692 12 1 3.0174 1.2363 4.7951 13 6 4.1784 1.4427 -1.1682 14 8 3.5747 1.5324 -2.2163 15 6 5.6812 1.3316 -1.1712 16 6 6.1873 1.2989 -2.6147 17 8 7.6124 1.1941 -2.6176 18 6 8.2255 1.1523 -3.8298 19 6 7.4709 1.2103 -4.9926 20 6 8.0963 1.1670 -6.2233 21 6 7.2772 1.2294 -7.4868 22 6 9.4739 1.0716 -6.2971 23 6 10.2277 1.0080 -5.1400 24 6 11.7283 0.8979 -5.2242 25 6 9.6068 1.0509 -3.9065 26 6 10.4296 0.9882 -2.6455 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 2.5293 3.6354 2.8645 35 1 5.9788 0.4155 -0.6610 36 1 6.1101 2.1906 -0.6552 37 1 5.8897 2.2150 -3.1249 38 1 5.7584 0.4399 -3.1307 39 1 6.3952 1.2884 -4.9355 40 1 7.1547 2.2694 -7.7893 41 1 7.7864 0.6785 -8.2775 42 1 6.2980 0.7854 -7.3072 43 1 9.9615 1.0427 -7.2603 44 1 12.0148 -0.1536 -5.2467 45 1 12.0784 1.3893 -6.1319 46 1 12.1772 1.3782 -4.3547 47 1 10.7030 1.9979 -2.3393 48 1 9.8477 0.5140 -1.8552 49 1 11.3333 0.4072 -2.8298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337256684.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:29 Heat of formation + Delta-G solvation = -88.437527 kcal Electronic energy + Delta-G solvation = -26760.383687 eV Core-core repulsion = 23072.317549 eV Total energy + Delta-G solvation = -3688.066138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.42197 -40.56921 -38.87538 -37.11329 -35.26428 -34.61938 -33.50140 -32.93145 -31.53834 -30.12412 -28.04379 -27.77232 -26.81805 -25.72787 -24.58611 -22.61323 -22.30765 -21.19168 -20.80595 -18.94219 -18.31992 -17.59506 -17.40981 -17.26886 -16.61872 -16.38875 -16.10176 -15.82264 -15.47594 -15.04280 -14.86368 -14.51267 -14.36510 -14.23878 -14.18892 -13.77750 -13.69611 -13.64341 -13.43239 -13.28611 -13.16119 -13.01794 -12.79892 -12.75828 -12.62298 -12.50661 -12.36461 -12.21909 -12.15056 -12.01703 -12.00084 -11.61896 -11.54474 -11.51078 -11.08369 -10.46233 -9.50489 -9.45466 -9.01412 -8.33575 -6.06791 0.32700 0.47563 1.38873 1.48469 1.60668 1.92936 1.99172 2.32632 2.71182 2.97932 3.13306 3.74529 3.82500 3.93662 3.96089 4.06158 4.12782 4.21846 4.23401 4.26857 4.31464 4.44687 4.48242 4.58210 4.65985 4.74390 4.77986 4.78472 4.80188 4.81425 4.84088 4.87285 4.90515 4.94231 4.95453 5.06884 5.11421 5.20153 5.20225 5.34562 5.40150 5.43946 5.46475 5.56886 5.59383 5.68073 5.93053 5.98017 6.38567 6.42946 7.07357 7.51035 7.95123 8.69117 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015223 B = 0.002949 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.934826 B = 9492.342599 C =10950.625964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.123 4.123 3 C 0.109 3.891 4 N -0.445 5.445 5 C -0.363 4.363 6 H 0.102 0.898 7 C 0.006 3.994 8 N -0.890 5.890 9 Si 0.983 3.017 10 H -0.256 1.256 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.458 3.542 14 O -0.637 6.637 15 C -0.105 4.105 16 C 0.096 3.904 17 O -0.322 6.322 18 C 0.113 3.887 19 C -0.232 4.232 20 C -0.058 4.058 21 C -0.113 4.113 22 C -0.161 4.161 23 C -0.052 4.052 24 C -0.112 4.112 25 C -0.144 4.144 26 C -0.102 4.102 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.034 0.966 34 H 0.274 0.726 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.149 0.851 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.055 0.945 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.872 -5.271 -10.773 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C -0.015 4.015 4 N -0.161 5.161 5 C -0.490 4.490 6 H 0.119 0.881 7 C -0.197 4.197 8 N -0.527 5.527 9 Si 0.806 3.194 10 H -0.180 1.180 11 H -0.205 1.205 12 H -0.202 1.202 13 C 0.248 3.752 14 O -0.526 6.526 15 C -0.145 4.145 16 C 0.021 3.979 17 O -0.236 6.236 18 C 0.068 3.932 19 C -0.251 4.251 20 C -0.058 4.058 21 C -0.170 4.170 22 C -0.178 4.178 23 C -0.052 4.052 24 C -0.168 4.168 25 C -0.145 4.145 26 C -0.158 4.158 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.135 0.865 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.167 0.833 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.074 0.926 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.476 -5.134 -10.923 17.358 hybrid contribution -0.658 0.269 0.885 1.135 sum 11.818 -4.865 -10.038 16.250 Atomic orbital electron populations 1.21613 0.93609 1.02419 1.01743 1.21713 0.97268 0.96620 1.00569 1.21511 0.81197 0.96715 1.02043 1.43722 1.05392 1.62145 1.04874 1.19837 1.08390 1.33327 0.87418 0.88076 1.26193 0.96311 0.93409 1.03800 1.69968 1.32908 1.16576 1.33198 0.85032 0.78421 0.78748 0.77151 1.18002 1.20464 1.20238 1.20638 0.89977 0.80713 0.83852 1.90493 1.71391 1.57958 1.32806 1.21054 0.92230 1.05266 0.95948 1.22200 0.77305 1.01223 0.97214 1.85950 1.21719 1.88276 1.27653 1.19172 0.92708 0.97287 0.84070 1.21289 1.00061 1.10943 0.92830 1.20011 0.94887 0.96340 0.94598 1.20851 0.99091 1.03222 0.93788 1.21117 0.92556 1.05151 0.99017 1.19971 0.97809 0.96449 0.90957 1.20887 0.88413 1.03471 1.04020 1.19420 0.90062 1.07713 0.97319 1.20621 0.99147 1.02546 0.93483 0.92599 0.92901 0.90786 0.94088 0.92429 0.88736 0.94705 0.91591 0.88231 0.88735 0.92761 0.92273 0.86498 0.90233 0.89300 0.91959 0.83288 0.89712 0.89754 0.90494 0.91198 0.92628 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 9.91 71.98 0.71 -3.73 16 2 C -0.12 -5.05 6.26 30.59 0.19 -4.86 16 3 C 0.11 5.34 5.05 86.38 0.44 5.78 16 4 N -0.44 -22.77 2.54 -635.52 -1.61 -24.38 16 5 C -0.36 -18.18 8.73 84.04 0.73 -17.45 16 6 H 0.10 4.79 6.95 -2.91 -0.02 4.77 16 7 C 0.01 0.32 4.95 84.93 0.42 0.74 16 8 N -0.89 -46.80 11.34 21.66 0.25 -46.56 16 9 Si 0.98 38.69 29.61 68.60 2.03 40.72 16 10 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 11 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 12 H -0.28 -10.76 7.11 99.48 0.71 -10.06 16 13 C 0.46 22.87 7.62 87.65 0.67 23.54 16 14 O -0.64 -34.45 15.54 -3.05 -0.05 -34.50 16 15 C -0.11 -4.37 4.69 29.84 0.14 -4.23 16 16 C 0.10 3.69 4.03 71.98 0.29 3.98 16 17 O -0.32 -11.60 9.18 -92.43 -0.85 -12.45 16 18 C 0.11 3.69 6.66 22.51 0.15 3.84 16 19 C -0.23 -7.22 8.69 22.36 0.19 -7.03 16 20 C -0.06 -1.46 5.88 -19.88 -0.12 -1.57 16 21 C -0.11 -2.13 10.01 71.24 0.71 -1.41 16 22 C -0.16 -3.43 9.35 22.28 0.21 -3.23 16 23 C -0.05 -1.14 5.88 -19.88 -0.12 -1.26 16 24 C -0.11 -1.54 9.19 71.24 0.65 -0.89 16 25 C -0.14 -3.95 5.89 -19.77 -0.12 -4.06 16 26 C -0.10 -2.34 8.97 71.23 0.64 -1.70 16 27 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 30 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.09 4.91 5.36 -2.38 -0.01 4.90 16 33 H 0.03 1.80 7.36 -2.39 -0.02 1.78 16 34 H 0.27 13.49 8.32 -92.71 -0.77 12.72 16 35 H 0.10 3.86 7.68 -2.39 -0.02 3.85 16 36 H 0.09 3.95 8.09 -2.39 -0.02 3.93 16 37 H 0.05 2.18 7.60 -2.39 -0.02 2.16 16 38 H 0.06 2.28 7.64 -2.39 -0.02 2.27 16 39 H 0.12 3.84 6.30 -2.91 -0.02 3.82 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.09 1.25 8.09 -2.39 -0.02 1.23 16 42 H 0.06 1.23 8.08 -2.39 -0.02 1.21 16 43 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 44 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 46 H 0.08 0.98 6.70 -2.38 -0.02 0.97 16 47 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.05 1.44 7.53 -2.39 -0.02 1.43 16 49 H 0.09 1.53 6.70 -2.38 -0.02 1.51 16 Total: -1.00 -63.44 394.98 6.49 -56.95 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: 0.92 Total: 33.76 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 5.80 Total: -13.55 kcal Atomic # 7 Polarization: -69.57 SS G_CDS: -1.37 Total: -70.94 kcal Atomic # 8 Polarization: -46.05 SS G_CDS: -0.90 Total: -46.95 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -63.44 6.49 -56.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337256684.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.484 kcal (2) G-P(sol) polarization free energy of solvation -63.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds