Wall clock time and date at job start Tue Mar 31 2020 14:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35910 * 116.99665 * 2 1 4 4 C 1.38758 * 120.14239 * 4.75956 * 3 2 1 5 5 C 1.37914 * 119.80237 * 179.97438 * 4 3 2 6 6 C 1.38773 * 120.45916 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.81648 * 0.14521 * 6 5 4 8 8 C 1.38529 * 120.14367 * 184.78104 * 3 2 1 9 9 C 1.50735 * 121.65932 * 179.71536 * 7 6 5 10 10 C 1.52882 * 109.97475 * 16.88083 * 9 7 6 11 11 H 1.08993 * 109.63169 * 69.36796 * 10 9 7 12 12 C 1.53003 * 109.62759 * 189.95460 * 10 9 7 13 13 N 1.47167 * 108.51714 * 309.65917 * 10 9 7 14 14 C 1.46905 * 110.99579 * 307.87040 * 13 10 9 15 15 C 1.53003 * 109.47201 * 78.93897 * 14 13 10 16 16 O 1.42904 * 109.46612 * 66.20373 * 15 14 13 17 17 C 1.42908 * 113.99285 * 162.48125 * 16 15 14 18 18 C 1.50699 * 109.46491 * 185.72416 * 17 16 15 19 19 H 1.07993 * 120.00672 * 4.34744 * 18 17 16 20 20 C 1.37881 * 119.99823 * 184.34691 * 18 17 16 21 21 N 1.31516 * 119.99985 * 354.57727 * 20 18 17 22 22 Si 1.86803 * 120.00381 * 174.57358 * 20 18 17 23 23 H 1.48497 * 109.47146 * 180.02562 * 22 20 18 24 24 H 1.48500 * 109.46720 * 60.00031 * 22 20 18 25 25 H 1.48503 * 109.46962 * 300.00442 * 22 20 18 26 26 C 1.46619 * 110.23730 * 71.27882 * 13 10 9 27 27 H 1.09007 * 109.30449 * 67.68401 * 26 13 10 28 28 C 1.53001 * 109.30146 * 187.06112 * 26 13 10 29 29 H 1.08998 * 109.47029 * 64.41738 * 1 2 3 30 30 H 1.09000 * 109.46846 * 184.41434 * 1 2 3 31 31 H 1.08996 * 109.47198 * 304.41382 * 1 2 3 32 32 H 1.07995 * 120.09922 * 359.94419 * 4 3 2 33 33 H 1.08002 * 119.76714 * 179.97438 * 5 4 3 34 34 H 1.07996 * 119.84189 * 0.02562 * 8 3 2 35 35 H 1.08999 * 109.38024 * 256.72679 * 9 7 6 36 36 H 1.09000 * 109.30113 * 136.98513 * 9 7 6 37 37 H 1.09005 * 109.47146 * 179.02799 * 12 10 9 38 38 H 1.09004 * 109.46684 * 299.01679 * 12 10 9 39 39 H 1.08999 * 109.47367 * 59.02126 * 12 10 9 40 40 H 1.08997 * 109.47241 * 318.93707 * 14 13 10 41 41 H 1.09005 * 109.46379 * 198.93954 * 14 13 10 42 42 H 1.08991 * 109.46874 * 306.20216 * 15 14 13 43 43 H 1.09000 * 109.46840 * 186.20069 * 15 14 13 44 44 H 1.08997 * 109.46865 * 65.72670 * 17 16 15 45 45 H 1.08998 * 109.47310 * 305.72393 * 17 16 15 46 46 H 0.97002 * 119.99965 * 359.97438 * 21 20 18 47 47 H 1.08992 * 109.47432 * 33.90617 * 28 26 13 48 48 H 1.09005 * 109.47219 * 153.90937 * 28 26 13 49 49 H 1.09000 * 109.46978 * 273.90774 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2967 2.3747 0.0996 5 6 1.9301 3.5998 0.0994 6 6 3.3120 3.6773 -0.0002 7 6 4.0578 2.5221 -0.1027 8 6 3.4254 1.2889 -0.0998 9 6 5.5602 2.5581 -0.2194 10 6 6.0847 3.9283 0.2104 11 1 5.9496 4.0516 1.2849 12 6 7.5692 4.0439 -0.1416 13 7 5.3247 4.9653 -0.5056 14 6 5.3267 4.7144 -1.9530 15 6 4.3017 3.6276 -2.2836 16 8 2.9862 4.1147 -2.0108 17 6 1.9460 3.3611 -2.6370 18 6 0.6216 4.0397 -2.3997 19 1 0.5858 4.9906 -1.8889 20 6 -0.5447 3.4467 -2.8348 21 7 -0.4947 2.3437 -3.5493 22 14 -2.1958 4.2098 -2.4093 23 1 -3.2862 3.3860 -2.9903 24 1 -2.2635 5.5850 -2.9655 25 1 -2.3501 4.2646 -0.9333 26 6 3.9553 5.0395 0.0130 27 1 3.9769 5.4178 1.0350 28 6 3.1358 5.9941 -0.8577 29 1 -0.3633 0.4438 -0.9269 30 1 -0.3633 -1.0246 0.0791 31 1 -0.3633 0.5808 0.8478 32 1 0.2208 2.3212 0.1764 33 1 1.3463 4.5052 0.1765 34 1 4.0105 0.3846 -0.1782 35 1 5.8473 2.3689 -1.2537 36 1 5.9899 1.7887 0.4220 37 1 7.9363 5.0280 0.1502 38 1 8.1296 3.2749 0.3901 39 1 7.6994 3.9113 -1.2157 40 1 6.3183 4.3851 -2.2634 41 1 5.0667 5.6318 -2.4811 42 1 4.4968 2.7463 -1.6727 43 1 4.3798 3.3632 -3.3382 44 1 1.9204 2.3566 -2.2145 45 1 2.1361 3.2999 -3.7085 46 1 0.3627 1.9476 -3.7705 47 1 3.4736 5.9236 -1.8915 48 1 2.0814 5.7233 -0.8008 49 1 3.2683 7.0155 -0.5010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339080769.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:38 Heat of formation + Delta-G solvation = 12.715701 kcal Electronic energy + Delta-G solvation = -30844.426545 eV Core-core repulsion = 27160.746740 eV Total energy + Delta-G solvation = -3683.679804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.10569 -40.28029 -38.07629 -37.37125 -35.14625 -35.01323 -32.33781 -31.90975 -30.35902 -28.95728 -28.24792 -27.86207 -27.07101 -24.74865 -24.53560 -22.78676 -22.43521 -21.86565 -20.14860 -19.15815 -18.61301 -18.22604 -17.53829 -17.10690 -16.72736 -16.39966 -16.27657 -15.74032 -15.51635 -15.17558 -15.02954 -14.89493 -14.33132 -14.23201 -14.16567 -13.80063 -13.56273 -13.33942 -13.17397 -12.97699 -12.96172 -12.85123 -12.61956 -12.47563 -12.32083 -12.18054 -12.09256 -12.00481 -11.90616 -11.59904 -11.42213 -11.26551 -11.10223 -10.73927 -10.47165 -10.04926 -9.30623 -9.15208 -8.64421 -8.33168 -6.29148 0.62133 0.76525 1.49689 1.56115 1.74543 2.48109 2.51029 2.89658 3.00951 3.19142 3.35326 3.77937 3.91940 4.01326 4.04505 4.16048 4.24412 4.26517 4.30276 4.35848 4.40715 4.50295 4.51523 4.59298 4.61581 4.66357 4.72910 4.77353 4.79590 4.83128 4.85821 5.01439 5.04215 5.07517 5.14130 5.21835 5.23911 5.31138 5.33787 5.45580 5.56491 5.71832 5.74595 5.83219 5.89497 6.03819 6.08675 6.24418 6.26260 6.52748 6.60722 6.77018 7.46652 8.74133 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015166 B = 0.006433 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.795869 B = 4351.430354 C = 5374.550383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.340 6.340 3 C 0.084 3.916 4 C -0.185 4.185 5 C -0.042 4.042 6 C -0.068 4.068 7 C -0.081 4.081 8 C -0.179 4.179 9 C -0.107 4.107 10 C 0.078 3.922 11 H 0.088 0.912 12 C -0.134 4.134 13 N -0.510 5.510 14 C 0.062 3.938 15 C -0.051 4.051 16 O -0.327 6.327 17 C 0.190 3.810 18 C -0.570 4.570 19 H 0.057 0.943 20 C -0.025 4.025 21 N -0.933 5.933 22 Si 1.104 2.896 23 H -0.287 1.287 24 H -0.273 1.273 25 H -0.266 1.266 26 C 0.137 3.863 27 H 0.089 0.911 28 C -0.128 4.128 29 H 0.030 0.970 30 H 0.122 0.878 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.109 0.891 43 H 0.018 0.982 44 H -0.007 1.007 45 H -0.057 1.057 46 H 0.249 0.751 47 H 0.067 0.933 48 H 0.054 0.946 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.406 1.967 9.590 15.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.255 6.255 3 C 0.040 3.960 4 C -0.204 4.204 5 C -0.061 4.061 6 C -0.070 4.070 7 C -0.081 4.081 8 C -0.198 4.198 9 C -0.145 4.145 10 C -0.030 4.030 11 H 0.107 0.893 12 C -0.192 4.192 13 N -0.231 5.231 14 C -0.066 4.066 15 C -0.128 4.128 16 O -0.246 6.246 17 C 0.115 3.885 18 C -0.607 4.607 19 H 0.076 0.924 20 C -0.223 4.223 21 N -0.571 5.571 22 Si 0.926 3.074 23 H -0.213 1.213 24 H -0.198 1.198 25 H -0.191 1.191 26 C 0.029 3.971 27 H 0.107 0.893 28 C -0.184 4.184 29 H 0.049 0.951 30 H 0.140 0.860 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.141 0.859 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.123 0.877 41 H 0.094 0.906 42 H 0.126 0.874 43 H 0.036 0.964 44 H 0.010 0.990 45 H -0.040 1.040 46 H 0.058 0.942 47 H 0.086 0.914 48 H 0.072 0.928 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.080 2.268 9.593 14.830 hybrid contribution 0.244 -1.192 -1.023 1.590 sum 11.324 1.075 8.570 14.242 Atomic orbital electron populations 1.23047 0.77788 1.04588 1.00766 1.85895 1.22198 1.27676 1.89730 1.18959 0.92826 0.84062 1.00199 1.20875 0.98905 0.92928 1.07666 1.20661 0.93965 0.96139 0.95326 1.19935 0.93415 0.95888 0.97807 1.18964 0.96329 0.91228 1.01610 1.20193 0.91121 0.98163 1.10289 1.21490 0.89499 1.00859 1.02635 1.21877 0.94928 0.87264 0.98979 0.89334 1.21791 0.92372 1.03104 1.01907 1.62885 1.12018 1.45171 1.03047 1.22336 0.97712 0.96982 0.89521 1.24768 0.86621 1.02147 0.99236 1.88682 1.13441 1.54179 1.68281 1.20009 0.87961 0.92341 0.88217 1.21947 0.91244 1.07690 1.39860 0.92437 1.26966 1.06153 0.95629 0.93536 1.70910 1.27912 1.21369 1.36862 0.83102 0.71656 0.75368 0.77278 1.21317 1.19807 1.19120 1.20448 0.87085 0.90687 0.98915 0.89279 1.22113 0.99780 0.96272 1.00246 0.95135 0.86002 0.92174 0.87876 0.86979 0.85856 0.90223 0.89145 0.91252 0.90504 0.92374 0.87659 0.90609 0.87414 0.96399 0.98973 1.04004 0.94232 0.91409 0.92767 0.93292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.16 9.87 113.37 1.12 2.28 16 2 O -0.34 -13.81 10.50 -92.53 -0.97 -14.78 16 3 C 0.08 3.49 5.67 22.46 0.13 3.61 16 4 C -0.18 -7.91 6.89 22.32 0.15 -7.76 16 5 C -0.04 -1.70 5.26 22.32 0.12 -1.59 16 6 C -0.07 -2.39 2.93 -19.84 -0.06 -2.45 16 7 C -0.08 -2.67 3.22 -19.85 -0.06 -2.73 16 8 C -0.18 -6.65 9.38 22.42 0.21 -6.44 16 9 C -0.11 -2.61 4.37 29.82 0.13 -2.48 16 10 C 0.08 1.66 2.80 44.83 0.13 1.79 16 11 H 0.09 1.86 8.05 -2.39 -0.02 1.84 16 12 C -0.13 -2.09 9.19 71.98 0.66 -1.43 16 13 N -0.51 -13.20 4.88 -850.60 -4.15 -17.35 16 14 C 0.06 1.72 4.97 86.30 0.43 2.14 16 15 C -0.05 -1.82 4.70 71.98 0.34 -1.48 16 16 O -0.33 -13.76 1.94 -148.98 -0.29 -14.05 16 17 C 0.19 9.83 3.68 71.24 0.26 10.09 16 18 C -0.57 -30.64 6.93 25.60 0.18 -30.46 16 19 H 0.06 3.05 6.00 -2.91 -0.02 3.04 16 20 C -0.03 -1.39 5.45 84.66 0.46 -0.93 16 21 N -0.93 -56.18 13.65 21.45 0.29 -55.89 16 22 Si 1.10 48.99 29.91 68.60 2.05 51.04 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 25 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 26 C 0.14 4.18 2.80 44.21 0.12 4.31 16 27 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 28 C -0.13 -4.30 7.93 71.98 0.57 -3.73 16 29 H 0.03 1.28 8.08 -2.39 -0.02 1.26 16 30 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 31 H 0.06 1.93 7.18 -2.39 -0.02 1.92 16 32 H 0.10 4.58 6.30 -2.91 -0.02 4.56 16 33 H 0.11 4.62 5.92 -2.91 -0.02 4.60 16 34 H 0.12 4.18 8.06 -2.91 -0.02 4.15 16 35 H 0.08 1.96 5.87 -2.39 -0.01 1.94 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 1.04 8.14 -2.38 -0.02 1.03 16 38 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.06 0.89 6.34 -2.39 -0.02 0.87 16 40 H 0.11 2.32 5.93 -2.39 -0.01 2.30 16 41 H 0.08 2.20 6.68 -2.38 -0.02 2.19 16 42 H 0.11 3.77 1.89 -37.32 -0.07 3.70 16 43 H 0.02 0.68 7.89 -2.39 -0.02 0.66 16 44 H -0.01 -0.41 5.44 -2.39 -0.01 -0.42 16 45 H -0.06 -3.36 7.85 -2.39 -0.02 -3.38 16 46 H 0.25 15.61 7.25 -92.71 -0.67 14.93 16 47 H 0.07 2.49 4.14 -2.39 -0.01 2.48 16 48 H 0.05 2.11 3.66 -2.38 -0.01 2.10 16 49 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -64.39 339.61 2.82 -61.57 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 1.00 Total: 26.70 kcal Atomic # 6 Polarization: -42.14 SS G_CDS: 4.89 Total: -37.25 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -3.86 Total: -73.24 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -1.26 Total: -28.83 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.05 Total: 51.04 kcal Total: -64.39 2.82 -61.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339080769.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.287 kcal (2) G-P(sol) polarization free energy of solvation -64.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds