Wall clock time and date at job start Tue Mar 31 2020 14:10:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.35905 * 116.99850 * 2 1
4 4 C 1.38755 * 120.14883 * 359.97438 * 3 2 1
5 5 C 1.37909 * 119.81133 * 180.02562 * 4 3 2
6 6 C 1.38787 * 120.46055 * 359.97438 * 5 4 3
7 7 C 1.37883 * 119.80330 * 359.83491 * 6 5 4
8 8 C 1.38525 * 120.14269 * 179.97438 * 3 2 1
9 9 C 1.50728 * 121.65218 * 180.46245 * 7 6 5
10 10 C 1.52890 * 109.96651 * 343.04954 * 9 7 6
11 11 H 1.08997 * 109.62856 * 290.51223 * 10 9 7
12 12 C 1.53006 * 109.63297 * 170.11807 * 10 9 7
13 13 N 1.47173 * 108.48602 * 50.42444 * 10 9 7
14 14 C 1.46906 * 110.99775 * 52.13539 * 13 10 9
15 15 C 1.53000 * 109.47174 * 69.32154 * 14 13 10
16 16 O 1.42905 * 109.47099 * 27.44767 * 15 14 13
17 17 C 1.42901 * 114.00132 * 179.08220 * 16 15 14
18 18 C 1.50698 * 109.46884 * 185.67522 * 17 16 15
19 19 H 1.07988 * 120.00335 * 0.02562 * 18 17 16
20 20 C 1.37875 * 119.99607 * 180.02562 * 18 17 16
21 21 N 1.31518 * 120.00376 * 180.02562 * 20 18 17
22 22 Si 1.86799 * 120.00113 * 359.97438 * 20 18 17
23 23 H 1.48506 * 109.47369 * 89.99911 * 22 20 18
24 24 H 1.48499 * 109.47228 * 210.00054 * 22 20 18
25 25 H 1.48501 * 109.47489 * 330.00218 * 22 20 18
26 26 C 1.46615 * 110.25475 * 288.71350 * 13 10 9
27 27 H 1.09003 * 109.24214 * 292.29599 * 26 13 10
28 28 C 1.53007 * 109.27127 * 172.80617 * 26 13 10
29 29 H 1.08997 * 109.47615 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.47233 * 300.00768 * 1 2 3
31 31 H 1.09008 * 109.46847 * 60.00046 * 1 2 3
32 32 H 1.07997 * 120.09346 * 0.03850 * 4 3 2
33 33 H 1.07994 * 119.77404 * 179.97438 * 5 4 3
34 34 H 1.08005 * 119.84614 * 0.05382 * 8 3 2
35 35 H 1.09003 * 109.38863 * 103.20246 * 9 7 6
36 36 H 1.08999 * 109.39379 * 222.89356 * 9 7 6
37 37 H 1.08997 * 109.46940 * 72.70823 * 12 10 9
38 38 H 1.08994 * 109.46854 * 192.70812 * 12 10 9
39 39 H 1.08997 * 109.46784 * 312.70474 * 12 10 9
40 40 H 1.08994 * 109.46829 * 189.32348 * 14 13 10
41 41 H 1.09003 * 109.47056 * 309.32788 * 14 13 10
42 42 H 1.09000 * 109.46801 * 147.44437 * 15 14 13
43 43 H 1.09001 * 109.47582 * 267.44642 * 15 14 13
44 44 H 1.08996 * 109.46816 * 305.68088 * 17 16 15
45 45 H 1.09007 * 109.46727 * 65.67735 * 17 16 15
46 46 H 0.96993 * 120.00245 * 179.97438 * 21 20 18
47 47 H 1.08996 * 109.47195 * 298.98546 * 28 26 13
48 48 H 1.08998 * 109.46749 * 178.98033 * 28 26 13
49 49 H 1.09003 * 109.46906 * 58.98269 * 28 26 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0459 1.2109 0.0000
4 6 1.2932 2.3766 -0.0005
5 6 1.9265 3.6017 -0.0011
6 6 3.3123 3.6773 -0.0005
7 6 4.0618 2.5200 0.0040
8 6 3.4291 1.2869 0.0005
9 6 5.5687 2.5536 0.0151
10 6 6.0630 3.9398 -0.3990
11 1 5.8541 4.1023 -1.4564
12 6 7.5693 4.0437 -0.1508
13 7 5.3580 4.9474 0.4094
14 6 5.4643 4.6411 1.8422
15 6 6.9076 4.8533 2.3034
16 8 7.5335 5.8341 1.4737
17 6 8.8856 6.1234 1.8345
18 6 9.3983 7.2614 0.9901
19 1 8.7558 7.7183 0.2520
20 6 10.6877 7.7192 1.1597
21 7 11.1351 8.7127 0.4232
22 14 11.7988 6.9294 2.4368
23 1 12.5444 5.8047 1.8167
24 1 12.7606 7.9387 2.9483
25 1 10.9748 6.4168 3.5609
26 6 3.9548 5.0398 -0.0055
27 1 3.9043 5.4577 -1.0110
28 6 3.2018 5.9566 0.9608
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3634 0.5139 0.8899
31 1 -0.3633 0.5139 -0.8901
32 1 0.2145 2.3246 -0.0003
33 1 1.3400 4.5085 -0.0019
34 1 4.0172 0.3810 0.0001
35 1 5.9283 2.3260 1.0186
36 1 5.9524 1.8092 -0.6825
37 1 8.1017 3.4494 -0.8933
38 1 7.8793 5.0857 -0.2293
39 1 7.7996 3.6702 0.8469
40 1 4.8026 5.2998 2.4046
41 1 5.1767 3.6039 2.0143
42 1 6.9116 5.1965 3.3380
43 1 7.4544 3.9132 2.2303
44 1 8.9287 6.4037 2.8870
45 1 9.5029 5.2406 1.6680
46 1 12.0421 9.0350 0.5428
47 1 3.2429 5.5372 1.9660
48 1 2.1622 6.0420 0.6448
49 1 3.6642 6.9437 0.9597
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000339080771.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:10:43
Heat of formation + Delta-G solvation = -22.089082 kcal
Electronic energy + Delta-G solvation = -28074.209446 eV
Core-core repulsion = 24389.020392 eV
Total energy + Delta-G solvation = -3685.189053 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 2.00 seconds
Orbital eigenvalues (eV)
-41.05086 -39.54445 -37.43405 -35.99484 -34.14129 -32.62370 -31.34763 -30.79581
-29.37369 -28.15100 -27.39103 -27.20131 -26.18908 -23.45898 -22.26922 -21.73682
-21.41407 -21.00595 -18.93046 -17.88520 -16.90849 -16.70414 -16.51969 -16.00471
-15.72973 -15.53843 -14.66890 -14.57649 -14.36843 -14.31097 -13.99544 -13.91487
-13.30099 -13.14017 -12.80113 -12.65351 -12.61553 -12.29056 -12.26659 -12.15486
-11.99245 -11.60063 -11.49524 -11.32653 -11.10292 -11.00537 -10.89582 -10.72366
-10.60675 -10.40316 -10.25959 -9.87271 -9.78713 -9.07512 -8.91283 -8.66236
-8.20619 -8.19705 -7.90968 -6.05213 -4.02953 1.16880 1.27440 3.01093
3.28039 3.35387 3.36791 3.55776 4.07771 4.40749 4.54204 4.61855
4.75213 4.77916 4.80790 4.86903 4.98521 5.02550 5.09906 5.12250
5.24844 5.26390 5.28953 5.40231 5.46186 5.52867 5.58396 5.69856
5.74480 5.86294 5.89806 5.94170 6.02422 6.05952 6.08946 6.15138
6.21049 6.27884 6.30738 6.43077 6.49788 6.64704 6.66946 6.72051
7.07569 7.18568 7.30672 7.40269 7.53879 7.68880 8.15375 8.76636
9.09574 9.55413 11.07866
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.029461 B = 0.002879 C = 0.002773
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 950.196986 B = 9723.140856 C =10095.401318
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.320 6.320
3 C 0.121 3.879
4 C -0.212 4.212
5 C -0.074 4.074
6 C -0.140 4.140
7 C -0.032 4.032
8 C -0.153 4.153
9 C -0.119 4.119
10 C 0.090 3.910
11 H 0.079 0.921
12 C -0.162 4.162
13 N -0.489 5.489
14 C 0.046 3.954
15 C 0.056 3.944
16 O -0.344 6.344
17 C 0.161 3.839
18 C -0.510 4.510
19 H 0.084 0.916
20 C 0.071 3.929
21 N -0.897 5.897
22 Si 0.873 3.127
23 H -0.275 1.275
24 H -0.284 1.284
25 H -0.267 1.267
26 C 0.120 3.880
27 H 0.093 0.907
28 C -0.147 4.147
29 H 0.098 0.902
30 H 0.054 0.946
31 H 0.054 0.946
32 H 0.124 0.876
33 H 0.127 0.873
34 H 0.127 0.873
35 H 0.082 0.918
36 H 0.080 0.920
37 H 0.037 0.963
38 H 0.116 0.884
39 H 0.058 0.942
40 H 0.081 0.919
41 H 0.043 0.957
42 H 0.036 0.964
43 H 0.041 0.959
44 H -0.003 1.003
45 H -0.004 1.004
46 H 0.265 0.735
47 H 0.059 0.941
48 H 0.057 0.943
49 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.221 -15.781 0.377 26.448
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.234 6.234
3 C 0.076 3.924
4 C -0.231 4.231
5 C -0.092 4.092
6 C -0.142 4.142
7 C -0.033 4.033
8 C -0.172 4.172
9 C -0.157 4.157
10 C -0.018 4.018
11 H 0.098 0.902
12 C -0.219 4.219
13 N -0.210 5.210
14 C -0.082 4.082
15 C -0.022 4.022
16 O -0.262 6.262
17 C 0.086 3.914
18 C -0.548 4.548
19 H 0.102 0.898
20 C -0.130 4.130
21 N -0.536 5.536
22 Si 0.700 3.300
23 H -0.201 1.201
24 H -0.210 1.210
25 H -0.192 1.192
26 C 0.011 3.989
27 H 0.110 0.890
28 C -0.205 4.205
29 H 0.116 0.884
30 H 0.072 0.928
31 H 0.073 0.927
32 H 0.142 0.858
33 H 0.144 0.856
34 H 0.145 0.855
35 H 0.100 0.900
36 H 0.098 0.902
37 H 0.056 0.944
38 H 0.134 0.866
39 H 0.076 0.924
40 H 0.099 0.901
41 H 0.061 0.939
42 H 0.054 0.946
43 H 0.058 0.942
44 H 0.015 0.985
45 H 0.013 0.987
46 H 0.075 0.925
47 H 0.078 0.922
48 H 0.076 0.924
49 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -20.817 -15.268 0.114 25.816
hybrid contribution 0.047 -1.375 1.059 1.736
sum -20.770 -16.643 1.173 26.642
Atomic orbital electron populations
1.23020 0.78586 1.03743 1.01285 1.86056 1.21224 1.27153 1.88978
1.18913 0.92264 0.84038 0.97150 1.21142 0.99726 0.92442 1.09746
1.20952 0.93943 0.97006 0.97300 1.20486 0.93717 0.96566 1.03411
1.19468 0.95770 0.91443 0.96591 1.20331 0.91274 0.98101 1.07499
1.21329 0.90403 1.01004 1.03010 1.21684 0.95934 0.86747 0.97468
0.90234 1.22602 0.92170 1.06550 1.00556 1.62660 1.09228 1.46316
1.02841 1.22418 0.96726 0.99232 0.89784 1.22535 0.92732 0.93069
0.93838 1.88221 1.27492 1.58117 1.52390 1.20571 0.80050 0.95506
0.95311 1.20890 0.98208 1.15135 1.20534 0.89808 1.24772 0.97505
0.94894 0.95877 1.69877 1.17277 1.26501 1.39944 0.86899 0.81054
0.79495 0.82552 1.20074 1.21004 1.19222 1.20626 0.87778 0.90251
1.00246 0.88952 1.22037 0.99133 1.00381 0.98907 0.88389 0.92754
0.92744 0.85765 0.85565 0.85523 0.89978 0.90188 0.94359 0.86582
0.92357 0.90066 0.93933 0.94599 0.94155 0.98509 0.98667 0.92533
0.92241 0.92414 0.90797
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.19 9.82 101.05 0.99 1.18 16
2 O -0.32 -3.42 10.50 -19.44 -0.20 -3.63 16
3 C 0.12 1.40 6.68 -39.28 -0.26 1.13 16
4 C -0.21 -2.17 9.04 -39.51 -0.36 -2.53 16
5 C -0.07 -0.78 9.07 -39.50 -0.36 -1.14 16
6 C -0.14 -1.70 5.09 -104.58 -0.53 -2.23 16
7 C -0.03 -0.40 5.13 -104.61 -0.54 -0.94 16
8 C -0.15 -1.85 9.59 -39.34 -0.38 -2.23 16
9 C -0.12 -1.49 4.45 -27.93 -0.12 -1.61 16
10 C 0.09 1.32 2.80 -67.62 -0.19 1.13 16
11 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16
12 C -0.16 -2.73 7.43 37.16 0.28 -2.45 16
13 N -0.49 -7.43 4.07 -220.20 -0.90 -8.32 16
14 C 0.05 0.68 4.61 -3.82 -0.02 0.66 16
15 C 0.06 0.96 5.25 37.16 0.20 1.15 16
16 O -0.34 -7.48 6.21 -35.23 -0.22 -7.70 16
17 C 0.16 3.96 4.13 36.00 0.15 4.10 16
18 C -0.51 -14.78 9.99 -34.44 -0.34 -15.13 16
19 H 0.08 2.68 8.06 -52.49 -0.42 2.26 16
20 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16
21 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16
22 Si 0.87 21.41 27.47 -169.99 -4.67 16.74 16
23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16
25 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16
26 C 0.12 1.54 2.84 -69.05 -0.20 1.34 16
27 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16
28 C -0.15 -1.66 8.11 37.16 0.30 -1.36 16
29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16
30 H 0.05 0.30 7.67 -51.93 -0.40 -0.09 16
31 H 0.05 0.30 7.67 -51.92 -0.40 -0.09 16
32 H 0.12 0.98 6.32 -52.49 -0.33 0.65 16
33 H 0.13 1.10 6.41 -52.49 -0.34 0.76 16
34 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16
35 H 0.08 1.03 6.49 -51.93 -0.34 0.69 16
36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16
37 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16
38 H 0.12 2.45 5.63 -51.93 -0.29 2.16 16
39 H 0.06 0.97 4.36 -51.93 -0.23 0.74 16
40 H 0.08 1.13 5.45 -51.93 -0.28 0.85 16
41 H 0.04 0.58 5.26 -51.93 -0.27 0.31 16
42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16
43 H 0.04 0.65 5.84 -51.93 -0.30 0.35 16
44 H 0.00 -0.07 7.19 -51.93 -0.37 -0.44 16
45 H 0.00 -0.10 7.57 -51.93 -0.39 -0.50 16
46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16
47 H 0.06 0.67 6.09 -51.93 -0.32 0.35 16
48 H 0.06 0.52 6.47 -51.93 -0.34 0.19 16
49 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
LS Contribution 362.21 15.07 5.46 5.46
Total: -1.00 -31.77 362.21 -8.80 -40.57
By element:
Atomic # 1 Polarization: 8.22 SS G_CDS: -7.57 Total: 0.66 kcal
Atomic # 6 Polarization: -15.48 SS G_CDS: -1.48 Total: -16.96 kcal
Atomic # 7 Polarization: -35.02 SS G_CDS: -0.12 Total: -35.14 kcal
Atomic # 8 Polarization: -10.90 SS G_CDS: -0.42 Total: -11.32 kcal
Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal
Total LS contribution 5.46 Total: 5.46 kcal
Total: -31.77 -8.80 -40.57 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000339080771.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.483 kcal
(2) G-P(sol) polarization free energy of solvation -31.770 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.287 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.089 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.00 seconds