Wall clock time and date at job start Tue Mar 31 2020 14:10:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.35905 * 116.99850 * 2 1
4 4 C 1.38755 * 120.14883 * 359.97438 * 3 2 1
5 5 C 1.37909 * 119.81133 * 180.02562 * 4 3 2
6 6 C 1.38787 * 120.46055 * 359.97438 * 5 4 3
7 7 C 1.37883 * 119.80330 * 359.83491 * 6 5 4
8 8 C 1.38525 * 120.14269 * 179.97438 * 3 2 1
9 9 C 1.50728 * 121.65218 * 180.46245 * 7 6 5
10 10 C 1.52890 * 109.96651 * 343.04954 * 9 7 6
11 11 H 1.08997 * 109.62856 * 290.51223 * 10 9 7
12 12 C 1.53006 * 109.63297 * 170.11807 * 10 9 7
13 13 N 1.47173 * 108.48602 * 50.42444 * 10 9 7
14 14 C 1.46906 * 110.99775 * 52.13539 * 13 10 9
15 15 C 1.53000 * 109.47174 * 69.32154 * 14 13 10
16 16 O 1.42905 * 109.47099 * 27.44767 * 15 14 13
17 17 C 1.42901 * 114.00132 * 179.08220 * 16 15 14
18 18 C 1.50698 * 109.46884 * 185.67522 * 17 16 15
19 19 H 1.07988 * 120.00335 * 0.02562 * 18 17 16
20 20 C 1.37875 * 119.99607 * 180.02562 * 18 17 16
21 21 N 1.31518 * 120.00376 * 180.02562 * 20 18 17
22 22 Si 1.86799 * 120.00113 * 359.97438 * 20 18 17
23 23 H 1.48506 * 109.47369 * 89.99911 * 22 20 18
24 24 H 1.48499 * 109.47228 * 210.00054 * 22 20 18
25 25 H 1.48501 * 109.47489 * 330.00218 * 22 20 18
26 26 C 1.46615 * 110.25475 * 288.71350 * 13 10 9
27 27 H 1.09003 * 109.24214 * 292.29599 * 26 13 10
28 28 C 1.53007 * 109.27127 * 172.80617 * 26 13 10
29 29 H 1.08997 * 109.47615 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.47233 * 300.00768 * 1 2 3
31 31 H 1.09008 * 109.46847 * 60.00046 * 1 2 3
32 32 H 1.07997 * 120.09346 * 0.03850 * 4 3 2
33 33 H 1.07994 * 119.77404 * 179.97438 * 5 4 3
34 34 H 1.08005 * 119.84614 * 0.05382 * 8 3 2
35 35 H 1.09003 * 109.38863 * 103.20246 * 9 7 6
36 36 H 1.08999 * 109.39379 * 222.89356 * 9 7 6
37 37 H 1.08997 * 109.46940 * 72.70823 * 12 10 9
38 38 H 1.08994 * 109.46854 * 192.70812 * 12 10 9
39 39 H 1.08997 * 109.46784 * 312.70474 * 12 10 9
40 40 H 1.08994 * 109.46829 * 189.32348 * 14 13 10
41 41 H 1.09003 * 109.47056 * 309.32788 * 14 13 10
42 42 H 1.09000 * 109.46801 * 147.44437 * 15 14 13
43 43 H 1.09001 * 109.47582 * 267.44642 * 15 14 13
44 44 H 1.08996 * 109.46816 * 305.68088 * 17 16 15
45 45 H 1.09007 * 109.46727 * 65.67735 * 17 16 15
46 46 H 0.96993 * 120.00245 * 179.97438 * 21 20 18
47 47 H 1.08996 * 109.47195 * 298.98546 * 28 26 13
48 48 H 1.08998 * 109.46749 * 178.98033 * 28 26 13
49 49 H 1.09003 * 109.46906 * 58.98269 * 28 26 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0459 1.2109 0.0000
4 6 1.2932 2.3766 -0.0005
5 6 1.9265 3.6017 -0.0011
6 6 3.3123 3.6773 -0.0005
7 6 4.0618 2.5200 0.0040
8 6 3.4291 1.2869 0.0005
9 6 5.5687 2.5536 0.0151
10 6 6.0630 3.9398 -0.3990
11 1 5.8541 4.1023 -1.4564
12 6 7.5693 4.0437 -0.1508
13 7 5.3580 4.9474 0.4094
14 6 5.4643 4.6411 1.8422
15 6 6.9076 4.8533 2.3034
16 8 7.5335 5.8341 1.4737
17 6 8.8856 6.1234 1.8345
18 6 9.3983 7.2614 0.9901
19 1 8.7558 7.7183 0.2520
20 6 10.6877 7.7192 1.1597
21 7 11.1351 8.7127 0.4232
22 14 11.7988 6.9294 2.4368
23 1 12.5444 5.8047 1.8167
24 1 12.7606 7.9387 2.9483
25 1 10.9748 6.4168 3.5609
26 6 3.9548 5.0398 -0.0055
27 1 3.9043 5.4577 -1.0110
28 6 3.2018 5.9566 0.9608
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3634 0.5139 0.8899
31 1 -0.3633 0.5139 -0.8901
32 1 0.2145 2.3246 -0.0003
33 1 1.3400 4.5085 -0.0019
34 1 4.0172 0.3810 0.0001
35 1 5.9283 2.3260 1.0186
36 1 5.9524 1.8092 -0.6825
37 1 8.1017 3.4494 -0.8933
38 1 7.8793 5.0857 -0.2293
39 1 7.7996 3.6702 0.8469
40 1 4.8026 5.2998 2.4046
41 1 5.1767 3.6039 2.0143
42 1 6.9116 5.1965 3.3380
43 1 7.4544 3.9132 2.2303
44 1 8.9287 6.4037 2.8870
45 1 9.5029 5.2406 1.6680
46 1 12.0421 9.0350 0.5428
47 1 3.2429 5.5372 1.9660
48 1 2.1622 6.0420 0.6448
49 1 3.6642 6.9437 0.9597
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000339080771.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:10:41
Heat of formation + Delta-G solvation = -41.941666 kcal
Electronic energy + Delta-G solvation = -28075.070318 eV
Core-core repulsion = 24389.020392 eV
Total energy + Delta-G solvation = -3686.049926 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 1.20 seconds
Orbital eigenvalues (eV)
-42.00940 -40.42917 -38.73446 -37.20441 -35.14671 -34.78148 -32.45933 -31.86142
-30.53203 -29.58463 -28.80477 -28.01766 -27.15598 -24.50231 -23.89076 -23.25294
-22.37616 -22.05243 -20.02473 -18.96373 -18.65037 -17.93305 -17.53782 -17.07767
-16.78234 -16.63445 -16.18251 -15.97927 -15.58859 -15.41017 -15.10766 -14.86130
-14.61716 -14.31154 -14.14698 -13.87907 -13.81410 -13.53286 -13.39152 -13.11142
-13.02893 -12.94206 -12.69349 -12.55914 -12.49446 -12.27139 -12.13455 -11.91963
-11.81897 -11.77740 -11.55369 -11.37955 -11.25720 -11.10029 -10.82028 -9.89316
-9.75720 -9.06526 -8.99184 -8.29974 -6.35088 0.32773 0.42025 1.35214
1.37568 1.48119 2.33397 2.35050 2.70697 2.93207 3.02877 3.38303
3.69549 3.79714 3.88771 3.93116 4.01457 4.09466 4.22036 4.25386
4.34705 4.38776 4.40011 4.44679 4.53258 4.57744 4.59486 4.64080
4.72204 4.73659 4.76987 4.80824 4.86570 4.95470 5.03762 5.04885
5.08804 5.12160 5.17494 5.28624 5.32520 5.34862 5.42528 5.54758
5.65711 5.79770 5.89998 6.03927 6.30275 6.35799 6.44955 6.70296
6.93763 7.29447 8.87122
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.029461 B = 0.002879 C = 0.002773
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 950.196986 B = 9723.140856 C =10095.401318
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 O -0.338 6.338
3 C 0.115 3.885
4 C -0.209 4.209
5 C -0.072 4.072
6 C -0.151 4.151
7 C -0.043 4.043
8 C -0.167 4.167
9 C -0.109 4.109
10 C 0.093 3.907
11 H 0.072 0.928
12 C -0.154 4.154
13 N -0.515 5.515
14 C 0.055 3.945
15 C 0.047 3.953
16 O -0.359 6.359
17 C 0.176 3.824
18 C -0.526 4.526
19 H 0.031 0.969
20 C 0.011 3.989
21 N -0.945 5.945
22 Si 0.950 3.050
23 H -0.262 1.262
24 H -0.278 1.278
25 H -0.248 1.248
26 C 0.121 3.879
27 H 0.084 0.916
28 C -0.142 4.142
29 H 0.117 0.883
30 H 0.064 0.936
31 H 0.064 0.936
32 H 0.151 0.849
33 H 0.147 0.853
34 H 0.130 0.870
35 H 0.083 0.917
36 H 0.089 0.911
37 H 0.046 0.954
38 H 0.071 0.929
39 H 0.061 0.939
40 H 0.088 0.912
41 H 0.058 0.942
42 H 0.045 0.955
43 H 0.053 0.947
44 H 0.001 0.999
45 H 0.006 0.994
46 H 0.270 0.730
47 H 0.061 0.939
48 H 0.083 0.917
49 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.874 -18.018 1.973 29.185
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 O -0.252 6.252
3 C 0.070 3.930
4 C -0.227 4.227
5 C -0.091 4.091
6 C -0.153 4.153
7 C -0.043 4.043
8 C -0.186 4.186
9 C -0.147 4.147
10 C -0.015 4.015
11 H 0.091 0.909
12 C -0.211 4.211
13 N -0.237 5.237
14 C -0.073 4.073
15 C -0.030 4.030
16 O -0.277 6.277
17 C 0.100 3.900
18 C -0.564 4.564
19 H 0.050 0.950
20 C -0.187 4.187
21 N -0.585 5.585
22 Si 0.772 3.228
23 H -0.186 1.186
24 H -0.203 1.203
25 H -0.171 1.171
26 C 0.012 3.988
27 H 0.102 0.898
28 C -0.199 4.199
29 H 0.135 0.865
30 H 0.083 0.917
31 H 0.083 0.917
32 H 0.168 0.832
33 H 0.165 0.835
34 H 0.148 0.852
35 H 0.101 0.899
36 H 0.107 0.893
37 H 0.065 0.935
38 H 0.089 0.911
39 H 0.079 0.921
40 H 0.106 0.894
41 H 0.076 0.924
42 H 0.063 0.937
43 H 0.071 0.929
44 H 0.019 0.981
45 H 0.023 0.977
46 H 0.079 0.921
47 H 0.080 0.920
48 H 0.102 0.898
49 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -22.508 -17.520 1.708 28.574
hybrid contribution 0.407 -0.677 0.453 0.911
sum -22.101 -18.197 2.162 28.710
Atomic orbital electron populations
1.23326 0.76451 1.05487 1.02249 1.86038 1.23483 1.26885 1.88798
1.19072 0.92307 0.84873 0.96763 1.21425 1.01059 0.91717 1.08513
1.21181 0.93364 0.98132 0.96387 1.20429 0.94534 0.95746 1.04553
1.19446 0.95474 0.91889 0.97538 1.20417 0.92018 0.98005 1.08122
1.21168 0.90906 0.99420 1.03199 1.21549 0.94479 0.88302 0.97176
0.90938 1.22427 0.94075 1.03589 1.01007 1.62594 1.10996 1.46975
1.03168 1.22350 0.95067 1.00240 0.89651 1.22838 0.93972 0.92437
0.93759 1.88236 1.26136 1.59723 1.53627 1.20209 0.81755 0.93990
0.94090 1.21110 0.98207 1.16674 1.20367 0.95040 1.25783 0.99201
0.95321 0.98360 1.70041 1.18109 1.28307 1.42075 0.85687 0.78672
0.78758 0.79687 1.18645 1.20302 1.17111 1.20598 0.86723 0.91280
1.00149 0.89818 1.21996 1.00235 0.98913 0.98725 0.86461 0.91704
0.91742 0.83175 0.83514 0.85241 0.89859 0.89255 0.93488 0.91072
0.92090 0.89398 0.92415 0.93702 0.92900 0.98131 0.97665 0.92138
0.91999 0.89841 0.92583
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.19 9.82 113.37 1.11 1.30 16
2 O -0.34 -6.48 10.50 -92.48 -0.97 -7.45 16
3 C 0.11 2.41 6.68 22.46 0.15 2.56 16
4 C -0.21 -3.67 9.04 22.32 0.20 -3.46 16
5 C -0.07 -1.35 9.07 22.32 0.20 -1.15 16
6 C -0.15 -3.44 5.09 -19.84 -0.10 -3.54 16
7 C -0.04 -1.02 5.13 -19.85 -0.10 -1.12 16
8 C -0.17 -3.79 9.59 22.42 0.22 -3.58 16
9 C -0.11 -2.61 4.45 29.82 0.13 -2.48 16
10 C 0.09 2.76 2.80 44.83 0.13 2.88 16
11 H 0.07 2.20 8.05 -2.39 -0.02 2.18 16
12 C -0.15 -5.29 7.43 71.98 0.53 -4.76 16
13 N -0.52 -15.70 4.07 -850.58 -3.46 -19.16 16
14 C 0.05 1.54 4.61 86.30 0.40 1.94 16
15 C 0.05 1.57 5.25 71.98 0.38 1.94 16
16 O -0.36 -15.89 6.21 -148.98 -0.93 -16.81 16
17 C 0.18 8.66 4.13 71.24 0.29 8.96 16
18 C -0.53 -31.72 9.99 25.60 0.26 -31.46 16
19 H 0.03 2.16 8.06 -2.92 -0.02 2.13 16
20 C 0.01 0.63 5.47 84.65 0.46 1.09 16
21 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16
22 Si 0.95 43.95 27.47 68.60 1.88 45.84 16
23 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16
24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16
25 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16
26 C 0.12 3.04 2.84 44.21 0.13 3.16 16
27 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16
28 C -0.14 -3.02 8.11 71.98 0.58 -2.44 16
29 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16
30 H 0.06 0.52 7.67 -2.39 -0.02 0.50 16
31 H 0.06 0.52 7.67 -2.38 -0.02 0.50 16
32 H 0.15 1.78 6.32 -2.91 -0.02 1.76 16
33 H 0.15 2.05 6.41 -2.91 -0.02 2.03 16
34 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16
35 H 0.08 1.97 6.49 -2.39 -0.02 1.95 16
36 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16
37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16
38 H 0.07 3.15 5.63 -2.39 -0.01 3.14 16
39 H 0.06 2.01 4.36 -2.39 -0.01 2.00 16
40 H 0.09 2.35 5.45 -2.39 -0.01 2.34 16
41 H 0.06 1.47 5.26 -2.39 -0.01 1.46 16
42 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16
43 H 0.05 1.64 5.84 -2.39 -0.01 1.62 16
44 H 0.00 0.05 7.19 -2.39 -0.02 0.03 16
45 H 0.01 0.27 7.57 -2.38 -0.02 0.25 16
46 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16
47 H 0.06 1.29 6.09 -2.39 -0.01 1.27 16
48 H 0.08 1.32 6.47 -2.39 -0.02 1.30 16
49 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16
Total: -1.00 -71.45 362.21 2.69 -68.76
By element:
Atomic # 1 Polarization: 17.77 SS G_CDS: 0.89 Total: 18.66 kcal
Atomic # 6 Polarization: -35.12 SS G_CDS: 4.97 Total: -30.15 kcal
Atomic # 7 Polarization: -75.69 SS G_CDS: -3.16 Total: -78.85 kcal
Atomic # 8 Polarization: -22.36 SS G_CDS: -1.90 Total: -24.26 kcal
Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.84 kcal
Total: -71.45 2.69 -68.76 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000339080771.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.820 kcal
(2) G-P(sol) polarization free energy of solvation -71.450 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.629 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.762 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.942 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.20 seconds