Wall clock time and date at job start Tue Mar 31 2020 12:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47424 * 2 1 4 4 C 1.53006 * 109.47032 * 119.99797 * 2 1 3 5 5 N 1.46900 * 109.47078 * 304.99823 * 4 2 1 6 6 C 1.46896 * 111.00195 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47382 * 179.97438 * 6 5 4 8 8 C 1.38284 * 119.97210 * 269.97968 * 7 6 5 9 9 C 1.38250 * 120.10839 * 180.02562 * 8 7 6 10 10 C 1.38161 * 120.05581 * 359.68103 * 9 8 7 11 11 C 1.38710 * 119.94432 * 0.61525 * 10 9 8 12 12 O 1.35900 * 120.05544 * 179.67631 * 11 10 9 13 13 C 1.42898 * 117.00172 * 359.72769 * 12 11 10 14 14 C 1.52997 * 109.47319 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00362 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99850 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47052 * 89.99717 * 19 17 15 21 21 H 1.48495 * 109.47307 * 209.99656 * 19 17 15 22 22 H 1.48500 * 109.47143 * 330.00164 * 19 17 15 23 23 C 1.38129 * 119.97079 * 90.00085 * 7 6 5 24 24 C 1.53000 * 109.47424 * 239.99565 * 2 1 3 25 25 C 1.52997 * 117.50253 * 128.74800 * 24 2 1 26 26 C 1.52998 * 117.49680 * 60.08733 * 24 2 1 27 27 H 1.09003 * 109.47021 * 300.00723 * 1 2 3 28 28 H 1.09001 * 109.46675 * 60.00025 * 1 2 3 29 29 H 1.08998 * 109.47444 * 180.02562 * 1 2 3 30 30 H 0.96703 * 114.00180 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47046 * 184.99492 * 4 2 1 32 32 H 1.09006 * 109.46798 * 64.99761 * 4 2 1 33 33 H 1.00901 * 111.00271 * 303.95429 * 5 4 2 34 34 H 1.09005 * 109.46944 * 59.99947 * 6 5 4 35 35 H 1.09002 * 109.47398 * 300.00389 * 6 5 4 36 36 H 1.07994 * 119.94418 * 0.02562 * 8 7 6 37 37 H 1.08002 * 119.97138 * 179.97438 * 9 8 7 38 38 H 1.08006 * 120.02996 * 180.29325 * 10 9 8 39 39 H 1.09002 * 109.47259 * 300.00149 * 13 12 11 40 40 H 1.09001 * 109.47074 * 60.00171 * 13 12 11 41 41 H 1.09002 * 109.47153 * 300.00307 * 14 13 12 42 42 H 1.08998 * 109.47533 * 59.99936 * 14 13 12 43 43 H 0.96994 * 119.99814 * 180.02562 * 18 17 15 44 44 H 1.07998 * 120.02418 * 0.02613 * 23 7 6 45 45 H 1.09000 * 115.55192 * 274.42339 * 24 2 1 46 46 H 1.09005 * 117.49264 * 0.02562 * 25 24 2 47 47 H 1.08999 * 117.50205 * 145.02391 * 25 24 2 48 48 H 1.09002 * 117.50041 * 214.98235 * 26 24 2 49 49 H 1.09005 * 117.49809 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.4542 -0.1019 2.4457 6 6 1.9220 -0.7703 3.6672 7 6 1.3020 -0.1087 4.8709 8 6 1.9437 0.9522 5.4832 9 6 1.3777 1.5610 6.5879 10 6 0.1658 1.1147 7.0788 11 6 -0.4769 0.0467 6.4702 12 8 -1.6658 -0.3983 6.9553 13 6 -2.1934 0.2767 8.0989 14 6 -3.5270 -0.3593 8.4963 15 6 -4.0838 0.3529 9.7020 16 1 -3.5410 1.1771 10.1407 17 6 -5.2866 -0.0469 10.2445 18 7 -5.7728 0.5750 11.2964 19 14 -6.2266 -1.4711 9.4844 20 1 -5.7999 -2.7424 10.1224 21 1 -7.6827 -1.2739 9.6990 22 1 -5.9443 -1.5293 8.0276 23 6 0.0934 -0.5628 5.3618 24 6 2.0400 -0.7213 -1.2492 25 6 3.0764 0.0037 -2.1100 26 6 1.6375 -0.1485 -2.6095 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 2.9704 1.4236 -0.0004 31 1 3.1262 -0.6444 1.2952 32 1 1.7515 -1.7715 1.2057 33 1 1.6533 0.8869 2.4753 34 1 3.0076 -0.6942 3.7301 35 1 1.6325 -1.8209 3.6402 36 1 2.8885 1.3058 5.0977 37 1 1.8810 2.3891 7.0646 38 1 -0.2783 1.5936 7.9390 39 1 -1.4895 0.1932 8.9270 40 1 -2.3500 1.3286 7.8598 41 1 -4.2307 -0.2754 7.6681 42 1 -3.3710 -1.4113 8.7353 43 1 -6.6188 0.2935 11.6782 44 1 -0.4070 -1.3919 4.8837 45 1 2.1253 -1.8047 -1.1646 46 1 3.3951 0.9945 -1.7862 47 1 3.8432 -0.6026 -2.5921 48 1 1.4583 -0.8549 -3.4201 49 1 1.0096 0.7425 -2.6146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344454398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:09 Heat of formation + Delta-G solvation = -49.032987 kcal Electronic energy + Delta-G solvation = -25759.370421 eV Core-core repulsion = 22073.012993 eV Total energy + Delta-G solvation = -3686.357428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.00306 -39.71429 -37.66149 -36.09088 -35.04818 -33.34045 -32.14915 -31.10996 -30.37682 -29.34165 -26.89025 -25.42933 -24.65700 -22.74253 -22.51509 -22.38645 -21.39260 -20.39414 -20.07709 -17.81852 -17.36668 -16.78691 -16.41597 -16.13246 -15.70669 -15.48570 -15.43070 -15.14420 -14.48509 -14.37339 -14.15519 -13.74750 -13.50970 -13.13352 -12.98119 -12.80903 -12.60877 -12.54378 -12.41560 -12.23467 -12.00566 -11.74657 -11.61287 -11.48302 -11.39319 -11.34509 -10.96404 -10.81418 -10.66401 -10.48048 -10.19218 -10.16624 -9.98558 -9.80860 -9.33975 -8.83560 -8.62511 -8.60555 -7.89678 -6.13155 -4.14050 1.40944 1.63802 3.28163 3.29107 3.36380 3.42246 3.59295 3.76074 3.88872 4.08887 4.36081 4.39624 4.40698 4.49033 4.67679 4.75063 4.82311 4.88770 4.95226 5.10471 5.19106 5.20998 5.24775 5.27763 5.35703 5.41807 5.43046 5.46667 5.56939 5.65488 5.68735 5.76962 5.81980 5.82162 5.93044 5.96908 6.14869 6.17194 6.42363 6.51400 6.63041 6.63838 6.66464 6.90455 7.11506 7.11944 7.24013 7.26179 7.63073 7.93476 8.39114 8.87486 9.47168 10.99328 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018812 B = 0.002040 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.020895 B =13723.587103 C =14705.725237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.163 3.837 3 O -0.555 6.555 4 C 0.038 3.962 5 N -0.676 5.676 6 C 0.103 3.897 7 C -0.052 4.052 8 C -0.164 4.164 9 C -0.080 4.080 10 C -0.209 4.209 11 C 0.143 3.857 12 O -0.319 6.319 13 C 0.072 3.928 14 C -0.009 4.009 15 C -0.527 4.527 16 H 0.074 0.926 17 C 0.072 3.928 18 N -0.898 5.898 19 Si 0.881 3.119 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.263 1.263 23 C -0.138 4.138 24 C -0.185 4.185 25 C -0.181 4.181 26 C -0.166 4.166 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.370 0.630 31 H 0.031 0.969 32 H 0.081 0.919 33 H 0.349 0.651 34 H 0.037 0.963 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.131 0.869 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.028 0.972 42 H 0.023 0.977 43 H 0.266 0.734 44 H 0.128 0.872 45 H 0.109 0.891 46 H 0.098 0.902 47 H 0.092 0.908 48 H 0.092 0.908 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.204 -1.940 -25.128 32.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.122 3.878 3 O -0.361 6.361 4 C -0.091 4.091 5 N -0.308 5.308 6 C -0.026 4.026 7 C -0.052 4.052 8 C -0.183 4.183 9 C -0.098 4.098 10 C -0.228 4.228 11 C 0.097 3.903 12 O -0.233 6.233 13 C -0.002 4.002 14 C -0.046 4.046 15 C -0.565 4.565 16 H 0.092 0.908 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.707 3.293 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.187 1.187 23 C -0.157 4.157 24 C -0.204 4.204 25 C -0.218 4.218 26 C -0.203 4.203 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.218 0.782 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.168 0.832 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.132 0.868 37 H 0.139 0.861 38 H 0.149 0.851 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.146 0.854 45 H 0.127 0.873 46 H 0.117 0.883 47 H 0.111 0.889 48 H 0.111 0.889 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 19.686 -2.336 -25.093 31.979 hybrid contribution 1.059 -0.378 0.016 1.125 sum 20.745 -2.714 -25.077 32.658 Atomic orbital electron populations 1.21592 0.91251 1.02480 1.03057 1.20751 0.95672 0.81022 0.90321 1.86629 1.26253 1.26422 1.96767 1.22583 0.96260 0.99746 0.90534 1.60404 1.62037 1.08086 1.00282 1.20838 0.96201 0.98440 0.87081 1.19358 0.94294 0.95944 0.95615 1.20776 1.00922 0.98300 0.98309 1.20856 0.94598 0.98725 0.95620 1.21414 0.98039 0.99774 1.03558 1.19150 0.86017 0.92329 0.92841 1.86123 1.32415 1.57865 1.46861 1.23073 0.96970 0.96173 0.83940 1.19583 0.90674 0.96944 0.97446 1.20842 1.06212 1.18037 1.11377 0.90759 1.24936 0.96999 0.96571 0.94523 1.69893 1.20241 1.41185 1.22258 0.86756 0.79040 0.82799 0.80670 1.20073 1.21172 1.18716 1.20236 0.96103 1.02840 0.96524 1.23075 1.04853 0.99765 0.92725 1.22982 0.92753 1.02119 1.03900 1.22894 0.97814 1.03283 0.96297 0.90286 0.92668 0.91383 0.78187 0.95134 0.90079 0.83162 0.94472 0.90137 0.86806 0.86138 0.85136 0.92565 0.92503 0.95381 0.95849 0.92456 0.85436 0.87310 0.88343 0.88917 0.88920 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 8.47 37.16 0.31 -0.79 16 2 C 0.16 1.18 0.98 -90.62 -0.09 1.09 16 3 O -0.55 -4.25 11.66 -35.23 -0.41 -4.67 16 4 C 0.04 0.28 4.84 -3.82 -0.02 0.26 16 5 N -0.68 -6.13 5.51 -115.06 -0.63 -6.76 16 6 C 0.10 0.97 5.81 -4.98 -0.03 0.94 16 7 C -0.05 -0.63 5.39 -104.65 -0.56 -1.19 16 8 C -0.16 -1.92 9.70 -39.56 -0.38 -2.30 16 9 C -0.08 -1.02 10.04 -39.61 -0.40 -1.42 16 10 C -0.21 -3.22 9.04 -39.44 -0.36 -3.58 16 11 C 0.14 2.44 6.69 -39.22 -0.26 2.18 16 12 O -0.32 -6.34 10.14 -19.43 -0.20 -6.54 16 13 C 0.07 1.51 4.68 37.16 0.17 1.69 16 14 C -0.01 -0.22 4.41 -27.89 -0.12 -0.34 16 15 C -0.53 -14.93 9.66 -34.44 -0.33 -15.26 16 16 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 17 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 18 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 19 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 23 C -0.14 -2.03 9.64 -39.43 -0.38 -2.41 16 24 C -0.19 -1.13 5.14 -90.62 -0.47 -1.60 16 25 C -0.18 -0.96 9.74 -26.70 -0.26 -1.22 16 26 C -0.17 -1.02 9.68 -26.70 -0.26 -1.28 16 27 H 0.08 0.83 7.47 -51.93 -0.39 0.45 16 28 H 0.05 0.48 7.29 -51.93 -0.38 0.10 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.37 1.74 7.56 45.56 0.34 2.08 16 31 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.35 3.29 8.28 -39.29 -0.33 2.96 16 34 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 35 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 36 H 0.11 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 38 H 0.13 2.01 6.30 -52.48 -0.33 1.67 16 39 H 0.06 1.13 7.67 -51.93 -0.40 0.73 16 40 H 0.06 1.15 7.65 -51.93 -0.40 0.75 16 41 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 42 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 44 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 45 H 0.11 0.61 8.11 -51.93 -0.42 0.19 16 46 H 0.10 0.48 6.37 -51.93 -0.33 0.15 16 47 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.10 0.70 7.61 -51.93 -0.40 0.30 16 LS Contribution 395.32 15.07 5.96 5.96 Total: -1.00 -31.15 395.32 -10.31 -41.45 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.60 Total: 3.37 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -3.53 Total: -23.27 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.14 Total: -33.34 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.61 Total: -11.20 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.15 -10.31 -41.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344454398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.579 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds