Wall clock time and date at job start Tue Mar 31 2020 12:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47424 * 2 1 4 4 C 1.53006 * 109.47032 * 119.99797 * 2 1 3 5 5 N 1.46900 * 109.47078 * 304.99823 * 4 2 1 6 6 C 1.46896 * 111.00195 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47382 * 179.97438 * 6 5 4 8 8 C 1.38284 * 119.97210 * 269.97968 * 7 6 5 9 9 C 1.38250 * 120.10839 * 180.02562 * 8 7 6 10 10 C 1.38161 * 120.05581 * 359.68103 * 9 8 7 11 11 C 1.38710 * 119.94432 * 0.61525 * 10 9 8 12 12 O 1.35900 * 120.05544 * 179.67631 * 11 10 9 13 13 C 1.42898 * 117.00172 * 359.72769 * 12 11 10 14 14 C 1.52997 * 109.47319 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00362 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99850 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47052 * 89.99717 * 19 17 15 21 21 H 1.48495 * 109.47307 * 209.99656 * 19 17 15 22 22 H 1.48500 * 109.47143 * 330.00164 * 19 17 15 23 23 C 1.38129 * 119.97079 * 90.00085 * 7 6 5 24 24 C 1.53000 * 109.47424 * 239.99565 * 2 1 3 25 25 C 1.52997 * 117.50253 * 128.74800 * 24 2 1 26 26 C 1.52998 * 117.49680 * 60.08733 * 24 2 1 27 27 H 1.09003 * 109.47021 * 300.00723 * 1 2 3 28 28 H 1.09001 * 109.46675 * 60.00025 * 1 2 3 29 29 H 1.08998 * 109.47444 * 180.02562 * 1 2 3 30 30 H 0.96703 * 114.00180 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47046 * 184.99492 * 4 2 1 32 32 H 1.09006 * 109.46798 * 64.99761 * 4 2 1 33 33 H 1.00901 * 111.00271 * 303.95429 * 5 4 2 34 34 H 1.09005 * 109.46944 * 59.99947 * 6 5 4 35 35 H 1.09002 * 109.47398 * 300.00389 * 6 5 4 36 36 H 1.07994 * 119.94418 * 0.02562 * 8 7 6 37 37 H 1.08002 * 119.97138 * 179.97438 * 9 8 7 38 38 H 1.08006 * 120.02996 * 180.29325 * 10 9 8 39 39 H 1.09002 * 109.47259 * 300.00149 * 13 12 11 40 40 H 1.09001 * 109.47074 * 60.00171 * 13 12 11 41 41 H 1.09002 * 109.47153 * 300.00307 * 14 13 12 42 42 H 1.08998 * 109.47533 * 59.99936 * 14 13 12 43 43 H 0.96994 * 119.99814 * 180.02562 * 18 17 15 44 44 H 1.07998 * 120.02418 * 0.02613 * 23 7 6 45 45 H 1.09000 * 115.55192 * 274.42339 * 24 2 1 46 46 H 1.09005 * 117.49264 * 0.02562 * 25 24 2 47 47 H 1.08999 * 117.50205 * 145.02391 * 25 24 2 48 48 H 1.09002 * 117.50041 * 214.98235 * 26 24 2 49 49 H 1.09005 * 117.49809 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.4542 -0.1019 2.4457 6 6 1.9220 -0.7703 3.6672 7 6 1.3020 -0.1087 4.8709 8 6 1.9437 0.9522 5.4832 9 6 1.3777 1.5610 6.5879 10 6 0.1658 1.1147 7.0788 11 6 -0.4769 0.0467 6.4702 12 8 -1.6658 -0.3983 6.9553 13 6 -2.1934 0.2767 8.0989 14 6 -3.5270 -0.3593 8.4963 15 6 -4.0838 0.3529 9.7020 16 1 -3.5410 1.1771 10.1407 17 6 -5.2866 -0.0469 10.2445 18 7 -5.7728 0.5750 11.2964 19 14 -6.2266 -1.4711 9.4844 20 1 -5.7999 -2.7424 10.1224 21 1 -7.6827 -1.2739 9.6990 22 1 -5.9443 -1.5293 8.0276 23 6 0.0934 -0.5628 5.3618 24 6 2.0400 -0.7213 -1.2492 25 6 3.0764 0.0037 -2.1100 26 6 1.6375 -0.1485 -2.6095 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 2.9704 1.4236 -0.0004 31 1 3.1262 -0.6444 1.2952 32 1 1.7515 -1.7715 1.2057 33 1 1.6533 0.8869 2.4753 34 1 3.0076 -0.6942 3.7301 35 1 1.6325 -1.8209 3.6402 36 1 2.8885 1.3058 5.0977 37 1 1.8810 2.3891 7.0646 38 1 -0.2783 1.5936 7.9390 39 1 -1.4895 0.1932 8.9270 40 1 -2.3500 1.3286 7.8598 41 1 -4.2307 -0.2754 7.6681 42 1 -3.3710 -1.4113 8.7353 43 1 -6.6188 0.2935 11.6782 44 1 -0.4070 -1.3919 4.8837 45 1 2.1253 -1.8047 -1.1646 46 1 3.3951 0.9945 -1.7862 47 1 3.8432 -0.6026 -2.5921 48 1 1.4583 -0.8549 -3.4201 49 1 1.0096 0.7425 -2.6146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344454398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:08 Heat of formation + Delta-G solvation = -68.802719 kcal Electronic energy + Delta-G solvation = -25760.227701 eV Core-core repulsion = 22073.012993 eV Total energy + Delta-G solvation = -3687.214708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.10181 -40.37076 -38.84347 -36.77533 -35.68576 -35.38875 -32.95481 -32.91884 -31.31615 -30.57324 -27.69134 -27.04803 -25.62242 -23.52251 -23.23924 -23.12279 -22.85292 -21.59858 -20.82918 -19.34638 -18.46022 -17.88281 -17.23893 -16.99345 -16.96470 -16.88875 -16.41198 -16.23722 -15.77985 -15.21015 -15.05545 -14.85403 -14.61706 -14.36780 -14.31888 -14.05699 -13.72774 -13.37990 -13.23833 -13.10482 -13.03931 -12.88733 -12.64084 -12.51142 -12.49320 -12.24286 -12.13718 -11.92915 -11.88577 -11.72993 -11.57024 -11.42183 -11.40372 -10.97951 -10.82842 -10.71937 -9.83006 -9.32121 -9.08548 -8.36245 -6.43116 0.34699 0.53398 1.34888 1.36591 1.49493 2.32142 2.33068 2.72461 2.85425 2.98566 3.19725 3.48401 3.79555 3.83299 3.91358 3.92349 4.03257 4.14617 4.20292 4.20707 4.21008 4.28639 4.32562 4.41602 4.44016 4.54264 4.64293 4.68629 4.71844 4.79910 4.84499 4.85954 4.97606 5.01736 5.08030 5.13118 5.17152 5.26576 5.28257 5.28976 5.43251 5.45515 5.47693 5.54363 5.62202 5.88275 6.06029 6.14793 6.44751 6.53448 6.62256 6.85183 7.22087 8.79404 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018812 B = 0.002040 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.020895 B =13723.587103 C =14705.725237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.168 3.832 3 O -0.569 6.569 4 C 0.043 3.957 5 N -0.688 5.688 6 C 0.108 3.892 7 C -0.045 4.045 8 C -0.152 4.152 9 C -0.080 4.080 10 C -0.225 4.225 11 C 0.106 3.894 12 O -0.337 6.337 13 C 0.088 3.912 14 C -0.006 4.006 15 C -0.538 4.538 16 H 0.042 0.958 17 C 0.014 3.986 18 N -0.941 5.941 19 Si 0.949 3.051 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.252 1.252 23 C -0.148 4.148 24 C -0.186 4.186 25 C -0.171 4.171 26 C -0.177 4.177 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.384 0.616 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.347 0.653 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.122 0.878 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.026 0.974 42 H 0.027 0.973 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.116 0.884 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.099 0.901 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.544 -2.949 -27.354 36.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.127 3.873 3 O -0.377 6.377 4 C -0.086 4.086 5 N -0.320 5.320 6 C -0.020 4.020 7 C -0.046 4.046 8 C -0.170 4.170 9 C -0.098 4.098 10 C -0.244 4.244 11 C 0.061 3.939 12 O -0.251 6.251 13 C 0.013 3.987 14 C -0.044 4.044 15 C -0.576 4.576 16 H 0.060 0.940 17 C -0.184 4.184 18 N -0.581 5.581 19 Si 0.772 3.228 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.176 1.176 23 C -0.167 4.167 24 C -0.205 4.205 25 C -0.207 4.207 26 C -0.214 4.214 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.166 0.834 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.167 0.833 37 H 0.165 0.835 38 H 0.139 0.861 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.079 0.921 44 H 0.144 0.856 45 H 0.134 0.866 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.117 0.883 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 22.061 -3.342 -27.336 35.286 hybrid contribution 0.475 0.040 0.647 0.803 sum 22.536 -3.302 -26.689 35.087 Atomic orbital electron populations 1.21566 0.92870 1.02259 1.01710 1.20634 0.94480 0.81115 0.91063 1.86601 1.27627 1.26656 1.96822 1.22572 0.97081 0.99518 0.89451 1.60357 1.62833 1.08073 1.00748 1.20818 0.97117 0.98134 0.85965 1.19699 0.93078 0.95667 0.96142 1.21202 1.01675 0.97077 0.97073 1.21200 0.93535 0.99225 0.95869 1.21494 0.99346 0.99819 1.03740 1.19472 0.85751 0.94171 0.94515 1.86029 1.34294 1.58338 1.46473 1.22646 0.95491 0.95713 0.84846 1.19442 0.92414 0.96805 0.95698 1.21106 1.06349 1.17489 1.12622 0.93999 1.25879 0.98076 0.99547 0.94938 1.70023 1.21046 1.43140 1.23873 0.85678 0.77658 0.79254 0.80248 1.18850 1.20341 1.17557 1.20405 0.97188 1.03019 0.96066 1.23026 1.05388 1.00064 0.92011 1.23057 0.92371 1.02384 1.02919 1.22910 0.98628 1.03104 0.96752 0.92409 0.93159 0.91088 0.76655 0.93451 0.89904 0.83357 0.92260 0.89987 0.83329 0.83515 0.86052 0.92450 0.92644 0.95518 0.95476 0.92065 0.85605 0.86574 0.87867 0.87804 0.88254 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.47 71.98 0.61 -1.53 16 2 C 0.17 2.13 0.98 -10.79 -0.01 2.12 16 3 O -0.57 -7.68 11.66 -148.98 -1.74 -9.41 16 4 C 0.04 0.50 4.84 86.31 0.42 0.92 16 5 N -0.69 -10.86 5.51 -517.93 -2.85 -13.72 16 6 C 0.11 1.71 5.81 85.56 0.50 2.20 16 7 C -0.05 -1.00 5.39 -19.88 -0.11 -1.11 16 8 C -0.15 -3.06 9.70 22.28 0.22 -2.84 16 9 C -0.08 -1.89 10.04 22.25 0.22 -1.67 16 10 C -0.22 -6.93 9.04 22.36 0.20 -6.73 16 11 C 0.11 3.65 6.69 22.50 0.15 3.80 16 12 O -0.34 -13.67 10.14 -92.43 -0.94 -14.61 16 13 C 0.09 3.76 4.68 71.98 0.34 4.10 16 14 C -0.01 -0.30 4.41 29.85 0.13 -0.17 16 15 C -0.54 -31.38 9.66 25.60 0.25 -31.13 16 16 H 0.04 2.63 7.99 -2.91 -0.02 2.61 16 17 C 0.01 0.81 5.47 84.65 0.46 1.28 16 18 N -0.94 -58.66 13.96 21.45 0.30 -58.36 16 19 Si 0.95 44.79 27.47 68.60 1.88 46.67 16 20 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 23 C -0.15 -4.27 9.64 22.37 0.22 -4.06 16 24 C -0.19 -1.88 5.14 -10.80 -0.06 -1.94 16 25 C -0.17 -1.40 9.74 30.62 0.30 -1.10 16 26 C -0.18 -1.94 9.68 30.62 0.30 -1.64 16 27 H 0.06 1.22 7.47 -2.39 -0.02 1.20 16 28 H 0.05 0.87 7.29 -2.39 -0.02 0.85 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.38 2.63 7.56 -74.06 -0.56 2.07 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.35 5.68 8.28 -89.69 -0.74 4.94 16 34 H 0.06 0.71 8.08 -2.38 -0.02 0.69 16 35 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 36 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 37 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 38 H 0.12 3.85 6.30 -2.91 -0.02 3.84 16 39 H 0.06 2.39 7.67 -2.39 -0.02 2.38 16 40 H 0.06 2.34 7.65 -2.39 -0.02 2.32 16 41 H 0.03 1.32 7.20 -2.39 -0.02 1.30 16 42 H 0.03 1.31 7.57 -2.39 -0.02 1.29 16 43 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 44 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 45 H 0.12 1.02 8.11 -2.39 -0.02 1.00 16 46 H 0.10 0.74 6.37 -2.38 -0.02 0.73 16 47 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.09 1.17 7.61 -2.38 -0.02 1.15 16 Total: -1.00 -68.61 395.32 0.37 -68.24 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -0.42 Total: 20.71 kcal Atomic # 6 Polarization: -43.64 SS G_CDS: 4.13 Total: -39.51 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: -2.55 Total: -72.08 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -2.67 Total: -24.02 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Total: -68.61 0.37 -68.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344454398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.567 kcal (2) G-P(sol) polarization free energy of solvation -68.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds