Wall clock time and date at job start Tue Mar 31 2020 13:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47097 * 2 1 4 4 O 1.42893 * 109.47129 * 184.74789 * 3 2 1 5 5 C 1.35993 * 117.00358 * 184.84540 * 4 3 2 6 6 C 1.38564 * 120.07604 * 267.63924 * 5 4 3 7 7 C 1.50700 * 119.99917 * 359.97438 * 6 5 4 8 8 N 1.46501 * 109.46959 * 282.20132 * 7 6 5 9 9 C 1.36935 * 120.00396 * 85.15143 * 8 7 6 10 10 H 1.08002 * 119.99445 * 335.28629 * 9 8 7 11 11 C 1.38806 * 120.00564 * 155.28144 * 9 8 7 12 12 N 1.31618 * 119.99918 * 155.65602 * 11 9 8 13 13 Si 1.86796 * 119.99890 * 335.66246 * 11 9 8 14 14 H 1.48504 * 109.47625 * 90.27493 * 13 11 9 15 15 H 1.48506 * 109.47302 * 210.27405 * 13 11 9 16 16 H 1.48495 * 109.47172 * 330.27251 * 13 11 9 17 17 C 1.46500 * 120.00018 * 265.15319 * 8 7 6 18 18 C 1.52999 * 117.50068 * 10.58688 * 17 8 7 19 19 C 1.53005 * 60.00171 * 252.50910 * 18 17 8 20 20 C 1.38246 * 120.00166 * 180.26979 * 6 5 4 21 21 C 1.38254 * 120.14232 * 359.72394 * 20 6 5 22 22 C 1.38236 * 120.14967 * 0.02562 * 21 20 6 23 23 C 1.38566 * 120.00021 * 359.97438 * 22 21 20 24 24 O 1.35992 * 120.07462 * 180.02562 * 23 22 21 25 25 C 1.42897 * 116.99898 * 0.02562 * 24 23 22 26 26 C 1.52999 * 109.46970 * 179.97438 * 25 24 23 27 27 H 1.09000 * 109.47092 * 184.84875 * 1 2 3 28 28 H 1.09001 * 109.47437 * 304.85460 * 1 2 3 29 29 H 1.09002 * 109.46885 * 64.85028 * 1 2 3 30 30 H 1.09004 * 109.47031 * 240.00392 * 2 1 3 31 31 H 1.08993 * 109.46901 * 119.99914 * 2 1 3 32 32 H 1.09002 * 109.47071 * 64.74997 * 3 2 1 33 33 H 1.08997 * 109.47047 * 304.75404 * 3 2 1 34 34 H 1.08999 * 109.47504 * 42.19957 * 7 6 5 35 35 H 1.09001 * 109.47316 * 162.20401 * 7 6 5 36 36 H 0.97010 * 119.99974 * 180.02562 * 12 11 9 37 37 H 1.09002 * 115.55343 * 156.29116 * 17 8 7 38 38 H 1.09002 * 117.49789 * 359.97438 * 18 17 8 39 39 H 1.08997 * 117.50191 * 145.02505 * 18 17 8 40 40 H 1.08999 * 117.50085 * 252.51115 * 19 18 17 41 41 H 1.08998 * 117.49783 * 107.48319 * 19 18 17 42 42 H 1.07997 * 119.92726 * 179.69957 * 20 6 5 43 43 H 1.08000 * 119.92070 * 179.97438 * 21 20 6 44 44 H 1.07997 * 120.00346 * 180.02562 * 22 21 20 45 45 H 1.09001 * 109.47342 * 60.00226 * 25 24 23 46 46 H 1.09003 * 109.47333 * 299.99691 * 25 24 23 47 47 H 1.09004 * 109.47346 * 60.00200 * 26 25 24 48 48 H 1.09002 * 109.46947 * 180.02562 * 26 25 24 49 49 H 1.09001 * 109.47499 * 299.99799 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4646 1.4441 -0.1115 5 6 4.0895 2.6488 -0.0244 6 6 4.3592 3.3758 -1.1727 7 6 3.9605 2.8314 -2.5202 8 7 4.9192 1.8042 -2.9349 9 6 4.7610 0.5104 -2.5150 10 1 4.2177 0.3006 -1.6054 11 6 5.2987 -0.5313 -3.2583 12 7 5.5821 -1.6772 -2.6761 13 14 5.6201 -0.3067 -5.0846 14 1 6.9980 0.2098 -5.2850 15 1 5.4755 -1.6125 -5.7770 16 1 4.6425 0.6610 -5.6440 17 6 6.0472 2.1610 -3.7989 18 6 6.3151 3.6492 -4.0324 19 6 5.7262 2.7925 -5.1551 20 6 4.9995 4.5978 -1.0828 21 6 5.3669 5.0998 0.1518 22 6 5.0962 4.3820 1.3018 23 6 4.4547 3.1566 1.2187 24 8 4.1871 2.4495 2.3490 25 6 4.5951 3.0301 3.5893 26 6 4.2118 2.0971 4.7397 27 1 -0.3633 -1.0240 0.0869 28 1 -0.3634 0.5873 0.8433 29 1 -0.3633 0.4368 -0.9303 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.7478 1.9312 0.9295 33 1 1.6088 1.9803 -0.8443 34 1 2.9644 2.3936 -2.4551 35 1 3.9550 3.6397 -3.2515 36 1 5.9582 -2.4051 -3.1955 37 1 6.9096 1.4966 -3.7447 38 1 5.6518 4.3627 -3.5435 39 1 7.3539 3.9640 -4.1318 40 1 6.3776 2.5438 -5.9929 41 1 4.6758 2.9425 -5.4044 42 1 5.2134 5.1611 -1.9790 43 1 5.8673 6.0546 0.2178 44 1 5.3839 4.7767 2.2650 45 1 4.0988 3.9916 3.7211 46 1 5.6752 3.1764 3.5842 47 1 4.7077 1.1354 4.6083 48 1 4.5225 2.5403 5.6859 49 1 3.1316 1.9512 4.7448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352744196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:57 Heat of formation + Delta-G solvation = 3.150477 kcal Electronic energy + Delta-G solvation = -28680.955844 eV Core-core repulsion = 24996.861260 eV Total energy + Delta-G solvation = -3684.094584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.20448 -38.26629 -37.36376 -36.53031 -33.46322 -33.21477 -31.98854 -31.49411 -29.80277 -28.79119 -26.32030 -25.54444 -23.71228 -22.84246 -22.13080 -21.60944 -21.11937 -20.93464 -19.62366 -17.81273 -17.21609 -16.70684 -16.06833 -15.99694 -15.31002 -15.04386 -14.90004 -14.49311 -14.37491 -13.89793 -13.60923 -13.33228 -13.12622 -12.87369 -12.71811 -12.50777 -12.32121 -12.07132 -11.88784 -11.67986 -11.66148 -11.49793 -11.28609 -11.23054 -11.02642 -10.80769 -10.63561 -10.56553 -10.46900 -10.40003 -10.22296 -9.66291 -9.50756 -9.34226 -8.96125 -8.45035 -8.16641 -7.71127 -6.85364 -5.79806 -3.14222 1.61238 1.76287 3.37265 3.48084 3.61918 3.69909 3.87884 4.32289 4.63402 4.78564 4.90363 4.93288 4.94118 5.13602 5.20820 5.22663 5.34317 5.36878 5.42985 5.49773 5.57051 5.64130 5.68878 5.73166 5.76238 5.76706 5.79704 5.82083 5.86011 5.89503 6.00689 6.04524 6.16021 6.21756 6.22864 6.27334 6.43532 6.50516 6.53415 6.64071 6.70287 6.73174 6.80959 6.91238 6.97948 7.07954 7.57105 8.08742 8.28695 8.55469 9.17299 9.88347 10.14437 11.33796 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011335 B = 0.005437 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.667227 B = 5148.847311 C = 6386.377303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.072 3.928 4 O -0.293 6.293 5 C 0.095 3.905 6 C -0.067 4.067 7 C 0.185 3.815 8 N -0.554 5.554 9 C -0.263 4.263 10 H 0.120 0.880 11 C 0.027 3.973 12 N -0.900 5.900 13 Si 0.871 3.129 14 H -0.293 1.293 15 H -0.311 1.311 16 H -0.264 1.264 17 C 0.126 3.874 18 C -0.215 4.215 19 C -0.232 4.232 20 C -0.141 4.141 21 C -0.095 4.095 22 C -0.211 4.211 23 C 0.103 3.897 24 O -0.305 6.305 25 C 0.054 3.946 26 C -0.151 4.151 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.259 0.741 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.122 0.878 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.354 12.545 9.352 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.003 4.003 4 O -0.209 6.209 5 C 0.049 3.951 6 C -0.070 4.070 7 C 0.059 3.941 8 N -0.269 5.269 9 C -0.391 4.391 10 H 0.137 0.863 11 C -0.172 4.172 12 N -0.543 5.543 13 Si 0.701 3.299 14 H -0.220 1.220 15 H -0.240 1.240 16 H -0.189 1.189 17 C 0.017 3.983 18 C -0.254 4.254 19 C -0.273 4.273 20 C -0.159 4.159 21 C -0.113 4.113 22 C -0.230 4.230 23 C 0.057 3.943 24 O -0.218 6.218 25 C -0.021 4.021 26 C -0.208 4.208 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.130 0.870 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.140 0.860 43 H 0.136 0.864 44 H 0.140 0.860 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.092 0.908 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.368 11.926 9.370 16.089 hybrid contribution 0.563 0.525 -1.003 1.265 sum -4.804 12.452 8.367 15.753 Atomic orbital electron populations 1.21667 0.95443 1.01702 1.01398 1.21441 0.94709 0.95663 1.04293 1.22630 0.80869 0.97842 0.98975 1.86373 1.18437 1.23809 1.92300 1.17778 1.00749 0.87940 0.88610 1.21091 0.96647 0.92334 0.96924 1.19714 0.93522 0.91761 0.89152 1.43774 1.23167 1.05655 1.54293 1.19502 1.33959 0.79215 1.06383 0.86292 1.25223 0.99005 0.95318 0.97610 1.69936 1.44359 1.04876 1.35088 0.87078 0.78312 0.75492 0.89023 1.22020 1.23960 1.18874 1.21291 0.92886 0.92622 0.91524 1.23457 1.00816 0.96510 1.04615 1.23568 1.00903 1.08436 0.94397 1.20872 1.01470 0.96282 0.97325 1.20798 0.99223 0.99247 0.92056 1.20964 1.06682 0.95900 0.99457 1.19494 0.97557 0.91080 0.86179 1.86184 1.77201 1.45888 1.12576 1.22710 0.99435 0.96943 0.83046 1.21750 1.02833 1.00391 0.95801 0.92309 0.93211 0.92717 0.89723 0.91422 0.94217 0.93721 0.91754 0.92692 0.93113 0.86972 0.89011 0.89825 0.90187 0.89415 0.86030 0.86351 0.86016 0.92625 0.92341 0.91319 0.90777 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.91 37.16 0.37 -1.46 16 2 C -0.12 -2.02 6.30 -26.73 -0.17 -2.19 16 3 C 0.07 1.24 5.87 37.16 0.22 1.45 16 4 O -0.29 -6.24 6.29 -34.22 -0.22 -6.46 16 5 C 0.09 1.88 5.63 -39.12 -0.22 1.66 16 6 C -0.07 -1.25 5.45 -104.50 -0.57 -1.82 16 7 C 0.18 3.69 4.95 -5.19 -0.03 3.66 16 8 N -0.55 -13.14 2.64 -167.02 -0.44 -13.58 16 9 C -0.26 -7.32 9.73 -15.06 -0.15 -7.47 16 10 H 0.12 3.51 5.24 -52.49 -0.27 3.23 16 11 C 0.03 0.79 5.23 -17.43 -0.09 0.70 16 12 N -0.90 -27.98 13.97 55.49 0.78 -27.21 16 13 Si 0.87 22.64 23.55 -169.99 -4.00 18.63 16 14 H -0.29 -7.45 6.59 56.52 0.37 -7.08 16 15 H -0.31 -8.36 7.11 56.52 0.40 -7.96 16 16 H -0.26 -6.64 6.09 56.52 0.34 -6.29 16 17 C 0.13 2.82 3.99 -67.93 -0.27 2.55 16 18 C -0.22 -3.85 9.72 -26.73 -0.26 -4.11 16 19 C -0.23 -4.57 7.29 -26.73 -0.19 -4.76 16 20 C -0.14 -2.25 9.28 -39.57 -0.37 -2.61 16 21 C -0.09 -1.36 10.04 -39.58 -0.40 -1.76 16 22 C -0.21 -3.15 9.04 -39.46 -0.36 -3.50 16 23 C 0.10 1.82 6.70 -39.12 -0.26 1.56 16 24 O -0.30 -5.15 9.92 -34.22 -0.34 -5.49 16 25 C 0.05 0.65 5.46 37.16 0.20 0.85 16 26 C -0.15 -1.49 10.28 37.16 0.38 -1.11 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.04 0.73 7.26 -51.93 -0.38 0.36 16 34 H 0.06 1.30 6.79 -51.93 -0.35 0.95 16 35 H 0.05 0.98 5.93 -51.93 -0.31 0.67 16 36 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 37 H 0.11 2.77 6.15 -51.93 -0.32 2.45 16 38 H 0.09 1.50 4.01 -51.93 -0.21 1.30 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.08 1.52 7.96 -51.93 -0.41 1.11 16 41 H 0.09 1.72 8.04 -51.93 -0.42 1.30 16 42 H 0.12 1.72 6.11 -52.49 -0.32 1.40 16 43 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 44 H 0.12 1.47 6.30 -52.49 -0.33 1.14 16 45 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 46 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -32.48 377.94 -8.68 -41.16 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -7.99 Total: 5.60 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -2.16 Total: -18.36 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.33 Total: -40.79 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.55 Total: -11.94 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.00 Total: 18.63 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.48 -8.68 -41.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352744196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.310 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds