Wall clock time and date at job start Tue Mar 31 2020 13:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47097 * 2 1 4 4 O 1.42893 * 109.47129 * 184.74789 * 3 2 1 5 5 C 1.35993 * 117.00358 * 184.84540 * 4 3 2 6 6 C 1.38564 * 120.07604 * 267.63924 * 5 4 3 7 7 C 1.50700 * 119.99917 * 359.97438 * 6 5 4 8 8 N 1.46501 * 109.46959 * 282.20132 * 7 6 5 9 9 C 1.36935 * 120.00396 * 85.15143 * 8 7 6 10 10 H 1.08002 * 119.99445 * 335.28629 * 9 8 7 11 11 C 1.38806 * 120.00564 * 155.28144 * 9 8 7 12 12 N 1.31618 * 119.99918 * 155.65602 * 11 9 8 13 13 Si 1.86796 * 119.99890 * 335.66246 * 11 9 8 14 14 H 1.48504 * 109.47625 * 90.27493 * 13 11 9 15 15 H 1.48506 * 109.47302 * 210.27405 * 13 11 9 16 16 H 1.48495 * 109.47172 * 330.27251 * 13 11 9 17 17 C 1.46500 * 120.00018 * 265.15319 * 8 7 6 18 18 C 1.52999 * 117.50068 * 10.58688 * 17 8 7 19 19 C 1.53005 * 60.00171 * 252.50910 * 18 17 8 20 20 C 1.38246 * 120.00166 * 180.26979 * 6 5 4 21 21 C 1.38254 * 120.14232 * 359.72394 * 20 6 5 22 22 C 1.38236 * 120.14967 * 0.02562 * 21 20 6 23 23 C 1.38566 * 120.00021 * 359.97438 * 22 21 20 24 24 O 1.35992 * 120.07462 * 180.02562 * 23 22 21 25 25 C 1.42897 * 116.99898 * 0.02562 * 24 23 22 26 26 C 1.52999 * 109.46970 * 179.97438 * 25 24 23 27 27 H 1.09000 * 109.47092 * 184.84875 * 1 2 3 28 28 H 1.09001 * 109.47437 * 304.85460 * 1 2 3 29 29 H 1.09002 * 109.46885 * 64.85028 * 1 2 3 30 30 H 1.09004 * 109.47031 * 240.00392 * 2 1 3 31 31 H 1.08993 * 109.46901 * 119.99914 * 2 1 3 32 32 H 1.09002 * 109.47071 * 64.74997 * 3 2 1 33 33 H 1.08997 * 109.47047 * 304.75404 * 3 2 1 34 34 H 1.08999 * 109.47504 * 42.19957 * 7 6 5 35 35 H 1.09001 * 109.47316 * 162.20401 * 7 6 5 36 36 H 0.97010 * 119.99974 * 180.02562 * 12 11 9 37 37 H 1.09002 * 115.55343 * 156.29116 * 17 8 7 38 38 H 1.09002 * 117.49789 * 359.97438 * 18 17 8 39 39 H 1.08997 * 117.50191 * 145.02505 * 18 17 8 40 40 H 1.08999 * 117.50085 * 252.51115 * 19 18 17 41 41 H 1.08998 * 117.49783 * 107.48319 * 19 18 17 42 42 H 1.07997 * 119.92726 * 179.69957 * 20 6 5 43 43 H 1.08000 * 119.92070 * 179.97438 * 21 20 6 44 44 H 1.07997 * 120.00346 * 180.02562 * 22 21 20 45 45 H 1.09001 * 109.47342 * 60.00226 * 25 24 23 46 46 H 1.09003 * 109.47333 * 299.99691 * 25 24 23 47 47 H 1.09004 * 109.47346 * 60.00200 * 26 25 24 48 48 H 1.09002 * 109.46947 * 180.02562 * 26 25 24 49 49 H 1.09001 * 109.47499 * 299.99799 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4646 1.4441 -0.1115 5 6 4.0895 2.6488 -0.0244 6 6 4.3592 3.3758 -1.1727 7 6 3.9605 2.8314 -2.5202 8 7 4.9192 1.8042 -2.9349 9 6 4.7610 0.5104 -2.5150 10 1 4.2177 0.3006 -1.6054 11 6 5.2987 -0.5313 -3.2583 12 7 5.5821 -1.6772 -2.6761 13 14 5.6201 -0.3067 -5.0846 14 1 6.9980 0.2098 -5.2850 15 1 5.4755 -1.6125 -5.7770 16 1 4.6425 0.6610 -5.6440 17 6 6.0472 2.1610 -3.7989 18 6 6.3151 3.6492 -4.0324 19 6 5.7262 2.7925 -5.1551 20 6 4.9995 4.5978 -1.0828 21 6 5.3669 5.0998 0.1518 22 6 5.0962 4.3820 1.3018 23 6 4.4547 3.1566 1.2187 24 8 4.1871 2.4495 2.3490 25 6 4.5951 3.0301 3.5893 26 6 4.2118 2.0971 4.7397 27 1 -0.3633 -1.0240 0.0869 28 1 -0.3634 0.5873 0.8433 29 1 -0.3633 0.4368 -0.9303 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.7478 1.9312 0.9295 33 1 1.6088 1.9803 -0.8443 34 1 2.9644 2.3936 -2.4551 35 1 3.9550 3.6397 -3.2515 36 1 5.9582 -2.4051 -3.1955 37 1 6.9096 1.4966 -3.7447 38 1 5.6518 4.3627 -3.5435 39 1 7.3539 3.9640 -4.1318 40 1 6.3776 2.5438 -5.9929 41 1 4.6758 2.9425 -5.4044 42 1 5.2134 5.1611 -1.9790 43 1 5.8673 6.0546 0.2178 44 1 5.3839 4.7767 2.2650 45 1 4.0988 3.9916 3.7211 46 1 5.6752 3.1764 3.5842 47 1 4.7077 1.1354 4.6083 48 1 4.5225 2.5403 5.6859 49 1 3.1316 1.9512 4.7448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352744196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:56 Heat of formation + Delta-G solvation = -15.687283 kcal Electronic energy + Delta-G solvation = -28681.772711 eV Core-core repulsion = 24996.861260 eV Total energy + Delta-G solvation = -3684.911450 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.48269 -39.64957 -38.89072 -37.83928 -35.08739 -34.66612 -33.65388 -32.62496 -31.41061 -30.00297 -27.82373 -26.89662 -25.16924 -24.32189 -23.49539 -22.99055 -22.46991 -22.30442 -21.24422 -19.26060 -18.75663 -18.06242 -17.49695 -17.21854 -17.04246 -16.55710 -16.20918 -15.93514 -15.73808 -15.51913 -14.99252 -14.85670 -14.48526 -14.19285 -13.88153 -13.83779 -13.49915 -13.46447 -13.35408 -13.10998 -13.00323 -12.86777 -12.70141 -12.63751 -12.48188 -12.22492 -12.11731 -12.05748 -11.80638 -11.68111 -11.61800 -11.52736 -11.28419 -11.03427 -10.55559 -10.43913 -9.54030 -8.95845 -8.74838 -8.01707 -5.30733 0.34754 0.51043 1.38252 1.47644 1.59753 2.29011 2.53861 2.62620 2.99845 3.06037 3.24194 3.44365 3.90183 3.97840 4.03973 4.05536 4.06447 4.14824 4.16701 4.24368 4.26412 4.32145 4.34317 4.37280 4.42991 4.48756 4.53496 4.61673 4.72947 4.79531 4.83627 4.86270 4.92751 4.95504 4.98073 5.02961 5.13794 5.18580 5.21893 5.24510 5.29980 5.37775 5.39486 5.54605 5.67393 5.88155 6.04707 6.40158 6.47336 6.93328 7.07662 7.78624 8.08281 9.16311 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011335 B = 0.005437 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.667227 B = 5148.847311 C = 6386.377303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.120 4.120 3 C 0.074 3.926 4 O -0.329 6.329 5 C 0.056 3.944 6 C -0.088 4.088 7 C 0.188 3.812 8 N -0.567 5.567 9 C -0.236 4.236 10 H 0.092 0.908 11 C -0.038 4.038 12 N -0.957 5.957 13 Si 0.935 3.065 14 H -0.285 1.285 15 H -0.328 1.328 16 H -0.249 1.249 17 C 0.080 3.920 18 C -0.172 4.172 19 C -0.224 4.224 20 C -0.141 4.141 21 C -0.085 4.085 22 C -0.204 4.204 23 C 0.086 3.914 24 O -0.334 6.334 25 C 0.044 3.956 26 C -0.148 4.148 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.253 0.747 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.146 0.854 43 H 0.161 0.839 44 H 0.154 0.846 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.051 0.949 48 H 0.106 0.894 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.092 17.069 9.550 20.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.158 4.158 3 C 0.000 4.000 4 O -0.247 6.247 5 C 0.011 3.989 6 C -0.091 4.091 7 C 0.063 3.937 8 N -0.284 5.284 9 C -0.365 4.365 10 H 0.109 0.891 11 C -0.232 4.232 12 N -0.604 5.604 13 Si 0.765 3.235 14 H -0.212 1.212 15 H -0.259 1.259 16 H -0.173 1.173 17 C -0.028 4.028 18 C -0.210 4.210 19 C -0.265 4.265 20 C -0.159 4.159 21 C -0.102 4.102 22 C -0.223 4.223 23 C 0.040 3.960 24 O -0.248 6.248 25 C -0.030 4.030 26 C -0.205 4.205 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.164 0.836 43 H 0.179 0.821 44 H 0.171 0.829 45 H 0.096 0.904 46 H 0.083 0.917 47 H 0.070 0.930 48 H 0.125 0.875 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.112 16.533 9.557 19.769 hybrid contribution 0.476 -0.746 -0.876 1.245 sum -4.636 15.787 8.681 18.603 Atomic orbital electron populations 1.21613 0.92098 1.02932 1.02570 1.21421 0.97550 0.94968 1.01814 1.22694 0.79748 0.98084 0.99474 1.86306 1.20064 1.25610 1.92678 1.18234 1.02280 0.88052 0.90328 1.21002 0.98511 0.93910 0.95645 1.19773 0.91950 0.91289 0.90675 1.43756 1.24823 1.04799 1.55003 1.19480 1.30800 0.81437 1.04811 0.89112 1.25794 1.00726 0.95302 1.01333 1.70077 1.47931 1.06114 1.36275 0.86041 0.78734 0.74555 0.84131 1.21204 1.25890 1.17271 1.21246 0.92083 0.95751 0.93708 1.23523 1.02610 0.93396 1.01514 1.23580 1.01567 1.07700 0.93663 1.21147 1.00503 0.95087 0.99193 1.21274 0.97726 1.00354 0.90890 1.21375 1.04963 0.94503 1.01416 1.19663 0.98210 0.92210 0.85905 1.86156 1.77656 1.47198 1.13813 1.23063 1.00139 0.98246 0.81555 1.21793 1.02561 0.99561 0.96560 0.91223 0.91196 0.92143 0.93631 0.92399 0.93114 0.93465 0.93410 0.89949 0.93782 0.90106 0.86949 0.87364 0.89300 0.89100 0.83638 0.82114 0.82874 0.90395 0.91657 0.92989 0.87529 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 9.91 71.98 0.71 -2.73 16 2 C -0.12 -4.23 6.30 30.60 0.19 -4.04 16 3 C 0.07 2.72 5.87 71.98 0.42 3.14 16 4 O -0.33 -14.93 6.29 -79.60 -0.50 -15.43 16 5 C 0.06 2.26 5.63 22.57 0.13 2.39 16 6 C -0.09 -3.21 5.45 -19.78 -0.11 -3.32 16 7 C 0.19 7.40 4.95 85.63 0.42 7.82 16 8 N -0.57 -27.08 2.64 -682.33 -1.80 -28.88 16 9 C -0.24 -13.76 9.73 84.03 0.82 -12.95 16 10 H 0.09 5.77 5.24 -2.91 -0.02 5.76 16 11 C -0.04 -2.34 5.23 84.86 0.44 -1.90 16 12 N -0.96 -63.37 13.97 21.65 0.30 -63.06 16 13 Si 0.93 48.76 23.55 68.60 1.62 50.38 16 14 H -0.28 -14.27 6.59 99.48 0.66 -13.62 16 15 H -0.33 -17.87 7.11 99.48 0.71 -17.16 16 16 H -0.25 -12.09 6.09 99.48 0.61 -11.49 16 17 C 0.08 3.49 3.99 44.99 0.18 3.67 16 18 C -0.17 -5.43 9.72 30.60 0.30 -5.13 16 19 C -0.22 -8.09 7.29 30.60 0.22 -7.87 16 20 C -0.14 -3.99 9.28 22.28 0.21 -3.78 16 21 C -0.08 -2.04 10.04 22.27 0.22 -1.81 16 22 C -0.20 -5.43 9.04 22.35 0.20 -5.23 16 23 C 0.09 2.99 6.70 22.57 0.15 3.15 16 24 O -0.33 -11.30 9.92 -79.60 -0.79 -12.09 16 25 C 0.04 0.99 5.46 71.98 0.39 1.38 16 26 C -0.15 -2.74 10.28 71.98 0.74 -2.00 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.64 7.26 -2.39 -0.02 1.63 16 34 H 0.05 1.99 6.79 -2.39 -0.02 1.97 16 35 H 0.08 2.71 5.93 -2.39 -0.01 2.69 16 36 H 0.25 16.12 8.31 -92.70 -0.77 15.35 16 37 H 0.08 4.00 6.15 -2.39 -0.01 3.99 16 38 H 0.11 3.08 4.01 -2.39 -0.01 3.07 16 39 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.09 3.06 7.96 -2.39 -0.02 3.04 16 41 H 0.09 3.24 8.04 -2.39 -0.02 3.22 16 42 H 0.15 3.33 6.11 -2.91 -0.02 3.31 16 43 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 44 H 0.15 3.02 6.30 -2.91 -0.02 3.00 16 45 H 0.08 1.37 7.66 -2.39 -0.02 1.35 16 46 H 0.07 1.34 7.66 -2.39 -0.02 1.32 16 47 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 48 H 0.11 1.26 8.14 -2.39 -0.02 1.25 16 49 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -77.00 377.94 5.26 -71.73 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.78 Total: 26.57 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: 5.65 Total: -29.22 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -1.50 Total: -91.94 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -1.29 Total: -27.52 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 1.62 Total: 50.38 kcal Total: -77.00 5.26 -71.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352744196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.046 kcal (2) G-P(sol) polarization free energy of solvation -76.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds