Wall clock time and date at job start Tue Mar 31 2020 12:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46709 * 54.27093 * 3 2 1 5 5 C 1.50704 * 109.47191 * 174.26693 * 3 2 1 6 6 H 1.07993 * 119.99899 * 114.30589 * 5 3 2 7 7 C 1.37877 * 119.99804 * 294.31031 * 5 3 2 8 8 N 1.31515 * 120.00092 * 153.95290 * 7 5 3 9 9 Si 1.86797 * 120.00203 * 333.94809 * 7 5 3 10 10 H 1.48495 * 109.47462 * 180.02562 * 9 7 5 11 11 H 1.48508 * 109.47244 * 300.00399 * 9 7 5 12 12 H 1.48497 * 109.47273 * 60.00127 * 9 7 5 13 13 N 1.46493 * 109.47194 * 294.26752 * 3 2 1 14 14 C 1.34780 * 119.99775 * 85.00316 * 13 3 2 15 15 O 1.21273 * 120.00319 * 359.97438 * 14 13 3 16 16 C 1.50707 * 119.99771 * 179.97438 * 14 13 3 17 17 C 1.53003 * 109.47207 * 299.99799 * 16 14 13 18 18 C 1.53003 * 109.46815 * 59.99925 * 16 14 13 19 19 C 1.53001 * 109.47157 * 179.97438 * 16 14 13 20 20 C 1.50698 * 109.47278 * 180.02562 * 19 16 14 21 21 C 1.38163 * 120.02675 * 265.00099 * 20 19 16 22 22 C 1.38251 * 120.05596 * 179.97438 * 21 20 19 23 23 C 1.38287 * 120.10734 * 0.02589 * 22 21 20 24 24 C 1.38126 * 120.06100 * 0.02562 * 23 22 21 25 25 C 1.38712 * 120.02614 * 84.72446 * 20 19 16 26 26 O 1.35898 * 120.05767 * 0.02562 * 25 20 19 27 27 C 1.42894 * 117.00016 * 180.02562 * 26 25 20 28 28 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 30 30 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 31 31 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 32 32 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 33 33 H 0.96998 * 119.99755 * 354.95732 * 8 7 5 34 34 H 0.96995 * 120.00345 * 264.99781 * 13 3 2 35 35 H 1.09001 * 109.46810 * 60.00135 * 17 16 14 36 36 H 1.08998 * 109.46910 * 179.97438 * 17 16 14 37 37 H 1.08993 * 109.47137 * 300.00137 * 17 16 14 38 38 H 1.08998 * 109.47221 * 60.00470 * 18 16 14 39 39 H 1.09007 * 109.46955 * 179.97438 * 18 16 14 40 40 H 1.08996 * 109.47134 * 299.99346 * 18 16 14 41 41 H 1.08999 * 109.47208 * 300.00622 * 19 16 14 42 42 H 1.09003 * 109.46920 * 60.00210 * 19 16 14 43 43 H 1.07998 * 119.97295 * 359.97438 * 21 20 19 44 44 H 1.07995 * 119.94520 * 180.02562 * 22 21 20 45 45 H 1.08002 * 119.97011 * 180.02562 * 23 22 21 46 46 H 1.07997 * 120.03255 * 179.97438 * 24 23 22 47 47 H 1.08996 * 109.47110 * 299.99642 * 27 26 25 48 48 H 1.08993 * 109.47569 * 59.99865 * 27 26 25 49 49 H 1.09006 * 109.47319 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5952 1.9851 0.8343 5 6 3.5403 1.4451 0.1419 6 1 4.1587 1.8024 -0.6681 7 6 4.1233 0.9912 1.3060 8 7 5.3466 0.5087 1.2840 9 14 3.1759 1.0615 2.9143 10 1 4.0186 0.5180 4.0095 11 1 2.8192 2.4708 3.2176 12 1 1.9366 0.2521 2.7946 13 7 1.6675 2.0922 -1.2591 14 6 0.4516 2.6585 -1.3913 15 8 -0.3343 2.6300 -0.4680 16 6 0.0686 3.3273 -2.6864 17 6 1.0426 4.4708 -2.9774 18 6 0.1264 2.3060 -3.8242 19 6 -1.3522 3.8834 -2.5726 20 6 -1.7354 4.5516 -3.8678 21 6 -1.5679 5.9147 -4.0185 22 6 -1.9188 6.5283 -5.2067 23 6 -2.4385 5.7798 -6.2469 24 6 -2.6089 4.4169 -6.1009 25 6 -2.2511 3.7977 -4.9117 26 8 -2.4120 2.4560 -4.7677 27 6 -2.9480 1.7434 -5.8843 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.8116 0.4042 0.4392 34 1 2.2958 2.1148 -1.9976 35 1 2.0547 4.0742 -3.0586 36 1 0.7659 4.9542 -3.9143 37 1 1.0014 5.1983 -2.1668 38 1 -0.5675 1.4914 -3.6169 39 1 -0.1510 2.7896 -4.7609 40 1 1.1385 1.9096 -3.9055 41 1 -2.0458 3.0685 -2.3654 42 1 -1.3937 4.6108 -1.7619 43 1 -1.1626 6.5015 -3.2075 44 1 -1.7867 7.5938 -5.3227 45 1 -2.7115 6.2613 -7.1743 46 1 -3.0152 3.8328 -6.9133 47 1 -3.9376 2.1330 -6.1229 48 1 -2.2910 1.8688 -6.7448 49 1 -3.0249 0.6846 -5.6367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358052610.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:38 Heat of formation + Delta-G solvation = -68.912828 kcal Electronic energy + Delta-G solvation = -28307.497015 eV Core-core repulsion = 24620.277531 eV Total energy + Delta-G solvation = -3687.219483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.74832 -39.40577 -37.58428 -35.93822 -34.87193 -32.47746 -31.77057 -30.75401 -30.25417 -27.71537 -27.12403 -27.09027 -26.42267 -23.20979 -22.27796 -22.19708 -21.31645 -19.65706 -18.98269 -18.01453 -17.44316 -16.42300 -16.28044 -16.03694 -15.52993 -15.42037 -14.80553 -14.59176 -14.11875 -13.94307 -13.63157 -13.39533 -13.27192 -12.93614 -12.75752 -12.47766 -12.36242 -12.27285 -12.14250 -11.94248 -11.81553 -11.78316 -11.54501 -11.31307 -11.13115 -10.86158 -10.83709 -10.75331 -10.64444 -10.57520 -10.36707 -9.81449 -9.71791 -9.14422 -8.97351 -8.85736 -8.23327 -8.21327 -7.96324 -6.57447 -4.15934 1.17585 1.30469 3.15256 3.40219 3.44395 3.48652 3.59278 3.64730 4.09443 4.47483 4.61328 4.66336 4.88911 4.91096 4.93595 4.99818 5.10238 5.11874 5.14838 5.25355 5.27695 5.32494 5.51090 5.61500 5.75190 5.79129 5.84449 5.96587 6.00125 6.11207 6.14765 6.16298 6.21253 6.27025 6.31971 6.35991 6.38731 6.44457 6.55095 6.67215 6.77820 6.86279 7.04719 7.13792 7.26707 7.43969 7.53291 7.75974 8.28429 8.60958 8.76586 9.11509 9.48740 10.80099 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.022414 B = 0.003361 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.937771 B = 8327.991092 C = 8755.293314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.251 3.749 4 H 0.039 0.961 5 C -0.627 4.627 6 H 0.062 0.938 7 C 0.048 3.952 8 N -0.888 5.888 9 Si 1.029 2.971 10 H -0.284 1.284 11 H -0.281 1.281 12 H -0.273 1.273 13 N -0.700 5.700 14 C 0.513 3.487 15 O -0.552 6.552 16 C -0.075 4.075 17 C -0.141 4.141 18 C -0.131 4.131 19 C -0.047 4.047 20 C -0.101 4.101 21 C -0.078 4.078 22 C -0.158 4.158 23 C -0.089 4.089 24 C -0.210 4.210 25 C 0.132 3.868 26 O -0.305 6.305 27 C 0.026 3.974 28 H 0.028 0.972 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.271 0.729 34 H 0.391 0.609 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.129 0.871 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.125 0.875 47 H 0.052 0.948 48 H 0.053 0.947 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.464 7.559 -17.143 24.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.147 3.853 4 H 0.057 0.943 5 C -0.664 4.664 6 H 0.080 0.920 7 C -0.160 4.160 8 N -0.520 5.520 9 Si 0.856 3.144 10 H -0.209 1.209 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.347 5.347 14 C 0.298 3.702 15 O -0.431 6.431 16 C -0.078 4.078 17 C -0.198 4.198 18 C -0.188 4.188 19 C -0.085 4.085 20 C -0.102 4.102 21 C -0.096 4.096 22 C -0.176 4.176 23 C -0.108 4.108 24 C -0.229 4.229 25 C 0.086 3.914 26 O -0.218 6.218 27 C -0.070 4.070 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.224 0.776 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.146 0.854 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.143 0.857 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.799 7.087 -14.666 22.692 hybrid contribution 0.149 0.312 -2.447 2.471 sum -15.651 7.399 -17.112 24.342 Atomic orbital electron populations 1.21890 0.97411 0.98701 1.02057 1.22215 0.93689 0.99830 1.01182 1.18973 0.95604 0.88424 0.82302 0.94328 1.21990 0.89864 1.49824 1.04743 0.92037 1.25592 0.96604 0.91700 1.02071 1.70872 1.13947 1.36629 1.30512 0.84226 0.76045 0.77618 0.76462 1.20937 1.20718 1.19927 1.46234 1.14625 1.55985 1.17851 1.20276 0.82460 0.78798 0.88666 1.90636 1.50796 1.60160 1.41531 1.20718 0.96107 0.96465 0.94543 1.21898 0.98499 0.97470 1.01940 1.21867 1.01611 0.98370 0.96964 1.20255 0.94936 1.00384 0.92903 1.19321 1.02264 0.93079 0.95497 1.20973 0.97807 0.93169 0.97685 1.21028 1.02673 0.99948 0.93934 1.20875 0.98033 0.93201 0.98650 1.21198 1.07860 0.96231 0.97629 1.18826 0.95865 0.83018 0.93641 1.86238 1.78939 1.16834 1.39767 1.23038 0.97907 0.97102 0.88925 0.95296 0.93099 0.93086 0.93308 0.92059 0.91934 0.77635 0.92113 0.91781 0.92215 0.91707 0.92076 0.92819 0.89957 0.90478 0.85355 0.86096 0.86189 0.85748 0.92936 0.92807 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.53 37.16 0.32 -2.68 16 2 C -0.13 -2.99 5.37 -26.73 -0.14 -3.13 16 3 C 0.25 6.07 1.84 -69.08 -0.13 5.94 16 4 H 0.04 1.02 6.12 -51.93 -0.32 0.71 16 5 C -0.63 -17.04 8.92 -34.44 -0.31 -17.35 16 6 H 0.06 1.75 7.96 -52.49 -0.42 1.33 16 7 C 0.05 1.37 5.15 -17.82 -0.09 1.27 16 8 N -0.89 -26.36 13.70 55.43 0.76 -25.60 16 9 Si 1.03 25.35 26.56 -169.99 -4.51 20.84 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.42 6.34 56.52 0.36 -6.06 16 13 N -0.70 -14.34 4.81 -54.93 -0.26 -14.61 16 14 C 0.51 9.86 5.08 -10.98 -0.06 9.81 16 15 O -0.55 -12.29 13.12 5.56 0.07 -12.21 16 16 C -0.07 -1.11 0.64 -155.65 -0.10 -1.21 16 17 C -0.14 -1.86 7.88 37.16 0.29 -1.57 16 18 C -0.13 -1.77 6.87 37.16 0.26 -1.51 16 19 C -0.05 -0.67 3.56 -27.88 -0.10 -0.77 16 20 C -0.10 -1.23 4.02 -104.48 -0.42 -1.65 16 21 C -0.08 -0.83 8.29 -39.60 -0.33 -1.16 16 22 C -0.16 -1.47 10.04 -39.56 -0.40 -1.86 16 23 C -0.09 -0.80 10.04 -39.60 -0.40 -1.20 16 24 C -0.21 -2.03 9.04 -39.43 -0.36 -2.38 16 25 C 0.13 1.51 5.20 -39.21 -0.20 1.31 16 26 O -0.30 -3.47 7.06 -19.42 -0.14 -3.61 16 27 C 0.03 0.19 9.81 101.05 0.99 1.18 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 1.11 7.89 -51.93 -0.41 0.70 16 30 H 0.05 1.06 5.63 -51.93 -0.29 0.77 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.47 5.77 -51.93 -0.30 1.17 16 33 H 0.27 7.94 8.73 -40.82 -0.36 7.58 16 34 H 0.39 7.35 7.36 -40.82 -0.30 7.05 16 35 H 0.06 0.81 7.56 -51.93 -0.39 0.42 16 36 H 0.06 0.75 6.41 -51.93 -0.33 0.42 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.93 7.42 -51.93 -0.39 0.54 16 39 H 0.06 0.76 5.65 -51.92 -0.29 0.47 16 40 H 0.05 0.71 7.56 -51.93 -0.39 0.32 16 41 H 0.08 1.30 7.66 -51.93 -0.40 0.90 16 42 H 0.08 1.13 8.01 -51.93 -0.42 0.71 16 43 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 45 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 46 H 0.12 0.94 6.30 -52.49 -0.33 0.61 16 47 H 0.05 0.33 7.65 -51.93 -0.40 -0.07 16 48 H 0.05 0.35 7.68 -51.93 -0.40 -0.05 16 49 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -31.40 374.18 -7.55 -38.94 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -7.93 Total: 7.57 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -1.17 Total: -16.96 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.49 Total: -40.21 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.06 Total: -15.82 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -4.51 Total: 20.84 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.40 -7.55 -38.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358052610.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.971 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds