Wall clock time and date at job start Tue Mar 31 2020 12:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46709 * 54.27093 * 3 2 1 5 5 C 1.50704 * 109.47191 * 174.26693 * 3 2 1 6 6 H 1.07993 * 119.99899 * 114.30589 * 5 3 2 7 7 C 1.37877 * 119.99804 * 294.31031 * 5 3 2 8 8 N 1.31515 * 120.00092 * 153.95290 * 7 5 3 9 9 Si 1.86797 * 120.00203 * 333.94809 * 7 5 3 10 10 H 1.48495 * 109.47462 * 180.02562 * 9 7 5 11 11 H 1.48508 * 109.47244 * 300.00399 * 9 7 5 12 12 H 1.48497 * 109.47273 * 60.00127 * 9 7 5 13 13 N 1.46493 * 109.47194 * 294.26752 * 3 2 1 14 14 C 1.34780 * 119.99775 * 85.00316 * 13 3 2 15 15 O 1.21273 * 120.00319 * 359.97438 * 14 13 3 16 16 C 1.50707 * 119.99771 * 179.97438 * 14 13 3 17 17 C 1.53003 * 109.47207 * 299.99799 * 16 14 13 18 18 C 1.53003 * 109.46815 * 59.99925 * 16 14 13 19 19 C 1.53001 * 109.47157 * 179.97438 * 16 14 13 20 20 C 1.50698 * 109.47278 * 180.02562 * 19 16 14 21 21 C 1.38163 * 120.02675 * 265.00099 * 20 19 16 22 22 C 1.38251 * 120.05596 * 179.97438 * 21 20 19 23 23 C 1.38287 * 120.10734 * 0.02589 * 22 21 20 24 24 C 1.38126 * 120.06100 * 0.02562 * 23 22 21 25 25 C 1.38712 * 120.02614 * 84.72446 * 20 19 16 26 26 O 1.35898 * 120.05767 * 0.02562 * 25 20 19 27 27 C 1.42894 * 117.00016 * 180.02562 * 26 25 20 28 28 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 30 30 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 31 31 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 32 32 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 33 33 H 0.96998 * 119.99755 * 354.95732 * 8 7 5 34 34 H 0.96995 * 120.00345 * 264.99781 * 13 3 2 35 35 H 1.09001 * 109.46810 * 60.00135 * 17 16 14 36 36 H 1.08998 * 109.46910 * 179.97438 * 17 16 14 37 37 H 1.08993 * 109.47137 * 300.00137 * 17 16 14 38 38 H 1.08998 * 109.47221 * 60.00470 * 18 16 14 39 39 H 1.09007 * 109.46955 * 179.97438 * 18 16 14 40 40 H 1.08996 * 109.47134 * 299.99346 * 18 16 14 41 41 H 1.08999 * 109.47208 * 300.00622 * 19 16 14 42 42 H 1.09003 * 109.46920 * 60.00210 * 19 16 14 43 43 H 1.07998 * 119.97295 * 359.97438 * 21 20 19 44 44 H 1.07995 * 119.94520 * 180.02562 * 22 21 20 45 45 H 1.08002 * 119.97011 * 180.02562 * 23 22 21 46 46 H 1.07997 * 120.03255 * 179.97438 * 24 23 22 47 47 H 1.08996 * 109.47110 * 299.99642 * 27 26 25 48 48 H 1.08993 * 109.47569 * 59.99865 * 27 26 25 49 49 H 1.09006 * 109.47319 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5952 1.9851 0.8343 5 6 3.5403 1.4451 0.1419 6 1 4.1587 1.8024 -0.6681 7 6 4.1233 0.9912 1.3060 8 7 5.3466 0.5087 1.2840 9 14 3.1759 1.0615 2.9143 10 1 4.0186 0.5180 4.0095 11 1 2.8192 2.4708 3.2176 12 1 1.9366 0.2521 2.7946 13 7 1.6675 2.0922 -1.2591 14 6 0.4516 2.6585 -1.3913 15 8 -0.3343 2.6300 -0.4680 16 6 0.0686 3.3273 -2.6864 17 6 1.0426 4.4708 -2.9774 18 6 0.1264 2.3060 -3.8242 19 6 -1.3522 3.8834 -2.5726 20 6 -1.7354 4.5516 -3.8678 21 6 -1.5679 5.9147 -4.0185 22 6 -1.9188 6.5283 -5.2067 23 6 -2.4385 5.7798 -6.2469 24 6 -2.6089 4.4169 -6.1009 25 6 -2.2511 3.7977 -4.9117 26 8 -2.4120 2.4560 -4.7677 27 6 -2.9480 1.7434 -5.8843 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.8116 0.4042 0.4392 34 1 2.2958 2.1148 -1.9976 35 1 2.0547 4.0742 -3.0586 36 1 0.7659 4.9542 -3.9143 37 1 1.0014 5.1983 -2.1668 38 1 -0.5675 1.4914 -3.6169 39 1 -0.1510 2.7896 -4.7609 40 1 1.1385 1.9096 -3.9055 41 1 -2.0458 3.0685 -2.3654 42 1 -1.3937 4.6108 -1.7619 43 1 -1.1626 6.5015 -3.2075 44 1 -1.7867 7.5938 -5.3227 45 1 -2.7115 6.2613 -7.1743 46 1 -3.0152 3.8328 -6.9133 47 1 -3.9376 2.1330 -6.1229 48 1 -2.2910 1.8688 -6.7448 49 1 -3.0249 0.6846 -5.6367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358052610.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:37 Heat of formation + Delta-G solvation = -87.413967 kcal Electronic energy + Delta-G solvation = -28308.299284 eV Core-core repulsion = 24620.277531 eV Total energy + Delta-G solvation = -3688.021753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.73122 -40.74466 -38.38514 -37.38900 -36.46446 -34.47587 -33.25432 -31.98973 -30.99059 -29.10024 -28.43492 -28.08391 -27.39033 -24.74853 -23.98570 -22.92611 -22.45409 -21.39366 -20.58466 -19.39904 -18.69909 -17.65539 -17.34961 -17.10525 -16.79115 -16.34022 -16.26735 -15.71166 -15.32056 -15.20557 -14.95312 -14.71877 -14.52856 -14.42724 -14.31539 -13.84305 -13.72801 -13.56349 -13.41500 -13.08651 -13.00004 -12.75572 -12.68960 -12.65506 -12.47809 -12.28467 -12.23969 -12.00800 -11.81309 -11.79048 -11.75451 -11.59749 -11.54904 -11.22014 -10.46715 -10.40320 -9.74635 -9.71455 -9.00854 -8.80638 -6.39722 0.41730 0.56063 1.45916 1.47876 1.69379 1.85274 2.41888 2.47516 2.52286 2.88059 2.93194 3.69858 3.82748 3.85386 3.99949 4.05694 4.25563 4.30676 4.32582 4.34333 4.40159 4.43916 4.48539 4.54392 4.56392 4.71780 4.74997 4.78340 4.78423 4.84378 4.88421 4.90570 4.99838 5.06829 5.09073 5.18844 5.23781 5.28749 5.32341 5.35573 5.47190 5.55236 5.59707 5.68404 5.72817 5.73384 5.94800 6.03675 6.55453 6.56086 6.91696 7.28135 7.51172 8.55600 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.022414 B = 0.003361 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.937771 B = 8327.991092 C = 8755.293314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C 0.255 3.745 4 H 0.019 0.981 5 C -0.625 4.625 6 H 0.041 0.959 7 C 0.008 3.992 8 N -0.915 5.915 9 Si 1.062 2.938 10 H -0.280 1.280 11 H -0.275 1.275 12 H -0.257 1.257 13 N -0.701 5.701 14 C 0.511 3.489 15 O -0.583 6.583 16 C -0.065 4.065 17 C -0.135 4.135 18 C -0.121 4.121 19 C -0.037 4.037 20 C -0.122 4.122 21 C -0.085 4.085 22 C -0.160 4.160 23 C -0.086 4.086 24 C -0.213 4.213 25 C 0.120 3.880 26 O -0.328 6.328 27 C 0.018 3.982 28 H 0.054 0.946 29 H 0.037 0.963 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.262 0.738 34 H 0.399 0.601 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.133 0.867 44 H 0.143 0.857 45 H 0.148 0.852 46 H 0.146 0.854 47 H 0.064 0.936 48 H 0.066 0.934 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.101 8.389 -19.230 27.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.166 4.166 3 C 0.150 3.850 4 H 0.036 0.964 5 C -0.662 4.662 6 H 0.059 0.941 7 C -0.195 4.195 8 N -0.549 5.549 9 Si 0.884 3.116 10 H -0.205 1.205 11 H -0.201 1.201 12 H -0.182 1.182 13 N -0.349 5.349 14 C 0.298 3.702 15 O -0.463 6.463 16 C -0.069 4.069 17 C -0.193 4.193 18 C -0.178 4.178 19 C -0.075 4.075 20 C -0.123 4.123 21 C -0.103 4.103 22 C -0.178 4.178 23 C -0.104 4.104 24 C -0.231 4.231 25 C 0.075 3.925 26 O -0.242 6.242 27 C -0.077 4.077 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.233 0.767 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.151 0.849 44 H 0.161 0.839 45 H 0.166 0.834 46 H 0.163 0.837 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.444 7.924 -16.789 25.474 hybrid contribution 0.622 0.100 -1.904 2.005 sum -16.822 8.024 -18.693 26.396 Atomic orbital electron populations 1.21753 0.95653 1.00169 1.01327 1.22106 0.95147 0.98530 1.00775 1.18687 0.93449 0.89413 0.83421 0.96370 1.22143 0.91448 1.48676 1.03946 0.94056 1.26622 0.96729 0.91287 1.04873 1.70960 1.15010 1.38881 1.30028 0.83784 0.75800 0.78248 0.73726 1.20501 1.20053 1.18166 1.46096 1.15568 1.56281 1.16920 1.21051 0.81330 0.77884 0.89894 1.90615 1.51507 1.61109 1.43118 1.20683 0.96984 0.96953 0.92241 1.21872 0.97877 0.96729 1.02793 1.21788 1.01439 0.97689 0.96900 1.20057 0.93856 0.99382 0.94179 1.19185 1.04484 0.93842 0.94767 1.21104 0.97970 0.92638 0.98613 1.21320 1.01962 1.01162 0.93332 1.21271 0.96644 0.92985 0.99521 1.21477 1.07342 0.96850 0.97441 1.18973 0.96203 0.83213 0.94128 1.86204 1.79339 1.17057 1.41591 1.23268 0.98697 0.97260 0.88440 0.92670 0.94367 0.93264 0.92934 0.93222 0.92905 0.76667 0.92226 0.89700 0.92715 0.92693 0.90559 0.92613 0.92206 0.91737 0.84941 0.83905 0.83428 0.83666 0.91729 0.91538 0.87496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.39 8.53 71.98 0.61 -4.77 16 2 C -0.13 -5.75 5.37 30.60 0.16 -5.58 16 3 C 0.26 12.42 1.84 44.25 0.08 12.50 16 4 H 0.02 0.98 6.12 -2.39 -0.01 0.97 16 5 C -0.62 -34.45 8.92 25.60 0.23 -34.22 16 6 H 0.04 2.40 7.96 -2.91 -0.02 2.38 16 7 C 0.01 0.45 5.15 84.65 0.44 0.89 16 8 N -0.92 -55.22 13.70 21.45 0.29 -54.92 16 9 Si 1.06 51.30 26.56 68.60 1.82 53.12 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 11 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.26 -11.66 6.34 99.48 0.63 -11.02 16 13 N -0.70 -28.83 4.81 -446.09 -2.15 -30.97 16 14 C 0.51 19.74 5.08 87.66 0.45 20.19 16 15 O -0.58 -26.29 13.12 -3.01 -0.04 -26.33 16 16 C -0.07 -1.91 0.64 -52.92 -0.03 -1.95 16 17 C -0.14 -3.45 7.88 71.98 0.57 -2.89 16 18 C -0.12 -3.15 6.87 71.98 0.49 -2.65 16 19 C -0.04 -1.06 3.56 29.85 0.11 -0.95 16 20 C -0.12 -2.84 4.02 -19.77 -0.08 -2.92 16 21 C -0.09 -1.67 8.29 22.25 0.18 -1.48 16 22 C -0.16 -2.49 10.04 22.28 0.22 -2.26 16 23 C -0.09 -1.23 10.04 22.25 0.22 -1.01 16 24 C -0.21 -3.46 9.04 22.37 0.20 -3.26 16 25 C 0.12 2.55 5.20 22.51 0.12 2.67 16 26 O -0.33 -7.07 7.06 -92.41 -0.65 -7.72 16 27 C 0.02 0.23 9.81 113.37 1.11 1.34 16 28 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.04 1.64 7.89 -2.39 -0.02 1.62 16 30 H 0.05 2.01 5.63 -2.39 -0.01 2.00 16 31 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.05 2.35 5.77 -2.39 -0.01 2.34 16 33 H 0.26 15.75 8.73 -92.71 -0.81 14.94 16 34 H 0.40 15.01 7.36 -92.71 -0.68 14.33 16 35 H 0.06 1.53 7.56 -2.39 -0.02 1.51 16 36 H 0.08 1.83 6.41 -2.39 -0.02 1.81 16 37 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.54 7.42 -2.39 -0.02 1.52 16 39 H 0.08 1.78 5.65 -2.38 -0.01 1.76 16 40 H 0.05 1.41 7.56 -2.39 -0.02 1.39 16 41 H 0.06 1.95 7.66 -2.39 -0.02 1.93 16 42 H 0.06 1.94 8.01 -2.39 -0.02 1.92 16 43 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 44 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 45 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 46 H 0.15 1.67 6.30 -2.91 -0.02 1.65 16 47 H 0.06 0.67 7.65 -2.39 -0.02 0.65 16 48 H 0.07 0.68 7.68 -2.39 -0.02 0.66 16 49 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -68.17 374.18 4.51 -63.66 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: 0.15 Total: 29.51 kcal Atomic # 6 Polarization: -31.44 SS G_CDS: 5.09 Total: -26.36 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -1.85 Total: -85.90 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.69 Total: -34.05 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 1.82 Total: 53.12 kcal Total: -68.17 4.51 -63.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358052610.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.750 kcal (2) G-P(sol) polarization free energy of solvation -68.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds