Wall clock time and date at job start Tue Mar 31 2020 12:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31513 * 120.00011 * 176.07000 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47617 * 275.09134 * 9 7 5 11 11 H 1.48503 * 109.47330 * 35.09078 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21285 * 120.00088 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99846 * 180.02562 * 14 13 3 17 17 C 1.53001 * 109.47168 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47239 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.47239 * 180.02562 * 18 17 16 20 20 C 1.50691 * 109.47136 * 179.97438 * 19 18 17 21 21 C 1.38268 * 119.94874 * 269.72662 * 20 19 18 22 22 C 1.38143 * 120.06248 * 179.72920 * 21 20 19 23 23 C 1.38733 * 119.93777 * 0.55872 * 22 21 20 24 24 O 1.35895 * 120.05267 * 179.68234 * 23 22 21 25 25 C 1.42903 * 117.00223 * 0.02759 * 24 23 22 26 26 C 1.38727 * 119.89059 * 359.71436 * 23 22 21 27 27 C 1.38142 * 119.94795 * 359.97438 * 26 23 22 28 28 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 29 29 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 31 31 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 32 32 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 33 33 H 0.97000 * 120.00194 * 180.02562 * 8 7 5 34 34 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 35 35 H 1.09008 * 109.46634 * 299.99370 * 16 14 13 36 36 H 1.08997 * 109.47717 * 59.99546 * 16 14 13 37 37 H 1.08995 * 109.47052 * 299.99367 * 17 16 14 38 38 H 1.08997 * 109.47188 * 59.99202 * 17 16 14 39 39 H 1.09008 * 109.46758 * 299.99470 * 18 17 16 40 40 H 1.08995 * 109.47110 * 59.99269 * 18 17 16 41 41 H 1.09007 * 109.46397 * 299.99764 * 19 18 17 42 42 H 1.08997 * 109.47188 * 59.99398 * 19 18 17 43 43 H 1.08008 * 119.96385 * 359.97438 * 21 20 19 44 44 H 1.07996 * 120.02979 * 180.25020 * 22 21 20 45 45 H 1.09004 * 109.47469 * 179.97438 * 25 24 23 46 46 H 1.08996 * 109.47037 * 300.00068 * 25 24 23 47 47 H 1.09008 * 109.47032 * 59.99906 * 25 24 23 48 48 H 1.08006 * 120.03159 * 179.97438 * 26 23 22 49 49 H 1.07999 * 119.97606 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4621 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7490 3.2161 3.0797 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3349 2.6302 -0.4641 16 6 0.0645 3.3276 -2.6831 17 6 -1.3555 3.8850 -2.5665 18 6 -1.7464 4.5641 -3.8807 19 6 -3.1662 5.1221 -3.7638 20 6 -3.5509 5.7916 -5.0579 21 6 -3.2911 7.1370 -5.2430 22 6 -3.6377 7.7517 -6.4305 23 6 -4.2574 7.0206 -7.4335 24 8 -4.6052 7.6246 -8.6002 25 6 -4.3021 9.0154 -8.7263 26 6 -4.5221 5.6722 -7.2433 27 6 -4.1677 5.0606 -6.0564 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.8280 1.5271 2.3972 34 1 2.2931 2.1156 -1.9978 35 1 0.7582 4.1421 -2.8918 36 1 0.1042 2.5999 -3.4936 37 1 -2.0494 3.0708 -2.3576 38 1 -1.3948 4.6128 -1.7560 39 1 -1.0524 5.3785 -4.0892 40 1 -1.7070 3.8367 -4.6913 41 1 -3.8604 4.3080 -3.5550 42 1 -3.2051 5.8497 -2.9532 43 1 -2.8132 7.7068 -4.4597 44 1 -3.4309 8.8017 -6.5760 45 1 -4.6309 9.3719 -9.7025 46 1 -4.8173 9.5719 -7.9435 47 1 -3.2264 9.1631 -8.6293 48 1 -5.0049 5.1009 -8.0225 49 1 -4.3740 4.0109 -5.9077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358057475.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:44 Heat of formation + Delta-G solvation = -84.002200 kcal Electronic energy + Delta-G solvation = -25630.145286 eV Core-core repulsion = 21942.271479 eV Total energy + Delta-G solvation = -3687.873807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.45461 -39.19747 -38.16240 -35.68751 -34.83181 -32.37493 -32.09807 -31.39953 -31.19383 -28.87736 -27.74171 -27.14404 -24.52972 -22.95318 -22.74094 -21.68339 -20.89351 -20.08201 -19.46359 -18.48362 -17.25159 -16.65297 -16.10177 -15.87338 -15.81783 -15.66379 -15.37840 -14.73236 -14.48617 -14.17202 -13.99653 -13.75087 -13.56124 -13.15231 -12.90640 -12.77212 -12.69806 -12.35120 -12.33063 -12.02555 -11.86795 -11.77267 -11.42953 -11.29231 -11.03495 -11.00030 -10.98562 -10.90834 -10.66273 -10.62829 -10.50099 -9.94683 -9.84816 -9.29154 -9.19192 -9.01388 -8.69628 -8.34589 -7.95282 -6.22416 -4.25627 1.05141 1.13292 2.91966 3.26526 3.34592 3.38128 3.42447 3.45466 4.06951 4.33584 4.44848 4.55230 4.62816 4.69273 4.73253 4.91021 4.97619 5.04292 5.09354 5.12075 5.14655 5.25840 5.34020 5.42304 5.52819 5.62153 5.68834 5.78791 5.82466 5.93726 5.98962 6.03822 6.07462 6.08527 6.10529 6.27191 6.28167 6.44215 6.44658 6.48691 6.67475 6.80159 7.00811 7.03389 7.05472 7.31219 7.39728 7.60966 8.17289 8.62281 8.78492 9.06880 9.40242 10.89369 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.001845 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.519569 B =15173.145120 C =15483.994369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.237 3.763 4 H 0.049 0.951 5 C -0.531 4.531 6 H 0.078 0.922 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.873 3.127 10 H -0.274 1.274 11 H -0.259 1.259 12 H -0.286 1.286 13 N -0.706 5.706 14 C 0.498 3.502 15 O -0.556 6.556 16 C -0.143 4.143 17 C -0.102 4.102 18 C -0.113 4.113 19 C -0.078 4.078 20 C -0.113 4.113 21 C -0.078 4.078 22 C -0.206 4.206 23 C 0.117 3.883 24 O -0.320 6.320 25 C 0.028 3.972 26 C -0.150 4.150 27 C -0.078 4.078 28 H 0.050 0.950 29 H 0.029 0.971 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.267 0.733 34 H 0.392 0.608 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.099 0.901 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.129 0.871 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.777 11.788 -18.391 28.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C 0.134 3.866 4 H 0.067 0.933 5 C -0.569 4.569 6 H 0.096 0.904 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.700 3.300 10 H -0.199 1.199 11 H -0.183 1.183 12 H -0.213 1.213 13 N -0.354 5.354 14 C 0.284 3.716 15 O -0.436 6.436 16 C -0.183 4.183 17 C -0.140 4.140 18 C -0.151 4.151 19 C -0.115 4.115 20 C -0.113 4.113 21 C -0.096 4.096 22 C -0.224 4.224 23 C 0.072 3.928 24 O -0.234 6.234 25 C -0.067 4.067 26 C -0.168 4.168 27 C -0.096 4.096 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.226 0.774 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.117 0.883 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.147 0.853 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.240 11.678 -17.744 28.660 hybrid contribution 0.141 0.437 0.526 0.698 sum -19.099 12.115 -17.219 28.426 Atomic orbital electron populations 1.21896 0.97431 0.98734 1.02047 1.22087 0.93678 0.99596 1.01126 1.19115 0.95391 0.89010 0.83042 0.93335 1.21031 0.88766 1.52165 0.94915 0.90415 1.24927 0.94873 0.93699 0.98876 1.69882 1.09618 1.48826 1.24328 0.86911 0.81294 0.79457 0.82357 1.19936 1.18301 1.21250 1.46562 1.14726 1.56068 1.18043 1.20573 0.82520 0.79088 0.89448 1.90645 1.50971 1.60237 1.41750 1.21698 0.98666 1.01172 0.96780 1.21317 0.95129 1.00608 0.96923 1.21614 0.95396 1.00075 0.97999 1.20579 0.97265 0.99977 0.93718 1.19905 1.00521 0.93917 0.96935 1.20881 0.97922 0.94304 0.96494 1.21225 1.05623 1.00456 0.95138 1.19038 0.95716 0.92659 0.85389 1.86058 1.78089 1.24864 1.34402 1.23047 1.00920 0.79628 1.03154 1.20427 1.05210 0.92108 0.99089 1.20906 0.96863 0.99776 0.92078 0.93101 0.95212 0.93165 0.93067 0.92221 0.92292 0.77449 0.89516 0.89642 0.91296 0.91279 0.91925 0.91885 0.90884 0.90950 0.85717 0.85613 0.88286 0.92688 0.92625 0.85323 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.53 37.16 0.32 -2.56 16 2 C -0.13 -2.74 5.54 -26.73 -0.15 -2.89 16 3 C 0.24 5.59 1.82 -69.08 -0.13 5.46 16 4 H 0.05 1.26 4.92 -51.93 -0.26 1.00 16 5 C -0.53 -14.23 9.05 -34.44 -0.31 -14.54 16 6 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 7 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 8 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 9 Si 0.87 21.63 26.69 -169.99 -4.54 17.09 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.26 -6.30 6.88 56.52 0.39 -5.91 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 N -0.71 -13.89 5.03 -54.93 -0.28 -14.16 16 14 C 0.50 9.12 6.43 -10.98 -0.07 9.05 16 15 O -0.56 -12.02 13.12 5.55 0.07 -11.95 16 16 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 17 C -0.10 -1.22 4.50 -26.73 -0.12 -1.34 16 18 C -0.11 -1.07 5.20 -26.73 -0.14 -1.20 16 19 C -0.08 -0.69 5.34 -27.89 -0.15 -0.83 16 20 C -0.11 -1.02 5.13 -104.60 -0.54 -1.56 16 21 C -0.08 -0.69 9.69 -39.61 -0.38 -1.07 16 22 C -0.21 -1.77 9.04 -39.43 -0.36 -2.13 16 23 C 0.12 1.11 6.69 -39.22 -0.26 0.85 16 24 O -0.32 -2.89 10.50 -19.41 -0.20 -3.10 16 25 C 0.03 0.14 9.81 101.05 0.99 1.14 16 26 C -0.15 -1.37 9.99 -39.44 -0.39 -1.77 16 27 C -0.08 -0.69 9.69 -39.60 -0.38 -1.07 16 28 H 0.05 1.00 5.63 -51.93 -0.29 0.71 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 1.07 7.88 -51.93 -0.41 0.66 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.35 7.90 -51.93 -0.41 0.94 16 33 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.39 6.83 8.59 -40.82 -0.35 6.48 16 35 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.89 8.10 -51.93 -0.42 0.46 16 38 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 39 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 42 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 43 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 44 H 0.13 0.83 6.30 -52.49 -0.33 0.50 16 45 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 47 H 0.06 0.25 7.66 -51.92 -0.40 -0.15 16 48 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 49 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 394.47 15.07 5.94 5.94 Total: -1.00 -32.14 394.47 -8.88 -41.02 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -8.32 Total: 4.94 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -2.33 Total: -14.33 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.50 Total: -39.61 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.13 Total: -15.05 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.54 Total: 17.09 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.14 -8.88 -41.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358057475.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.987 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds