Wall clock time and date at job start Tue Mar 31 2020 12:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31513 * 120.00011 * 176.07000 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47617 * 275.09134 * 9 7 5 11 11 H 1.48503 * 109.47330 * 35.09078 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21285 * 120.00088 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99846 * 180.02562 * 14 13 3 17 17 C 1.53001 * 109.47168 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47239 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.47239 * 180.02562 * 18 17 16 20 20 C 1.50691 * 109.47136 * 179.97438 * 19 18 17 21 21 C 1.38268 * 119.94874 * 269.72662 * 20 19 18 22 22 C 1.38143 * 120.06248 * 179.72920 * 21 20 19 23 23 C 1.38733 * 119.93777 * 0.55872 * 22 21 20 24 24 O 1.35895 * 120.05267 * 179.68234 * 23 22 21 25 25 C 1.42903 * 117.00223 * 0.02759 * 24 23 22 26 26 C 1.38727 * 119.89059 * 359.71436 * 23 22 21 27 27 C 1.38142 * 119.94795 * 359.97438 * 26 23 22 28 28 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 29 29 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 31 31 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 32 32 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 33 33 H 0.97000 * 120.00194 * 180.02562 * 8 7 5 34 34 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 35 35 H 1.09008 * 109.46634 * 299.99370 * 16 14 13 36 36 H 1.08997 * 109.47717 * 59.99546 * 16 14 13 37 37 H 1.08995 * 109.47052 * 299.99367 * 17 16 14 38 38 H 1.08997 * 109.47188 * 59.99202 * 17 16 14 39 39 H 1.09008 * 109.46758 * 299.99470 * 18 17 16 40 40 H 1.08995 * 109.47110 * 59.99269 * 18 17 16 41 41 H 1.09007 * 109.46397 * 299.99764 * 19 18 17 42 42 H 1.08997 * 109.47188 * 59.99398 * 19 18 17 43 43 H 1.08008 * 119.96385 * 359.97438 * 21 20 19 44 44 H 1.07996 * 120.02979 * 180.25020 * 22 21 20 45 45 H 1.09004 * 109.47469 * 179.97438 * 25 24 23 46 46 H 1.08996 * 109.47037 * 300.00068 * 25 24 23 47 47 H 1.09008 * 109.47032 * 59.99906 * 25 24 23 48 48 H 1.08006 * 120.03159 * 179.97438 * 26 23 22 49 49 H 1.07999 * 119.97606 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4621 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7490 3.2161 3.0797 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3349 2.6302 -0.4641 16 6 0.0645 3.3276 -2.6831 17 6 -1.3555 3.8850 -2.5665 18 6 -1.7464 4.5641 -3.8807 19 6 -3.1662 5.1221 -3.7638 20 6 -3.5509 5.7916 -5.0579 21 6 -3.2911 7.1370 -5.2430 22 6 -3.6377 7.7517 -6.4305 23 6 -4.2574 7.0206 -7.4335 24 8 -4.6052 7.6246 -8.6002 25 6 -4.3021 9.0154 -8.7263 26 6 -4.5221 5.6722 -7.2433 27 6 -4.1677 5.0606 -6.0564 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.8280 1.5271 2.3972 34 1 2.2931 2.1156 -1.9978 35 1 0.7582 4.1421 -2.8918 36 1 0.1042 2.5999 -3.4936 37 1 -2.0494 3.0708 -2.3576 38 1 -1.3948 4.6128 -1.7560 39 1 -1.0524 5.3785 -4.0892 40 1 -1.7070 3.8367 -4.6913 41 1 -3.8604 4.3080 -3.5550 42 1 -3.2051 5.8497 -2.9532 43 1 -2.8132 7.7068 -4.4597 44 1 -3.4309 8.8017 -6.5760 45 1 -4.6309 9.3719 -9.7025 46 1 -4.8173 9.5719 -7.9435 47 1 -3.2264 9.1631 -8.6293 48 1 -5.0049 5.1009 -8.0225 49 1 -4.3740 4.0109 -5.9077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358057475.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:43 Heat of formation + Delta-G solvation = -102.579254 kcal Electronic energy + Delta-G solvation = -25630.950848 eV Core-core repulsion = 21942.271479 eV Total energy + Delta-G solvation = -3688.679369 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.06455 -40.70842 -38.79840 -37.13626 -35.99619 -34.36627 -33.37139 -32.50711 -31.96768 -29.87456 -29.11529 -27.98165 -25.53287 -24.51109 -23.56065 -22.67007 -21.63362 -21.54976 -21.09025 -19.15050 -19.05651 -17.51466 -17.32292 -17.25353 -16.73766 -16.62690 -16.32887 -15.97590 -15.73275 -15.21913 -14.96128 -14.78498 -14.68911 -14.42939 -14.09476 -13.94127 -13.79651 -13.69330 -13.42383 -13.24931 -13.03406 -12.92024 -12.76116 -12.56961 -12.36132 -12.16787 -12.07588 -11.86119 -11.80622 -11.69276 -11.67574 -11.61576 -11.34154 -11.18720 -10.84406 -10.53532 -9.92735 -9.63053 -8.99467 -8.38509 -6.43624 0.41755 0.47423 1.28455 1.32843 1.43975 1.93121 2.27047 2.40948 2.59322 2.81659 3.04690 3.84904 3.87398 3.98463 4.01351 4.13262 4.20839 4.28986 4.33383 4.38395 4.43153 4.44793 4.49109 4.53812 4.59803 4.65371 4.72626 4.74844 4.80719 4.86226 4.90502 4.96210 5.03814 5.11670 5.14474 5.25014 5.28434 5.30298 5.36816 5.41196 5.43957 5.44551 5.56300 5.57695 5.77904 5.84139 5.87592 6.16213 6.47155 6.61487 7.01869 7.22629 7.60274 8.76530 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.001845 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.519569 B =15173.145120 C =15483.994369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.124 4.124 3 C 0.241 3.759 4 H 0.026 0.974 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.032 3.968 8 N -0.931 5.931 9 Si 0.925 3.075 10 H -0.276 1.276 11 H -0.255 1.255 12 H -0.279 1.279 13 N -0.708 5.708 14 C 0.494 3.506 15 O -0.590 6.590 16 C -0.132 4.132 17 C -0.096 4.096 18 C -0.103 4.103 19 C -0.074 4.074 20 C -0.122 4.122 21 C -0.086 4.086 22 C -0.211 4.211 23 C 0.103 3.897 24 O -0.339 6.339 25 C 0.019 3.981 26 C -0.164 4.164 27 C -0.083 4.083 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.031 0.969 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.269 0.731 34 H 0.404 0.596 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.137 0.863 44 H 0.143 0.857 45 H 0.117 0.883 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.135 0.865 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.166 12.276 -19.613 30.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.163 4.163 3 C 0.137 3.863 4 H 0.044 0.956 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.168 4.168 8 N -0.570 5.570 9 Si 0.750 3.250 10 H -0.202 1.202 11 H -0.179 1.179 12 H -0.204 1.204 13 N -0.357 5.357 14 C 0.283 3.717 15 O -0.472 6.472 16 C -0.172 4.172 17 C -0.134 4.134 18 C -0.140 4.140 19 C -0.112 4.112 20 C -0.122 4.122 21 C -0.104 4.104 22 C -0.229 4.229 23 C 0.058 3.942 24 O -0.253 6.253 25 C -0.075 4.075 26 C -0.183 4.183 27 C -0.101 4.101 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.239 0.761 35 H 0.124 0.876 36 H 0.131 0.869 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.154 0.846 44 H 0.161 0.839 45 H 0.135 0.865 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.153 0.847 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.638 12.177 -18.997 30.579 hybrid contribution 0.558 0.327 0.804 1.032 sum -20.080 12.505 -18.193 29.842 Atomic orbital electron populations 1.21761 0.95739 1.00208 1.01245 1.22000 0.95095 0.98156 1.01066 1.18837 0.93025 0.90205 0.84235 0.95575 1.21255 0.90470 1.50715 0.93996 0.92629 1.25590 0.95750 0.93987 1.01519 1.69980 1.11069 1.50888 1.25054 0.86080 0.79987 0.79143 0.79766 1.20154 1.17876 1.20405 1.46370 1.15887 1.56420 1.17070 1.21471 0.81269 0.78118 0.90883 1.90634 1.51761 1.61274 1.43501 1.21726 0.99456 1.01909 0.94124 1.21260 0.94316 0.99991 0.97867 1.21508 0.95786 1.00161 0.96558 1.20529 0.96951 1.00036 0.93659 1.19987 1.00950 0.94204 0.97034 1.21107 0.97936 0.94471 0.96914 1.21444 1.05271 1.01354 0.94857 1.19267 0.95996 0.93056 0.85860 1.86032 1.78287 1.26689 1.34312 1.23304 1.01613 0.78015 1.04573 1.20647 1.05583 0.92435 0.99595 1.21103 0.96589 1.00522 0.91854 0.92840 0.92551 0.94992 0.91976 0.93461 0.92132 0.76097 0.87595 0.86928 0.92296 0.92866 0.91439 0.91014 0.90645 0.90988 0.84563 0.83939 0.86453 0.91881 0.91950 0.84673 0.83910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 8.53 71.98 0.61 -4.45 16 2 C -0.12 -5.27 5.54 30.59 0.17 -5.10 16 3 C 0.24 11.25 1.82 44.25 0.08 11.33 16 4 H 0.03 1.35 4.92 -2.39 -0.01 1.34 16 5 C -0.53 -28.39 9.05 25.60 0.23 -28.16 16 6 H 0.06 3.19 8.06 -2.91 -0.02 3.16 16 7 C 0.03 1.79 5.47 84.65 0.46 2.25 16 8 N -0.93 -55.66 13.96 21.45 0.30 -55.36 16 9 Si 0.93 44.92 26.69 68.60 1.83 46.75 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 11 H -0.25 -12.08 6.88 99.48 0.68 -11.40 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 N -0.71 -27.00 5.03 -446.08 -2.24 -29.24 16 14 C 0.49 17.30 6.43 87.66 0.56 17.86 16 15 O -0.59 -24.96 13.12 -3.05 -0.04 -25.00 16 16 C -0.13 -3.07 5.70 29.85 0.17 -2.90 16 17 C -0.10 -2.11 4.50 30.60 0.14 -1.97 16 18 C -0.10 -1.67 5.20 30.60 0.16 -1.51 16 19 C -0.07 -1.17 5.34 29.85 0.16 -1.01 16 20 C -0.12 -2.01 5.13 -19.85 -0.10 -2.11 16 21 C -0.09 -1.38 9.69 22.25 0.22 -1.16 16 22 C -0.21 -3.33 9.04 22.37 0.20 -3.13 16 23 C 0.10 1.86 6.69 22.51 0.15 2.01 16 24 O -0.34 -5.80 10.50 -92.37 -0.97 -6.77 16 25 C 0.02 0.17 9.81 113.37 1.11 1.28 16 26 C -0.16 -2.86 9.99 22.36 0.22 -2.63 16 27 C -0.08 -1.33 9.69 22.26 0.22 -1.12 16 28 H 0.05 2.00 5.63 -2.39 -0.01 1.99 16 29 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.03 1.32 7.88 -2.39 -0.02 1.30 16 31 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.05 2.10 7.90 -2.38 -0.02 2.08 16 33 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.40 13.47 8.59 -92.71 -0.80 12.68 16 35 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 38 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 39 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 1.14 8.09 -2.38 -0.02 1.12 16 42 H 0.07 1.13 8.08 -2.39 -0.02 1.11 16 43 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 44 H 0.14 1.63 6.30 -2.91 -0.02 1.61 16 45 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.06 0.45 7.66 -2.39 -0.02 0.43 16 47 H 0.06 0.46 7.66 -2.38 -0.02 0.45 16 48 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 49 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -69.35 394.47 3.75 -65.60 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.11 Total: 24.51 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 4.77 Total: -20.50 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -1.94 Total: -84.60 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -1.01 Total: -31.77 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.83 Total: 46.75 kcal Total: -69.35 3.75 -65.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358057475.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.981 kcal (2) G-P(sol) polarization free energy of solvation -69.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds