Wall clock time and date at job start Tue Mar 31 2020 12:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46959 * 2 1 4 4 H 1.08999 * 109.46791 * 174.08323 * 3 2 1 5 5 C 1.50706 * 109.47300 * 54.08790 * 3 2 1 6 6 H 1.07997 * 119.99646 * 239.99961 * 5 3 2 7 7 C 1.37876 * 119.99977 * 59.99917 * 5 3 2 8 8 N 1.31518 * 119.99962 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99826 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47460 * 59.99495 * 9 7 5 11 11 H 1.48499 * 109.46932 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46922 * 299.99472 * 9 7 5 13 13 N 1.46895 * 109.47187 * 294.08661 * 3 2 1 14 14 C 1.46906 * 110.99929 * 275.74392 * 13 3 2 15 15 C 1.50698 * 109.47259 * 176.26299 * 14 13 3 16 16 C 1.38364 * 119.85174 * 89.99622 * 15 14 13 17 17 C 1.37940 * 120.15071 * 180.27657 * 16 15 14 18 18 C 1.39632 * 119.84566 * 359.49896 * 17 16 15 19 19 C 1.47731 * 120.14694 * 180.23283 * 18 17 16 20 20 O 1.21470 * 119.99517 * 180.27491 * 19 18 17 21 21 O 1.34712 * 120.00092 * 0.26969 * 19 18 17 22 22 C 1.45195 * 116.99799 * 180.02562 * 21 19 18 23 23 C 1.53006 * 109.47382 * 60.00117 * 22 21 19 24 24 C 1.53002 * 109.47298 * 179.97438 * 22 21 19 25 25 C 1.53001 * 109.47519 * 300.00215 * 22 21 19 26 26 C 1.39617 * 119.70082 * 0.50238 * 18 17 16 27 27 C 1.37946 * 119.85094 * 359.74886 * 26 18 17 28 28 H 1.09001 * 109.46786 * 178.55599 * 1 2 3 29 29 H 1.08995 * 109.46875 * 298.55735 * 1 2 3 30 30 H 1.09001 * 109.46604 * 58.55825 * 1 2 3 31 31 H 1.08993 * 109.47135 * 239.99586 * 2 1 3 32 32 H 1.09001 * 109.46838 * 119.99732 * 2 1 3 33 33 H 0.97004 * 119.99580 * 180.02562 * 8 7 5 34 34 H 1.00893 * 111.00051 * 39.69728 * 13 3 2 35 35 H 1.08995 * 109.46894 * 56.25829 * 14 13 3 36 36 H 1.09008 * 109.47020 * 296.25896 * 14 13 3 37 37 H 1.08000 * 119.92390 * 0.02562 * 16 15 14 38 38 H 1.08002 * 120.07785 * 179.72225 * 17 16 15 39 39 H 1.09003 * 109.47077 * 59.99635 * 23 22 21 40 40 H 1.08994 * 109.47579 * 179.97438 * 23 22 21 41 41 H 1.08996 * 109.46829 * 300.00261 * 23 22 21 42 42 H 1.09001 * 109.46693 * 60.00089 * 24 22 21 43 43 H 1.08994 * 109.47441 * 180.02562 * 24 22 21 44 44 H 1.09003 * 109.47030 * 300.00284 * 24 22 21 45 45 H 1.08996 * 109.46936 * 59.99589 * 25 22 21 46 46 H 1.09002 * 109.47019 * 180.02562 * 25 22 21 47 47 H 1.09001 * 109.46859 * 300.00149 * 25 22 21 48 48 H 1.08001 * 120.08009 * 179.73205 * 26 18 17 49 49 H 1.07997 * 119.92762 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4443 0.1059 5 6 1.4217 2.1939 1.1508 6 1 0.8149 3.0670 0.9617 7 6 1.6309 1.7667 2.4449 8 7 2.3695 0.7032 2.6750 9 14 0.8639 2.6977 3.8712 10 1 -0.6140 2.6948 3.7268 11 1 1.2382 2.0410 5.1494 12 1 1.3584 4.0980 3.8714 13 7 1.6703 2.0925 -1.2643 14 6 2.6517 1.7945 -2.3162 15 6 2.1928 2.4001 -3.6176 16 6 2.5723 3.6887 -3.9492 17 6 2.1511 4.2512 -5.1362 18 6 1.3486 3.5132 -6.0087 19 6 0.8979 4.1072 -7.2840 20 8 0.1958 3.4646 -8.0387 21 8 1.2657 5.3616 -7.6100 22 6 0.7855 5.8807 -8.8781 23 6 -0.7445 5.8871 -8.8802 24 6 1.3013 7.3079 -9.0732 25 6 1.2932 4.9943 -10.0172 26 6 0.9693 2.2135 -5.6677 27 6 1.3933 1.6651 -4.4751 28 1 -0.3633 -1.0274 -0.0259 29 1 -0.3633 0.4912 0.9026 30 1 -0.3632 0.5361 -0.8768 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.5163 0.4024 3.5855 34 1 0.7408 1.8243 -1.5506 35 1 2.7447 0.7146 -2.4307 36 1 3.6187 2.2153 -2.0406 37 1 3.1963 4.2569 -3.2753 38 1 2.4443 5.2587 -5.3918 39 1 -1.1063 6.5186 -8.0687 40 1 -1.1050 6.2772 -9.8320 41 1 -1.1123 4.8706 -8.7411 42 1 2.3913 7.3036 -9.0716 43 1 0.9405 7.6977 -10.0249 44 1 0.9392 7.9391 -8.2616 45 1 0.9255 3.9777 -9.8781 46 1 0.9331 5.3843 -10.9692 47 1 2.3832 4.9897 -10.0158 48 1 0.3452 1.6388 -6.3360 49 1 1.1004 0.6600 -4.2099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361272681.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:54 Heat of formation + Delta-G solvation = -73.305157 kcal Electronic energy + Delta-G solvation = -26492.828584 eV Core-core repulsion = 22805.418635 eV Total energy + Delta-G solvation = -3687.409949 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.99015 -39.19235 -37.12061 -36.41716 -34.35092 -33.19889 -31.47934 -30.97690 -29.87617 -27.71131 -27.68278 -26.86240 -25.18316 -23.34716 -23.06790 -22.42807 -21.06780 -19.76775 -19.32093 -17.88140 -16.86556 -16.40392 -16.11014 -15.42004 -15.31887 -14.99167 -14.75555 -14.58181 -14.34338 -13.87461 -13.77168 -13.49054 -13.28134 -13.06207 -12.76888 -12.64050 -12.46827 -12.30984 -12.22805 -12.19221 -12.11197 -11.74800 -11.66144 -11.49093 -11.32563 -10.97224 -10.89134 -10.70112 -10.62404 -10.55023 -10.16071 -10.00972 -9.86632 -9.58909 -9.03966 -8.96566 -8.78112 -8.36235 -7.28679 -5.99439 -4.01099 0.70232 1.41791 2.47690 2.51429 3.33513 3.37935 3.41287 3.80286 4.38588 4.43474 4.46134 4.48890 4.60841 4.83547 4.97537 4.98515 5.16882 5.22882 5.29963 5.32427 5.38563 5.40776 5.45017 5.52948 5.53433 5.56105 5.69496 5.80110 5.88198 5.95685 5.99598 6.09335 6.17201 6.23607 6.29275 6.32239 6.34310 6.43623 6.54017 6.72096 6.85905 6.90058 7.22271 7.24290 7.47722 7.66281 7.70798 7.85848 8.23785 8.47183 8.57050 9.04050 9.62560 11.07583 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.023829 B = 0.002272 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.746961 B =12322.598162 C =12762.463677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.146 4.146 3 C 0.215 3.785 4 H 0.034 0.966 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.677 5.677 14 C 0.087 3.913 15 C -0.027 4.027 16 C -0.114 4.114 17 C -0.063 4.063 18 C -0.143 4.143 19 C 0.516 3.484 20 O -0.508 6.508 21 O -0.347 6.347 22 C 0.117 3.883 23 C -0.184 4.184 24 C -0.141 4.141 25 C -0.183 4.183 26 C -0.054 4.054 27 C -0.130 4.130 28 H 0.022 0.978 29 H 0.066 0.934 30 H 0.029 0.971 31 H 0.011 0.989 32 H 0.093 0.907 33 H 0.260 0.740 34 H 0.328 0.672 35 H 0.033 0.967 36 H 0.077 0.923 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.061 0.939 48 H 0.133 0.867 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.019 7.650 -22.365 23.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.186 4.186 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.308 5.308 14 C -0.042 4.042 15 C -0.028 4.028 16 C -0.132 4.132 17 C -0.081 4.081 18 C -0.144 4.144 19 C 0.363 3.637 20 O -0.398 6.398 21 O -0.264 6.264 22 C 0.081 3.919 23 C -0.241 4.241 24 C -0.198 4.198 25 C -0.240 4.240 26 C -0.072 4.072 27 C -0.149 4.149 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.029 0.971 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.147 0.853 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.089 0.911 47 H 0.080 0.920 48 H 0.151 0.849 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.860 7.993 -22.278 23.684 hybrid contribution -0.695 -0.527 0.530 1.020 sum -1.555 7.465 -21.748 23.047 Atomic orbital electron populations 1.21571 0.97624 0.98035 1.01315 1.22115 0.95086 1.01097 1.00261 1.19237 0.96191 0.88686 0.85120 0.94787 1.21000 1.30606 1.11566 0.89660 0.92059 1.24906 0.95549 0.95175 0.98696 1.69873 1.39182 1.24058 1.20462 0.86619 0.79628 0.80022 0.81475 1.20380 1.21523 1.20332 1.60989 1.03755 1.63148 1.02895 1.21040 0.97766 0.97173 0.88263 1.20441 0.93333 0.93810 0.95216 1.21106 1.00881 0.94958 0.96272 1.21427 0.94278 0.99416 0.92985 1.19060 1.05510 0.96045 0.93820 1.21170 0.76940 0.79511 0.86119 1.90716 1.35733 1.62111 1.51269 1.86602 1.69744 1.30296 1.39772 1.22176 0.94501 0.94258 0.80952 1.22498 0.94018 1.04756 1.02804 1.21852 1.02240 0.93005 1.02688 1.22493 1.01726 1.02173 0.97616 1.21155 0.96812 0.93056 0.96218 1.21069 0.99093 1.00727 0.94003 0.95864 0.91478 0.95191 0.97056 0.88875 0.93040 0.85318 0.94852 0.90466 0.84798 0.84813 0.91891 0.91110 0.89736 0.91418 0.90376 0.91354 0.89746 0.91108 0.91985 0.84902 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.39 37.16 0.35 -2.32 16 2 C -0.15 -3.30 5.50 -26.73 -0.15 -3.44 16 3 C 0.22 5.11 2.33 -68.87 -0.16 4.95 16 4 H 0.03 0.89 7.86 -51.93 -0.41 0.49 16 5 C -0.49 -12.91 7.35 -34.44 -0.25 -13.16 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.54 5.22 -17.82 -0.09 1.44 16 8 N -0.90 -24.77 11.39 55.43 0.63 -24.14 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 13 N -0.68 -13.60 6.24 -109.22 -0.68 -14.28 16 14 C 0.09 1.45 5.60 -4.97 -0.03 1.42 16 15 C -0.03 -0.39 5.36 -104.53 -0.56 -0.95 16 16 C -0.11 -1.52 9.68 -39.64 -0.38 -1.90 16 17 C -0.06 -0.78 9.62 -39.17 -0.38 -1.15 16 18 C -0.14 -1.87 5.87 -104.98 -0.62 -2.48 16 19 C 0.52 6.72 7.21 34.61 0.25 6.97 16 20 O -0.51 -7.19 11.89 -19.24 -0.23 -7.42 16 21 O -0.35 -4.03 9.14 -40.53 -0.37 -4.40 16 22 C 0.12 1.09 1.13 -90.62 -0.10 0.99 16 23 C -0.18 -1.67 8.37 37.16 0.31 -1.36 16 24 C -0.14 -0.96 8.85 37.16 0.33 -0.63 16 25 C -0.18 -1.61 8.37 37.16 0.31 -1.30 16 26 C -0.05 -0.70 9.60 -39.17 -0.38 -1.07 16 27 C -0.13 -1.73 9.68 -39.64 -0.38 -2.11 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 1.55 7.05 -51.93 -0.37 1.18 16 30 H 0.03 0.56 6.42 -51.93 -0.33 0.23 16 31 H 0.01 0.23 7.24 -51.93 -0.38 -0.15 16 32 H 0.09 2.38 6.25 -51.93 -0.32 2.05 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.33 6.42 6.55 -39.30 -0.26 6.17 16 35 H 0.03 0.55 7.17 -51.93 -0.37 0.18 16 36 H 0.08 1.29 8.07 -51.92 -0.42 0.87 16 37 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.13 1.41 7.61 -52.49 -0.40 1.01 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.95 5.88 -51.93 -0.31 0.64 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.92 5.88 -51.93 -0.31 0.61 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.13 1.58 7.65 -52.49 -0.40 1.18 16 49 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -28.20 389.66 -9.77 -37.97 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -8.04 Total: 6.49 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -1.93 Total: -16.12 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -0.05 Total: -38.43 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.60 Total: -11.82 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.20 -9.77 -37.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361272681.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.332 kcal (2) G-P(sol) polarization free energy of solvation -28.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds