Wall clock time and date at job start Tue Mar 31 2020 14:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47230 * 2 1 4 4 O 1.42899 * 109.47261 * 180.02562 * 3 2 1 5 5 C 1.35996 * 117.00025 * 179.97438 * 4 3 2 6 6 C 1.38562 * 120.07360 * 0.02562 * 5 4 3 7 7 C 1.38236 * 120.00178 * 179.97438 * 6 5 4 8 8 C 1.50698 * 119.93008 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.47166 * 270.01801 * 8 7 6 10 10 C 1.46898 * 110.99846 * 179.97438 * 9 8 7 11 11 C 1.53007 * 109.46626 * 185.35205 * 10 9 8 12 12 C 1.50699 * 115.55022 * 65.05048 * 11 10 9 13 13 H 1.07997 * 119.99884 * 265.44378 * 12 11 10 14 14 C 1.37872 * 119.99762 * 85.44509 * 12 11 10 15 15 N 1.31519 * 120.00517 * 353.59667 * 14 12 11 16 16 Si 1.86806 * 119.99856 * 173.59803 * 14 12 11 17 17 H 1.48499 * 109.47065 * 60.00072 * 16 14 12 18 18 H 1.48498 * 109.47037 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46857 * 299.99916 * 16 14 12 20 20 C 1.53002 * 117.49847 * 279.37523 * 11 10 9 21 21 C 1.53003 * 117.49464 * 210.71722 * 11 10 9 22 22 C 1.38262 * 120.14249 * 0.02562 * 7 6 5 23 23 C 1.38233 * 120.14832 * 0.23595 * 22 7 6 24 24 C 1.38567 * 119.99826 * 359.48941 * 23 22 7 25 25 O 1.35996 * 120.07346 * 180.25324 * 24 23 22 26 26 C 1.42898 * 116.99971 * 0.27786 * 25 24 23 27 27 H 1.08995 * 109.46766 * 60.00079 * 1 2 3 28 28 H 1.08999 * 109.47206 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47163 * 300.00016 * 1 2 3 30 30 H 1.09001 * 109.46830 * 240.00238 * 2 1 3 31 31 H 1.08998 * 109.47053 * 120.00347 * 2 1 3 32 32 H 1.08995 * 109.47061 * 59.99921 * 3 2 1 33 33 H 1.09007 * 109.47147 * 300.00061 * 3 2 1 34 34 H 1.08004 * 119.99906 * 359.97438 * 6 5 4 35 35 H 1.08994 * 109.47235 * 30.01801 * 8 7 6 36 36 H 1.09005 * 109.47018 * 150.02030 * 8 7 6 37 37 H 1.00901 * 110.99660 * 303.95889 * 9 8 7 38 38 H 1.09000 * 109.47110 * 305.34934 * 10 9 8 39 39 H 1.08994 * 109.46905 * 65.35465 * 10 9 8 40 40 H 0.96997 * 120.00220 * 179.97438 * 15 14 12 41 41 H 1.08999 * 117.49749 * 0.02562 * 20 11 10 42 42 H 1.09001 * 117.49738 * 145.02040 * 20 11 10 43 43 H 1.08999 * 117.49527 * 214.97659 * 21 11 10 44 44 H 1.08998 * 117.49780 * 359.97438 * 21 11 10 45 45 H 1.08001 * 119.92291 * 179.97438 * 22 7 6 46 46 H 1.08005 * 120.00321 * 179.74392 * 23 22 7 47 47 H 1.08992 * 109.47284 * 60.00362 * 26 25 24 48 48 H 1.09004 * 109.47113 * 180.02562 * 26 25 24 49 49 H 1.08995 * 109.47192 * 299.99801 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0865 2.6542 -0.0012 6 6 3.3333 3.8173 -0.0007 7 6 3.9624 5.0482 -0.0008 8 6 3.1417 6.3121 -0.0008 9 7 2.8746 6.7224 -1.3859 10 6 2.0743 7.9537 -1.4250 11 6 1.7043 8.2754 -2.8744 12 6 0.7987 7.2786 -3.5507 13 1 1.2207 6.4862 -4.1509 14 6 -0.5684 7.3784 -3.4030 15 7 -1.0776 8.2630 -2.5736 16 14 -1.6978 6.2569 -4.3811 17 1 -1.4028 4.8412 -4.0438 18 1 -3.1114 6.5616 -4.0435 19 1 -1.4767 6.4763 -5.8331 20 6 2.7619 8.9676 -3.7365 21 6 1.5387 9.7492 -3.2507 22 6 5.3430 5.1222 -0.0020 23 6 6.1003 3.9658 -0.0079 24 6 5.4760 2.7288 -0.0021 25 8 6.2196 1.5901 -0.0027 26 6 7.6403 1.7431 -0.0034 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9564 -0.8900 34 1 2.2547 3.7621 -0.0002 35 1 2.1976 6.1322 0.5133 36 1 3.6905 7.1016 0.5126 37 1 3.7343 6.8328 -1.9024 38 1 1.1651 7.8148 -0.8402 39 1 2.6534 8.7768 -1.0066 40 1 -2.0394 8.3334 -2.4701 41 1 3.7214 9.1934 -3.2713 42 1 2.8025 8.7022 -4.7930 43 1 0.7751 9.9977 -3.9877 44 1 1.6929 10.4894 -2.4656 45 1 5.8309 6.0858 -0.0024 46 1 7.1787 4.0264 -0.0130 47 1 7.9470 2.2926 0.8865 48 1 8.1116 0.7602 -0.0044 49 1 7.9461 2.2930 -0.8934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430067361.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:06 Heat of formation + Delta-G solvation = -48.879895 kcal Electronic energy + Delta-G solvation = -26797.144089 eV Core-core repulsion = 23110.793299 eV Total energy + Delta-G solvation = -3686.350790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.55744 -39.53220 -39.02382 -38.17648 -35.67489 -34.76661 -33.87823 -31.62709 -31.07866 -28.64074 -27.70241 -27.49653 -26.63220 -24.55509 -23.54823 -22.86946 -22.43568 -21.80959 -20.86895 -19.37382 -18.25103 -17.98148 -17.58967 -17.36332 -16.71660 -16.48216 -16.29183 -15.72128 -15.51173 -15.40980 -15.30528 -15.16657 -14.92159 -14.60994 -14.26786 -13.84350 -13.48591 -13.40730 -13.13495 -13.10264 -12.88577 -12.85206 -12.76761 -12.57510 -12.38549 -12.29475 -12.26714 -12.00141 -11.96659 -11.87127 -11.82200 -11.54748 -11.29528 -10.72630 -10.35521 -9.91304 -9.66177 -9.07367 -8.72773 -8.02483 -6.08089 0.31130 0.42333 1.43328 1.43386 1.50677 2.19739 2.38378 2.48219 2.67600 3.27397 3.41764 3.71445 3.76986 3.90956 3.91827 3.94980 4.07307 4.18411 4.26143 4.38838 4.41847 4.44884 4.46522 4.50754 4.53844 4.56227 4.56801 4.68721 4.75086 4.76806 4.78352 4.83920 4.87383 5.01439 5.05874 5.09280 5.14573 5.17785 5.28305 5.30551 5.31715 5.65093 5.66310 5.72965 5.77006 5.89732 6.12604 6.35720 6.52528 6.62728 6.75855 6.94782 7.56764 9.06265 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009959 B = 0.003804 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.757186 B = 7359.687978 C = 9490.531801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.052 3.948 4 O -0.323 6.323 5 C 0.079 3.921 6 C -0.159 4.159 7 C -0.078 4.078 8 C 0.106 3.894 9 N -0.675 5.675 10 C 0.123 3.877 11 C 0.026 3.974 12 C -0.480 4.480 13 H 0.044 0.956 14 C 0.025 3.975 15 N -0.911 5.911 16 Si 0.939 3.061 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.188 4.188 21 C -0.165 4.165 22 C -0.109 4.109 23 C -0.165 4.165 24 C 0.081 3.919 25 O -0.332 6.332 26 C 0.017 3.983 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.127 0.873 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.338 0.662 38 H 0.042 0.958 39 H 0.011 0.989 40 H 0.256 0.744 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.073 0.927 45 H 0.147 0.853 46 H 0.165 0.835 47 H 0.068 0.932 48 H 0.116 0.884 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.179 -12.059 8.781 20.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.023 4.023 4 O -0.237 6.237 5 C 0.033 3.967 6 C -0.178 4.178 7 C -0.079 4.079 8 C -0.023 4.023 9 N -0.306 5.306 10 C -0.006 4.006 11 C 0.025 3.975 12 C -0.518 4.518 13 H 0.062 0.938 14 C -0.174 4.174 15 N -0.549 5.549 16 Si 0.766 3.234 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.226 4.226 21 C -0.203 4.203 22 C -0.128 4.128 23 C -0.183 4.183 24 C 0.036 3.964 25 O -0.246 6.246 26 C -0.077 4.077 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.145 0.855 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.156 0.844 38 H 0.061 0.939 39 H 0.029 0.971 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.165 0.835 46 H 0.182 0.818 47 H 0.086 0.914 48 H 0.134 0.866 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.458 -12.798 8.788 20.546 hybrid contribution -0.532 0.641 -0.366 0.910 sum 12.926 -12.157 8.422 19.642 Atomic orbital electron populations 1.21701 0.93200 1.03333 1.02347 1.21451 0.96786 0.93355 1.03640 1.23048 0.77656 1.00179 1.01421 1.86071 1.22073 1.26314 1.89292 1.18443 0.89864 0.85139 1.03222 1.21003 1.00015 0.91303 1.05513 1.19586 0.94172 0.93725 1.00438 1.20774 0.97939 0.93142 0.90396 1.60172 1.23110 1.35315 1.12033 1.21203 0.94813 0.88150 0.96405 1.18912 0.95958 0.91029 0.91557 1.20491 0.90494 1.11793 1.29064 0.93795 1.25522 0.99272 0.96695 0.95961 1.70093 1.11717 1.36683 1.36455 0.85916 0.78168 0.79757 0.79552 1.20215 1.21144 1.20087 1.22976 0.92933 1.06971 0.99688 1.22436 0.99003 0.96473 1.02426 1.21004 0.92285 0.99125 1.00357 1.21282 1.01578 0.89910 1.05543 1.18451 0.88048 0.87017 1.02894 1.86126 1.20704 1.28577 1.89238 1.23350 0.76653 1.05331 1.02340 0.92921 0.90213 0.91963 0.91147 0.90354 0.91660 0.92905 0.85471 0.91916 0.93398 0.84364 0.93904 0.97067 0.93523 0.89096 0.90858 0.92576 0.90887 0.83506 0.81795 0.91356 0.86596 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.91 71.98 0.71 -1.91 16 2 C -0.11 -2.37 6.30 30.60 0.19 -2.18 16 3 C 0.05 1.35 4.74 71.98 0.34 1.69 16 4 O -0.32 -10.06 9.92 -79.64 -0.79 -10.85 16 5 C 0.08 2.46 6.70 22.57 0.15 2.61 16 6 C -0.16 -5.02 8.69 22.35 0.19 -4.82 16 7 C -0.08 -2.31 5.39 -19.86 -0.11 -2.42 16 8 C 0.11 3.37 5.80 85.56 0.50 3.87 16 9 N -0.68 -25.85 6.36 -517.93 -3.30 -29.14 16 10 C 0.12 5.38 5.51 86.31 0.48 5.86 16 11 C 0.03 1.26 1.55 -52.92 -0.08 1.18 16 12 C -0.48 -26.47 8.74 25.60 0.22 -26.25 16 13 H 0.04 2.49 7.82 -2.91 -0.02 2.46 16 14 C 0.02 1.36 5.39 84.65 0.46 1.82 16 15 N -0.91 -52.36 12.92 21.45 0.28 -52.08 16 16 Si 0.94 44.51 29.54 68.60 2.03 46.54 16 17 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 18 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 C -0.19 -7.86 9.96 30.62 0.30 -7.55 16 21 C -0.17 -7.69 9.41 30.62 0.29 -7.40 16 22 C -0.11 -2.63 9.69 22.27 0.22 -2.42 16 23 C -0.16 -3.71 9.04 22.35 0.20 -3.51 16 24 C 0.08 2.27 6.70 22.57 0.15 2.42 16 25 O -0.33 -8.58 10.28 -79.64 -0.82 -9.40 16 26 C 0.02 0.25 9.81 113.37 1.11 1.37 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 1.60 7.66 -2.39 -0.02 1.58 16 33 H 0.05 1.49 7.66 -2.38 -0.02 1.47 16 34 H 0.13 4.11 6.30 -2.91 -0.02 4.10 16 35 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 36 H 0.05 1.34 8.08 -2.38 -0.02 1.32 16 37 H 0.34 11.99 8.78 -89.69 -0.79 11.20 16 38 H 0.04 2.14 8.13 -2.39 -0.02 2.12 16 39 H 0.01 0.45 8.09 -2.39 -0.02 0.43 16 40 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 41 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 42 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 43 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 44 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 45 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 46 H 0.16 2.50 6.30 -2.91 -0.02 2.48 16 47 H 0.07 0.78 7.68 -2.39 -0.02 0.76 16 48 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 49 H 0.06 0.80 7.65 -2.39 -0.02 0.78 16 Total: -1.00 -65.85 403.71 2.86 -62.98 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.13 Total: 29.59 kcal Atomic # 6 Polarization: -42.97 SS G_CDS: 5.33 Total: -37.64 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -3.02 Total: -81.22 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -1.61 Total: -20.25 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -65.85 2.86 -62.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430067361.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.105 kcal (2) G-P(sol) polarization free energy of solvation -65.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds