Wall clock time and date at job start Tue Mar 31 2020 12:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46994 * 2 1 4 4 N 1.46894 * 109.47009 * 120.00049 * 2 1 3 5 5 C 1.46902 * 111.00039 * 169.34424 * 4 2 1 6 6 C 1.50694 * 109.47407 * 287.93800 * 5 4 2 7 7 C 1.38286 * 119.97123 * 275.86574 * 6 5 4 8 8 C 1.38246 * 120.11143 * 179.97438 * 7 6 5 9 9 C 1.38162 * 120.05609 * 359.76816 * 8 7 6 10 10 C 1.38709 * 119.94402 * 0.48188 * 9 8 7 11 11 O 1.35897 * 120.05985 * 179.76304 * 10 9 8 12 12 C 1.42906 * 116.99679 * 359.73326 * 11 10 9 13 13 C 1.52999 * 109.46967 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47018 * 179.97438 * 13 12 11 15 15 H 1.07992 * 119.99788 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99893 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99897 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00318 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47071 * 89.99876 * 18 16 14 20 20 H 1.48499 * 109.47104 * 210.00153 * 18 16 14 21 21 H 1.48504 * 109.46984 * 330.00082 * 18 16 14 22 22 C 1.38124 * 119.97344 * 95.84242 * 6 5 4 23 23 C 1.46904 * 110.99958 * 293.29963 * 4 2 1 24 24 C 1.54034 * 113.81753 * 273.50594 * 23 4 2 25 25 O 1.44438 * 85.42645 * 223.23886 * 24 23 4 26 26 C 1.44176 * 93.38110 * 24.08887 * 25 24 23 27 27 H 1.09005 * 109.46344 * 300.00091 * 1 2 3 28 28 H 1.08999 * 109.47021 * 60.00062 * 1 2 3 29 29 H 1.08996 * 109.47067 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46344 * 239.99909 * 2 1 3 31 31 H 1.08997 * 109.46621 * 173.34989 * 3 2 1 32 32 H 1.08997 * 109.47076 * 293.34332 * 3 2 1 33 33 H 1.08994 * 109.47189 * 53.34833 * 3 2 1 34 34 H 1.08995 * 109.47248 * 167.93262 * 5 4 2 35 35 H 1.09000 * 109.46753 * 47.93767 * 5 4 2 36 36 H 1.08001 * 119.94503 * 0.02562 * 7 6 5 37 37 H 1.08003 * 119.96791 * 180.02562 * 8 7 6 38 38 H 1.08008 * 120.02943 * 180.25384 * 9 8 7 39 39 H 1.08996 * 109.47412 * 299.99578 * 12 11 10 40 40 H 1.09002 * 109.47131 * 59.99922 * 12 11 10 41 41 H 1.08997 * 109.47565 * 300.00073 * 13 12 11 42 42 H 1.09004 * 109.47396 * 60.00389 * 13 12 11 43 43 H 0.97003 * 119.99705 * 179.97438 * 17 16 14 44 44 H 1.07999 * 120.02731 * 0.02562 * 22 6 5 45 45 H 1.08999 * 112.99619 * 45.33709 * 23 4 2 46 46 H 1.09000 * 113.86499 * 337.34842 * 24 23 4 47 47 H 1.09003 * 113.86315 * 109.04785 * 24 23 4 48 48 H 1.09004 * 113.86707 * 221.76692 * 26 25 24 49 49 H 1.09002 * 113.98046 * 90.07697 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4659 -0.9357 1.1134 6 6 3.7340 -2.0177 0.0994 7 6 3.6491 -3.3475 0.4693 8 6 3.8939 -4.3425 -0.4587 9 6 4.2195 -4.0104 -1.7597 10 6 4.3104 -2.6774 -2.1320 11 8 4.6351 -2.3481 -3.4098 12 6 4.8756 -3.4262 -4.3164 13 6 5.2240 -2.8643 -5.6962 14 6 5.4782 -4.0013 -6.6521 15 1 5.3987 -5.0224 -6.3098 16 6 5.8122 -3.7377 -7.9635 17 7 6.0335 -4.7300 -8.7979 18 14 5.9503 -1.9713 -8.5554 19 1 7.3431 -1.4929 -8.3647 20 1 5.5961 -1.9028 -9.9959 21 1 5.0214 -1.1140 -7.7759 22 6 4.0638 -1.6805 -1.1988 23 6 1.6837 0.0598 2.4156 24 6 2.7211 1.1359 2.7879 25 8 2.5596 0.6584 4.1415 26 6 2.1071 -0.6437 3.7189 27 1 -0.3632 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 3.1235 1.4447 0.1190 32 1 1.7772 1.9207 -0.9435 33 1 1.5828 1.9895 0.8244 34 1 3.8401 -1.2499 2.0877 35 1 3.9709 -0.0190 0.8087 36 1 3.3903 -3.6091 1.4847 37 1 3.8266 -5.3803 -0.1674 38 1 4.4066 -4.7882 -2.4854 39 1 5.7051 -4.0309 -3.9500 40 1 3.9808 -4.0442 -4.3915 41 1 4.3942 -2.2598 -6.0624 42 1 6.1186 -2.2461 -5.6214 43 1 6.2681 -4.5445 -9.7207 44 1 4.1300 -0.6418 -1.4872 45 1 0.6547 0.4189 2.4236 46 1 3.7123 0.9555 2.3719 47 1 2.3718 2.1570 2.6345 48 1 1.2718 -1.0311 4.3024 49 1 2.9089 -1.3703 3.5875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449350310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:12 Heat of formation + Delta-G solvation = -19.738393 kcal Electronic energy + Delta-G solvation = -27005.715928 eV Core-core repulsion = 23320.628809 eV Total energy + Delta-G solvation = -3685.087120 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.41309 -39.84865 -38.05384 -36.87126 -33.40091 -32.77706 -31.27758 -30.93487 -29.42375 -28.12166 -27.97128 -26.58125 -25.74153 -24.96973 -22.45713 -21.73713 -21.41596 -20.36364 -19.26106 -17.68959 -17.17205 -16.93396 -16.65194 -16.37950 -15.73950 -15.63891 -15.46696 -15.19016 -14.68540 -14.39806 -14.19908 -13.73057 -13.54286 -13.36190 -13.18755 -12.94602 -12.76760 -12.55722 -12.47885 -12.31707 -12.12992 -11.80180 -11.58392 -11.48536 -11.44421 -11.39611 -11.23375 -10.86723 -10.83463 -10.64674 -10.21221 -10.02945 -9.96813 -9.84425 -9.37325 -8.84065 -8.64994 -8.57089 -7.92260 -6.16036 -4.17094 1.35754 1.62440 3.23578 3.26150 3.33531 3.38538 3.44646 3.70398 3.88131 4.08021 4.36484 4.41375 4.54804 4.65854 4.73576 4.81069 4.86739 4.93435 5.03714 5.06129 5.10662 5.18022 5.22445 5.28221 5.30797 5.38245 5.43035 5.49286 5.54084 5.57304 5.66162 5.69201 5.74764 5.78339 5.89105 5.89464 5.92868 6.00974 6.09871 6.38604 6.46430 6.59530 6.61293 6.67033 6.76247 6.87074 7.08037 7.19899 7.59718 7.88657 8.36080 8.84630 9.44169 10.96466 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020882 B = 0.002522 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.546644 B =11100.533514 C =11817.599860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 C -0.189 4.189 4 N -0.516 5.516 5 C 0.086 3.914 6 C -0.044 4.044 7 C -0.146 4.146 8 C -0.080 4.080 9 C -0.209 4.209 10 C 0.144 3.856 11 O -0.321 6.321 12 C 0.073 3.927 13 C -0.009 4.009 14 C -0.527 4.527 15 H 0.074 0.926 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.881 3.119 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.263 1.263 22 C -0.156 4.156 23 C 0.024 3.976 24 C -0.003 4.003 25 O -0.382 6.382 26 C 0.038 3.962 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.027 0.973 42 H 0.023 0.977 43 H 0.266 0.734 44 H 0.123 0.877 45 H 0.118 0.882 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.094 0.906 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.507 9.817 24.380 27.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 C -0.248 4.248 4 N -0.239 5.239 5 C -0.040 4.040 6 C -0.045 4.045 7 C -0.165 4.165 8 C -0.098 4.098 9 C -0.228 4.228 10 C 0.097 3.903 11 O -0.234 6.234 12 C -0.001 4.001 13 C -0.046 4.046 14 C -0.565 4.565 15 H 0.093 0.907 16 C -0.130 4.130 17 N -0.535 5.535 18 Si 0.707 3.293 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.188 1.188 22 C -0.175 4.175 23 C -0.085 4.085 24 C -0.082 4.082 25 O -0.300 6.300 26 C -0.039 4.039 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.148 0.852 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.046 0.954 42 H 0.041 0.959 43 H 0.076 0.924 44 H 0.141 0.859 45 H 0.136 0.864 46 H 0.103 0.897 47 H 0.108 0.892 48 H 0.112 0.888 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.640 9.620 24.366 27.914 hybrid contribution 0.537 1.218 -0.757 1.531 sum -9.102 10.838 23.609 27.526 Atomic orbital electron populations 1.21834 0.94094 1.02591 1.01447 1.21797 0.95947 0.92498 0.93540 1.22612 1.01523 0.97925 1.02729 1.62111 1.13624 1.46453 1.01730 1.21188 0.88171 0.96204 0.98453 1.19283 0.98130 0.94143 0.92950 1.20733 1.04210 0.91913 0.99661 1.20907 0.97155 0.99188 0.92543 1.21414 1.07603 0.95624 0.98114 1.19088 0.93297 0.92782 0.85105 1.86115 1.82666 1.37695 1.16932 1.23073 0.99721 0.87881 0.89432 1.19582 0.97314 0.98008 0.89693 1.20835 1.48525 0.93221 0.93909 0.90746 1.24935 0.94252 0.97353 0.96474 1.69895 1.47128 1.31328 1.05180 0.86757 0.79128 0.85367 0.78005 1.20061 1.21162 1.18775 1.20243 1.06978 0.98447 0.91879 1.25119 1.00641 0.92228 0.90536 1.24992 1.00242 1.00264 0.82680 1.89735 1.88419 1.26550 1.25280 1.24208 0.99222 0.87409 0.93078 0.92955 0.92056 0.91673 0.88732 0.92352 0.91643 0.92329 0.89602 0.92973 0.86409 0.86089 0.85165 0.92537 0.92508 0.95447 0.95887 0.92432 0.85913 0.86426 0.89683 0.89207 0.88773 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.18 37.16 0.34 -0.76 16 2 C 0.07 0.60 2.81 -67.71 -0.19 0.41 16 3 C -0.19 -1.41 7.76 37.16 0.29 -1.12 16 4 N -0.52 -4.32 4.55 -228.02 -1.04 -5.36 16 5 C 0.09 0.77 3.58 -4.98 -0.02 0.75 16 6 C -0.04 -0.51 4.92 -104.65 -0.52 -1.03 16 7 C -0.15 -1.66 9.72 -39.56 -0.38 -2.05 16 8 C -0.08 -0.99 10.04 -39.61 -0.40 -1.39 16 9 C -0.21 -3.10 9.04 -39.44 -0.36 -3.45 16 10 C 0.14 2.34 6.69 -39.22 -0.26 2.07 16 11 O -0.32 -6.13 10.14 -19.42 -0.20 -6.33 16 12 C 0.07 1.48 4.68 37.16 0.17 1.65 16 13 C -0.01 -0.20 4.41 -27.88 -0.12 -0.33 16 14 C -0.53 -14.73 9.66 -34.44 -0.33 -15.06 16 15 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 18 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 22 C -0.16 -2.14 8.22 -39.43 -0.32 -2.46 16 23 C 0.02 0.17 3.25 -66.63 -0.22 -0.04 16 24 C 0.00 -0.02 6.45 37.64 0.24 0.22 16 25 O -0.38 -3.69 12.46 -35.23 -0.44 -4.13 16 26 C 0.04 0.28 8.64 37.64 0.33 0.61 16 27 H 0.05 0.35 6.41 -51.93 -0.33 0.02 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.02 6.13 -51.93 -0.32 0.70 16 31 H 0.06 0.44 6.04 -51.93 -0.31 0.13 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.38 5.94 -51.93 -0.31 0.07 16 34 H 0.09 0.69 5.77 -51.93 -0.30 0.39 16 35 H 0.05 0.45 4.99 -51.93 -0.26 0.19 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 38 H 0.13 1.94 6.30 -52.48 -0.33 1.61 16 39 H 0.06 1.11 7.67 -51.93 -0.40 0.71 16 40 H 0.06 1.12 7.65 -51.93 -0.40 0.72 16 41 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 42 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.12 1.58 8.03 -52.49 -0.42 1.16 16 45 H 0.12 0.80 6.28 -51.93 -0.33 0.47 16 46 H 0.09 0.63 5.80 -51.93 -0.30 0.32 16 47 H 0.09 0.59 7.24 -51.93 -0.38 0.22 16 48 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.09 0.60 6.28 -51.93 -0.33 0.27 16 LS Contribution 374.13 15.07 5.64 5.64 Total: -1.00 -30.61 374.13 -9.38 -39.99 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.60 Total: -0.22 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -1.85 Total: -20.00 kcal Atomic # 7 Polarization: -31.42 SS G_CDS: -0.26 Total: -31.68 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.64 Total: -10.46 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.61 -9.38 -39.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449350310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.249 kcal (2) G-P(sol) polarization free energy of solvation -30.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds