Wall clock time and date at job start Tue Mar 31 2020 12:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46994 * 2 1 4 4 N 1.46894 * 109.47009 * 120.00049 * 2 1 3 5 5 C 1.46902 * 111.00039 * 169.34424 * 4 2 1 6 6 C 1.50694 * 109.47407 * 287.93800 * 5 4 2 7 7 C 1.38286 * 119.97123 * 275.86574 * 6 5 4 8 8 C 1.38246 * 120.11143 * 179.97438 * 7 6 5 9 9 C 1.38162 * 120.05609 * 359.76816 * 8 7 6 10 10 C 1.38709 * 119.94402 * 0.48188 * 9 8 7 11 11 O 1.35897 * 120.05985 * 179.76304 * 10 9 8 12 12 C 1.42906 * 116.99679 * 359.73326 * 11 10 9 13 13 C 1.52999 * 109.46967 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47018 * 179.97438 * 13 12 11 15 15 H 1.07992 * 119.99788 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99893 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99897 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00318 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47071 * 89.99876 * 18 16 14 20 20 H 1.48499 * 109.47104 * 210.00153 * 18 16 14 21 21 H 1.48504 * 109.46984 * 330.00082 * 18 16 14 22 22 C 1.38124 * 119.97344 * 95.84242 * 6 5 4 23 23 C 1.46904 * 110.99958 * 293.29963 * 4 2 1 24 24 C 1.54034 * 113.81753 * 273.50594 * 23 4 2 25 25 O 1.44438 * 85.42645 * 223.23886 * 24 23 4 26 26 C 1.44176 * 93.38110 * 24.08887 * 25 24 23 27 27 H 1.09005 * 109.46344 * 300.00091 * 1 2 3 28 28 H 1.08999 * 109.47021 * 60.00062 * 1 2 3 29 29 H 1.08996 * 109.47067 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46344 * 239.99909 * 2 1 3 31 31 H 1.08997 * 109.46621 * 173.34989 * 3 2 1 32 32 H 1.08997 * 109.47076 * 293.34332 * 3 2 1 33 33 H 1.08994 * 109.47189 * 53.34833 * 3 2 1 34 34 H 1.08995 * 109.47248 * 167.93262 * 5 4 2 35 35 H 1.09000 * 109.46753 * 47.93767 * 5 4 2 36 36 H 1.08001 * 119.94503 * 0.02562 * 7 6 5 37 37 H 1.08003 * 119.96791 * 180.02562 * 8 7 6 38 38 H 1.08008 * 120.02943 * 180.25384 * 9 8 7 39 39 H 1.08996 * 109.47412 * 299.99578 * 12 11 10 40 40 H 1.09002 * 109.47131 * 59.99922 * 12 11 10 41 41 H 1.08997 * 109.47565 * 300.00073 * 13 12 11 42 42 H 1.09004 * 109.47396 * 60.00389 * 13 12 11 43 43 H 0.97003 * 119.99705 * 179.97438 * 17 16 14 44 44 H 1.07999 * 120.02731 * 0.02562 * 22 6 5 45 45 H 1.08999 * 112.99619 * 45.33709 * 23 4 2 46 46 H 1.09000 * 113.86499 * 337.34842 * 24 23 4 47 47 H 1.09003 * 113.86315 * 109.04785 * 24 23 4 48 48 H 1.09004 * 113.86707 * 221.76692 * 26 25 24 49 49 H 1.09002 * 113.98046 * 90.07697 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4659 -0.9357 1.1134 6 6 3.7340 -2.0177 0.0994 7 6 3.6491 -3.3475 0.4693 8 6 3.8939 -4.3425 -0.4587 9 6 4.2195 -4.0104 -1.7597 10 6 4.3104 -2.6774 -2.1320 11 8 4.6351 -2.3481 -3.4098 12 6 4.8756 -3.4262 -4.3164 13 6 5.2240 -2.8643 -5.6962 14 6 5.4782 -4.0013 -6.6521 15 1 5.3987 -5.0224 -6.3098 16 6 5.8122 -3.7377 -7.9635 17 7 6.0335 -4.7300 -8.7979 18 14 5.9503 -1.9713 -8.5554 19 1 7.3431 -1.4929 -8.3647 20 1 5.5961 -1.9028 -9.9959 21 1 5.0214 -1.1140 -7.7759 22 6 4.0638 -1.6805 -1.1988 23 6 1.6837 0.0598 2.4156 24 6 2.7211 1.1359 2.7879 25 8 2.5596 0.6584 4.1415 26 6 2.1071 -0.6437 3.7189 27 1 -0.3632 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 3.1235 1.4447 0.1190 32 1 1.7772 1.9207 -0.9435 33 1 1.5828 1.9895 0.8244 34 1 3.8401 -1.2499 2.0877 35 1 3.9709 -0.0190 0.8087 36 1 3.3903 -3.6091 1.4847 37 1 3.8266 -5.3803 -0.1674 38 1 4.4066 -4.7882 -2.4854 39 1 5.7051 -4.0309 -3.9500 40 1 3.9808 -4.0442 -4.3915 41 1 4.3942 -2.2598 -6.0624 42 1 6.1186 -2.2461 -5.6214 43 1 6.2681 -4.5445 -9.7207 44 1 4.1300 -0.6418 -1.4872 45 1 0.6547 0.4189 2.4236 46 1 3.7123 0.9555 2.3719 47 1 2.3718 2.1570 2.6345 48 1 1.2718 -1.0311 4.3024 49 1 2.9089 -1.3703 3.5875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449350310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:11 Heat of formation + Delta-G solvation = -39.008816 kcal Electronic energy + Delta-G solvation = -27006.551557 eV Core-core repulsion = 23320.628809 eV Total energy + Delta-G solvation = -3685.922748 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.05048 -40.99701 -39.02187 -37.81507 -35.43357 -33.59403 -32.93113 -31.93346 -30.66143 -28.84836 -28.55739 -27.19222 -27.12560 -26.15867 -23.53082 -23.17867 -22.05782 -21.79491 -20.09257 -19.16318 -18.32026 -17.78282 -17.56182 -17.10414 -16.98153 -16.89816 -16.71701 -16.25124 -15.85659 -15.53164 -15.05368 -14.85750 -14.56263 -14.47832 -14.27239 -14.15610 -13.88863 -13.72455 -13.23407 -13.21655 -12.98947 -12.93209 -12.75358 -12.50695 -12.49053 -12.32962 -12.12383 -12.05744 -11.92700 -11.84373 -11.74167 -11.55580 -11.47672 -11.38738 -10.83071 -10.57674 -9.81160 -9.24954 -9.08516 -8.36334 -6.43260 0.34358 0.55375 1.34856 1.36263 1.48936 2.31718 2.31836 2.57931 2.80225 2.98604 3.03025 3.41812 3.74163 3.88076 3.90227 4.02908 4.09359 4.17519 4.20285 4.20648 4.23501 4.30460 4.38962 4.39363 4.47585 4.53223 4.55851 4.63828 4.66175 4.70064 4.74690 4.83517 4.91078 4.97626 5.05276 5.10692 5.12051 5.14515 5.17124 5.28192 5.28946 5.38871 5.42314 5.48464 5.55736 5.65446 5.89295 6.02020 6.10316 6.14731 6.53135 6.62397 7.22003 8.79395 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020882 B = 0.002522 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.546644 B =11100.533514 C =11817.599860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.069 3.931 3 C -0.185 4.185 4 N -0.518 5.518 5 C 0.089 3.911 6 C -0.038 4.038 7 C -0.137 4.137 8 C -0.081 4.081 9 C -0.224 4.224 10 C 0.108 3.892 11 O -0.337 6.337 12 C 0.089 3.911 13 C -0.005 4.005 14 C -0.537 4.537 15 H 0.041 0.959 16 C 0.013 3.987 17 N -0.942 5.942 18 Si 0.949 3.051 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.250 1.250 22 C -0.157 4.157 23 C 0.030 3.970 24 C -0.003 4.003 25 O -0.407 6.407 26 C 0.037 3.963 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.057 0.943 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.120 0.880 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.027 0.973 42 H 0.026 0.974 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.125 0.875 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.106 0.894 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.257 11.590 26.705 30.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.038 4.038 3 C -0.244 4.244 4 N -0.241 5.241 5 C -0.037 4.037 6 C -0.039 4.039 7 C -0.156 4.156 8 C -0.098 4.098 9 C -0.243 4.243 10 C 0.062 3.938 11 O -0.251 6.251 12 C 0.014 3.986 13 C -0.043 4.043 14 C -0.575 4.575 15 H 0.060 0.940 16 C -0.185 4.185 17 N -0.582 5.582 18 Si 0.772 3.228 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.174 1.174 22 C -0.177 4.177 23 C -0.079 4.079 24 C -0.082 4.082 25 O -0.325 6.325 26 C -0.040 4.040 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.075 0.925 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.138 0.862 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.044 0.956 43 H 0.079 0.921 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.105 0.895 47 H 0.117 0.883 48 H 0.124 0.876 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.399 11.392 26.722 30.854 hybrid contribution 0.722 0.594 -1.323 1.620 sum -9.676 11.986 25.399 29.705 Atomic orbital electron populations 1.21802 0.93453 1.02155 1.02222 1.21743 0.96446 0.92901 0.92753 1.22566 1.01445 0.97216 1.03137 1.62079 1.13073 1.46906 1.02054 1.21190 0.88778 0.95537 0.98217 1.19580 0.96574 0.95238 0.92477 1.21122 1.02278 0.91493 1.00703 1.21209 0.96215 1.00886 0.91531 1.21479 1.08641 0.94898 0.99304 1.19407 0.95889 0.94177 0.84279 1.86022 1.83849 1.36926 1.18306 1.22632 0.99665 0.87918 0.88390 1.19436 0.97319 0.96570 0.90962 1.21106 1.48236 0.93105 0.95062 0.94048 1.25884 0.93811 1.02152 0.96625 1.70029 1.48452 1.33895 1.05788 0.85674 0.79800 0.79614 0.77716 1.18939 1.20424 1.17408 1.20389 1.06790 0.98110 0.92365 1.25111 1.00953 0.92052 0.89784 1.25079 1.00416 1.00841 0.81822 1.89721 1.88643 1.27682 1.26458 1.24347 0.99778 0.86860 0.93028 0.91586 0.91907 0.92686 0.91135 0.92515 0.91878 0.91088 0.88119 0.92533 0.83518 0.83674 0.86156 0.92572 0.92627 0.95448 0.95552 0.92076 0.85652 0.85691 0.89538 0.88347 0.87587 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.18 71.99 0.66 -1.25 16 2 C 0.07 1.08 2.81 44.92 0.13 1.21 16 3 C -0.19 -2.41 7.76 71.98 0.56 -1.85 16 4 N -0.52 -7.39 4.55 -886.36 -4.03 -11.42 16 5 C 0.09 1.36 3.58 85.55 0.31 1.67 16 6 C -0.04 -0.80 4.92 -19.88 -0.10 -0.90 16 7 C -0.14 -2.75 9.72 22.28 0.22 -2.53 16 8 C -0.08 -1.85 10.04 22.25 0.22 -1.63 16 9 C -0.22 -6.67 9.04 22.36 0.20 -6.47 16 10 C 0.11 3.52 6.69 22.51 0.15 3.67 16 11 O -0.34 -13.09 10.14 -92.39 -0.94 -14.03 16 12 C 0.09 3.69 4.68 71.98 0.34 4.03 16 13 C -0.01 -0.26 4.41 29.85 0.13 -0.13 16 14 C -0.54 -30.89 9.66 25.60 0.25 -30.65 16 15 H 0.04 2.57 7.99 -2.91 -0.02 2.55 16 16 C 0.01 0.78 5.47 84.65 0.46 1.25 16 17 N -0.94 -58.24 13.96 21.45 0.30 -57.94 16 18 Si 0.95 44.11 27.47 68.60 1.88 45.99 16 19 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 22 C -0.16 -4.20 8.22 22.37 0.18 -4.02 16 23 C 0.03 0.35 3.25 45.61 0.15 0.50 16 24 C 0.00 -0.04 6.45 72.30 0.47 0.42 16 25 O -0.41 -6.89 12.46 -148.98 -1.86 -8.75 16 26 C 0.04 0.44 8.64 72.30 0.62 1.06 16 27 H 0.07 0.72 6.41 -2.38 -0.02 0.70 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.46 6.13 -2.38 -0.01 1.45 16 31 H 0.06 0.75 6.04 -2.39 -0.01 0.74 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.74 5.94 -2.39 -0.01 0.73 16 34 H 0.10 1.27 5.77 -2.39 -0.01 1.26 16 35 H 0.06 0.84 4.99 -2.39 -0.01 0.82 16 36 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 38 H 0.12 3.72 6.30 -2.91 -0.02 3.70 16 39 H 0.06 2.29 7.67 -2.39 -0.02 2.28 16 40 H 0.06 2.28 7.65 -2.39 -0.02 2.26 16 41 H 0.03 1.32 7.20 -2.39 -0.02 1.30 16 42 H 0.03 1.25 7.57 -2.38 -0.02 1.23 16 43 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.13 3.19 8.03 -2.91 -0.02 3.17 16 45 H 0.13 1.31 6.28 -2.39 -0.02 1.29 16 46 H 0.09 1.05 5.80 -2.39 -0.01 1.03 16 47 H 0.10 1.04 7.24 -2.39 -0.02 1.02 16 48 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.09 0.97 6.28 -2.39 -0.01 0.96 16 Total: -1.00 -66.93 374.13 1.20 -65.73 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.89 Total: 16.02 kcal Atomic # 6 Polarization: -40.57 SS G_CDS: 4.95 Total: -35.62 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: -3.73 Total: -69.35 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -2.79 Total: -22.77 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 45.99 kcal Total: -66.93 1.20 -65.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449350310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.725 kcal (2) G-P(sol) polarization free energy of solvation -66.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds