Wall clock time and date at job start Tue Mar 31 2020 12:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46971 * 2 1 4 4 C 1.53000 * 109.47036 * 175.00302 * 3 2 1 5 5 C 1.53003 * 109.47334 * 185.00495 * 4 3 2 6 6 O 1.42895 * 109.47533 * 295.00565 * 3 2 1 7 7 C 1.35711 * 117.00329 * 141.17393 * 6 3 2 8 8 C 1.39004 * 119.91052 * 3.01657 * 7 6 3 9 9 C 1.37700 * 120.08760 * 179.97438 * 8 7 6 10 10 C 1.39735 * 119.91065 * 0.02562 * 9 8 7 11 11 C 1.47606 * 120.08068 * 179.97438 * 10 9 8 12 12 O 1.21575 * 120.00634 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99290 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99827 * 179.97438 * 13 11 10 15 15 H 1.09007 * 109.47038 * 325.00450 * 14 13 11 16 16 C 1.50696 * 109.47208 * 205.00293 * 14 13 11 17 17 H 1.08003 * 120.00034 * 324.36374 * 16 14 13 18 18 C 1.37882 * 119.99987 * 144.36554 * 16 14 13 19 19 N 1.31514 * 119.99673 * 178.95704 * 18 16 14 20 20 Si 1.86795 * 119.99995 * 358.95378 * 18 16 14 21 21 H 1.48506 * 109.47145 * 265.39211 * 20 18 16 22 22 H 1.48502 * 109.47229 * 25.39182 * 20 18 16 23 23 H 1.48505 * 109.47342 * 145.39533 * 20 18 16 24 24 C 1.53001 * 109.46941 * 85.00346 * 14 13 11 25 25 C 1.53004 * 109.46753 * 294.47636 * 24 14 13 26 26 C 1.39723 * 119.82748 * 0.27094 * 10 9 8 27 27 C 1.37709 * 119.91041 * 359.47306 * 26 10 9 28 28 H 1.09002 * 109.47007 * 299.99385 * 1 2 3 29 29 H 1.08995 * 109.47571 * 59.99290 * 1 2 3 30 30 H 1.08997 * 109.46901 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46581 * 240.00445 * 2 1 3 32 32 H 1.08995 * 109.47571 * 120.00710 * 2 1 3 33 33 H 1.09005 * 109.47147 * 55.00726 * 3 2 1 34 34 H 1.09000 * 109.47193 * 305.00428 * 4 3 2 35 35 H 1.09001 * 109.47276 * 65.00308 * 4 3 2 36 36 H 1.09000 * 109.46926 * 300.00097 * 5 4 3 37 37 H 1.09001 * 109.47092 * 59.99700 * 5 4 3 38 38 H 1.08990 * 109.47174 * 180.02562 * 5 4 3 39 39 H 1.07998 * 119.95099 * 359.97438 * 8 7 6 40 40 H 1.07999 * 120.03997 * 179.97438 * 9 8 7 41 41 H 0.96997 * 120.00600 * 0.02562 * 13 11 10 42 42 H 0.97007 * 119.99750 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.46990 * 54.47474 * 24 14 13 44 44 H 1.09001 * 109.46734 * 174.48117 * 24 14 13 45 45 H 1.08999 * 109.46853 * 180.02562 * 25 24 14 46 46 H 1.09003 * 109.47166 * 299.99804 * 25 24 14 47 47 H 1.08999 * 109.47253 * 60.00188 * 25 24 14 48 48 H 1.07997 * 120.04834 * 179.70476 * 26 10 9 49 49 H 1.07998 * 119.95645 * 180.25354 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4443 0.1256 5 6 4.0645 2.8850 0.2512 6 8 1.6619 2.0815 -1.2209 7 6 1.2723 3.3791 -1.1423 8 6 1.3145 4.0428 0.0783 9 6 0.9206 5.3595 0.1621 10 6 0.4773 6.0284 -0.9819 11 6 0.0536 7.4397 -0.8962 12 8 0.0895 8.0216 0.1706 13 7 -0.3731 8.0833 -2.0009 14 6 -0.7943 9.4840 -1.9159 15 1 -1.2828 9.6589 -0.9572 16 6 -1.7582 9.7874 -3.0337 17 1 -1.6272 9.3241 -4.0005 18 6 -2.8076 10.6565 -2.8223 19 7 -3.6368 10.9372 -3.8037 20 14 -3.0513 11.4352 -1.1419 21 1 -4.0170 10.6254 -0.3564 22 1 -1.7509 11.4861 -0.4266 23 1 -3.5798 12.8132 -1.3068 24 6 0.4304 10.3930 -2.0377 25 6 1.3439 10.1826 -0.8284 26 6 0.4304 5.3559 -2.2057 27 6 0.8311 4.0407 -2.2824 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6054 1.9815 0.8419 34 1 3.8571 0.8800 1.0112 35 1 4.0029 0.9837 -0.7598 36 1 3.7722 3.4494 -0.6343 37 1 3.6264 3.3457 1.1366 38 1 5.1508 2.8863 0.3402 39 1 1.6569 3.5249 0.9621 40 1 0.9534 5.8743 1.1110 41 1 -0.4021 7.6190 -2.8520 42 1 -4.3749 11.5489 -3.6550 43 1 0.9741 10.1496 -2.9504 44 1 0.1082 11.4337 -2.0730 45 1 2.2161 10.8305 -0.9149 46 1 0.8001 10.4259 0.0844 47 1 1.6660 9.1419 -0.7930 48 1 0.0839 5.8680 -3.0912 49 1 0.7990 3.5214 -3.2288 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450626591.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:22 Heat of formation + Delta-G solvation = -87.051315 kcal Electronic energy + Delta-G solvation = -27158.964573 eV Core-core repulsion = 23470.958547 eV Total energy + Delta-G solvation = -3688.006027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.66219 -40.72362 -38.52453 -36.90660 -35.43318 -34.42255 -33.42542 -33.06782 -31.92450 -30.98281 -29.29591 -27.45613 -25.08955 -24.48954 -24.01028 -22.93634 -22.07577 -21.63085 -20.98615 -19.73429 -19.26786 -18.06086 -17.46521 -16.84522 -16.68837 -16.25392 -16.14935 -15.84907 -15.48365 -14.92475 -14.85727 -14.78630 -14.62567 -14.48542 -14.23087 -13.91223 -13.80384 -13.74496 -13.67546 -13.47477 -13.14921 -12.95452 -12.85622 -12.54551 -12.48779 -12.35326 -12.22380 -12.05977 -11.85035 -11.80607 -11.69619 -11.31960 -11.27224 -11.15082 -10.87074 -10.75106 -10.07899 -9.74033 -9.15299 -8.38891 -6.44828 -0.05079 0.33643 1.28165 1.33549 1.45772 1.97593 2.17562 2.27386 2.47476 2.90458 3.05293 3.60874 3.74176 3.80512 3.92295 3.95314 4.06361 4.21163 4.30000 4.32664 4.35449 4.41966 4.45704 4.52826 4.53620 4.56629 4.60531 4.83435 4.88048 4.90516 4.98140 5.05849 5.08161 5.10510 5.12100 5.15197 5.23269 5.25136 5.26860 5.28717 5.36034 5.40654 5.42275 5.45489 5.56116 5.65272 5.78661 6.14396 6.42471 6.60318 6.92433 7.21398 7.47123 8.76117 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.021799 B = 0.002808 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.182648 B = 9968.773180 C =10459.570764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.119 4.119 3 C 0.067 3.933 4 C -0.137 4.137 5 C -0.162 4.162 6 O -0.308 6.308 7 C 0.161 3.839 8 C -0.215 4.215 9 C -0.028 4.028 10 C -0.189 4.189 11 C 0.546 3.454 12 O -0.586 6.586 13 N -0.700 5.700 14 C 0.240 3.760 15 H 0.032 0.968 16 C -0.525 4.525 17 H 0.056 0.944 18 C 0.033 3.967 19 N -0.930 5.930 20 Si 0.923 3.077 21 H -0.277 1.277 22 H -0.251 1.251 23 H -0.276 1.276 24 C -0.123 4.123 25 C -0.133 4.133 26 C -0.044 4.044 27 C -0.166 4.166 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.158 0.842 40 H 0.130 0.870 41 H 0.402 0.598 42 H 0.270 0.730 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.034 0.966 47 H 0.047 0.953 48 H 0.144 0.856 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.427 -22.973 8.239 28.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.156 4.156 3 C 0.011 3.989 4 C -0.174 4.174 5 C -0.219 4.219 6 O -0.221 6.221 7 C 0.114 3.886 8 C -0.233 4.233 9 C -0.047 4.047 10 C -0.193 4.193 11 C 0.335 3.665 12 O -0.469 6.469 13 N -0.349 5.349 14 C 0.136 3.864 15 H 0.050 0.950 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.167 4.167 19 N -0.569 5.569 20 Si 0.748 3.252 21 H -0.203 1.203 22 H -0.175 1.175 23 H -0.201 1.201 24 C -0.162 4.162 25 C -0.190 4.190 26 C -0.062 4.062 27 C -0.185 4.185 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.175 0.825 40 H 0.148 0.852 41 H 0.238 0.762 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.053 0.947 47 H 0.066 0.934 48 H 0.161 0.839 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 14.294 -22.565 8.735 28.104 hybrid contribution -0.686 0.746 0.126 1.021 sum 13.609 -21.820 8.861 27.199 Atomic orbital electron populations 1.21783 0.95744 1.02382 1.01559 1.21725 0.96221 0.93379 1.04290 1.23025 0.95850 0.94411 0.85589 1.22012 0.93481 0.97907 1.04023 1.21940 1.01860 0.96590 1.01491 1.86088 1.79240 1.21261 1.35496 1.19290 0.91459 0.84010 0.93836 1.21402 1.08362 0.95275 0.98289 1.21063 0.92326 0.93657 0.97646 1.19899 1.09609 0.93603 0.96158 1.18644 0.77047 0.86896 0.83911 1.90687 1.57258 1.69275 1.29716 1.46302 1.64036 1.13707 1.10822 1.18980 0.92523 0.78770 0.96107 0.94959 1.21212 1.10299 1.27170 0.97691 0.92558 1.25600 0.94875 0.96548 0.99705 1.69982 1.16774 1.36427 1.33732 0.86084 0.79552 0.78425 0.81127 1.20274 1.17476 1.20105 1.21988 0.96799 0.99500 0.97921 1.21766 0.98771 1.01011 0.97498 1.21286 0.94444 0.93853 0.96646 1.20527 1.05098 0.94347 0.98508 0.92780 0.93796 0.91352 0.90755 0.87847 0.89723 0.88164 0.90942 0.94137 0.92155 0.91660 0.82478 0.85165 0.76232 0.92061 0.91993 0.92883 0.92374 0.94725 0.93417 0.83882 0.83027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.81 71.98 0.71 -1.24 16 2 C -0.12 -1.19 5.64 30.59 0.17 -1.02 16 3 C 0.07 0.87 2.13 30.59 0.07 0.93 16 4 C -0.14 -1.47 5.64 30.60 0.17 -1.30 16 5 C -0.16 -2.22 8.51 71.98 0.61 -1.61 16 6 O -0.31 -5.78 9.11 -90.32 -0.82 -6.60 16 7 C 0.16 3.47 5.58 22.64 0.13 3.60 16 8 C -0.22 -4.63 7.38 22.33 0.16 -4.46 16 9 C -0.03 -0.77 9.58 22.50 0.22 -0.55 16 10 C -0.19 -5.95 5.87 -20.08 -0.12 -6.07 16 11 C 0.55 21.62 6.36 86.72 0.55 22.18 16 12 O -0.59 -26.66 13.47 -3.95 -0.05 -26.71 16 13 N -0.70 -28.64 4.98 -449.19 -2.24 -30.88 16 14 C 0.24 11.45 1.81 44.24 0.08 11.53 16 15 H 0.03 1.70 4.65 -2.38 -0.01 1.68 16 16 C -0.53 -28.62 9.05 25.60 0.23 -28.39 16 17 H 0.06 3.25 8.06 -2.91 -0.02 3.23 16 18 C 0.03 1.88 5.47 84.66 0.46 2.34 16 19 N -0.93 -55.84 13.96 21.45 0.30 -55.54 16 20 Si 0.92 44.95 27.16 68.60 1.86 46.81 16 21 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 22 H -0.25 -11.95 6.52 99.48 0.65 -11.30 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 24 C -0.12 -5.31 5.58 30.60 0.17 -5.14 16 25 C -0.13 -5.25 8.52 71.98 0.61 -4.64 16 26 C -0.04 -1.14 9.53 22.50 0.21 -0.92 16 27 C -0.17 -3.76 9.97 22.33 0.22 -3.54 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.04 0.70 7.82 -2.39 -0.02 0.68 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.09 1.06 5.32 -2.38 -0.01 1.04 16 34 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.04 0.73 6.54 -2.39 -0.02 0.71 16 37 H 0.06 0.79 6.84 -2.39 -0.02 0.77 16 38 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.16 2.56 4.41 -2.91 -0.01 2.55 16 40 H 0.13 3.67 7.64 -2.91 -0.02 3.65 16 41 H 0.40 14.56 6.61 -92.71 -0.61 13.95 16 42 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 43 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.05 2.34 8.11 -2.39 -0.02 2.32 16 45 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.03 1.46 7.87 -2.39 -0.02 1.44 16 47 H 0.05 1.90 5.63 -2.39 -0.01 1.88 16 48 H 0.14 3.40 6.39 -2.91 -0.02 3.38 16 49 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -67.66 381.42 3.99 -63.67 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.28 Total: 27.54 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 4.67 Total: -18.29 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -1.94 Total: -86.41 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.88 Total: -33.32 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.86 Total: 46.81 kcal Total: -67.66 3.99 -63.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450626591.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.385 kcal (2) G-P(sol) polarization free energy of solvation -67.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds