Wall clock time and date at job start Tue Mar 31 2020 12:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47487 * 2 1 4 4 H 1.08997 * 109.46845 * 55.00238 * 3 2 1 5 5 O 1.42896 * 109.47330 * 294.99926 * 3 2 1 6 6 C 1.52995 * 109.47086 * 174.99813 * 3 2 1 7 7 H 1.08997 * 109.47816 * 300.00500 * 6 3 2 8 8 C 1.52998 * 109.47417 * 180.02562 * 6 3 2 9 9 C 1.53003 * 109.47540 * 175.00316 * 8 6 3 10 10 N 1.46500 * 109.47231 * 60.00495 * 6 3 2 11 11 C 1.34781 * 120.00473 * 205.00281 * 10 6 3 12 12 O 1.21286 * 119.99623 * 359.97438 * 11 10 6 13 13 C 1.50690 * 120.00191 * 179.97438 * 11 10 6 14 14 C 1.53001 * 109.47291 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.46882 * 54.99763 * 14 13 11 16 16 C 1.50704 * 109.47203 * 295.00255 * 14 13 11 17 17 H 1.07998 * 119.99923 * 325.12645 * 16 14 13 18 18 C 1.37874 * 120.00079 * 145.12266 * 16 14 13 19 19 N 1.31514 * 120.00312 * 184.99025 * 18 16 14 20 20 Si 1.86805 * 119.99978 * 4.98926 * 18 16 14 21 21 H 1.48495 * 109.46969 * 84.72973 * 20 18 16 22 22 H 1.48506 * 109.46972 * 204.72838 * 20 18 16 23 23 H 1.48501 * 109.46961 * 324.72712 * 20 18 16 24 24 C 1.50698 * 109.47427 * 175.00096 * 14 13 11 25 25 C 1.38235 * 119.99994 * 64.69377 * 24 14 13 26 26 C 1.38231 * 120.00014 * 179.78790 * 25 24 14 27 27 C 1.38234 * 119.99928 * 0.44317 * 26 25 24 28 28 C 1.38238 * 120.00271 * 359.80942 * 27 26 25 29 29 C 1.38233 * 119.99475 * 359.97438 * 28 27 26 30 30 H 1.08997 * 109.47399 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46981 * 299.99762 * 1 2 3 32 32 H 1.09005 * 109.47099 * 59.99402 * 1 2 3 33 33 H 1.09003 * 109.46749 * 239.99737 * 2 1 3 34 34 H 1.09005 * 109.47099 * 120.00598 * 2 1 3 35 35 H 0.96695 * 114.00349 * 300.00164 * 5 3 2 36 36 H 1.08998 * 109.47118 * 295.00609 * 8 6 3 37 37 H 1.09000 * 109.46951 * 55.00120 * 8 6 3 38 38 H 1.09000 * 109.47158 * 59.99931 * 9 8 6 39 39 H 1.09000 * 109.46939 * 180.02562 * 9 8 6 40 40 H 1.08995 * 109.46569 * 299.99816 * 9 8 6 41 41 H 0.97001 * 119.99991 * 24.72050 * 10 6 3 42 42 H 1.08999 * 109.47747 * 300.00035 * 13 11 10 43 43 H 1.09009 * 109.47239 * 59.99860 * 13 11 10 44 44 H 0.96998 * 120.00774 * 180.02562 * 19 18 16 45 45 H 1.07997 * 119.99687 * 359.97438 * 25 24 14 46 46 H 1.08001 * 120.00312 * 180.27159 * 26 25 24 47 47 H 1.07998 * 120.00213 * 179.83584 * 27 26 25 48 48 H 1.07995 * 120.00514 * 180.02562 * 28 27 26 49 49 H 1.08005 * 119.99917 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 8 1.6621 2.0814 -1.2210 6 6 3.5648 1.4442 0.1258 7 1 3.8533 0.9568 1.0571 8 6 4.0749 2.8866 0.1264 9 6 5.5843 2.8938 0.3769 10 7 4.1490 0.7197 -1.0057 11 6 5.3660 0.1528 -0.8870 12 8 5.9777 0.2427 0.1564 13 6 5.9665 -0.5929 -2.0507 14 6 7.3421 -1.1333 -1.6550 15 1 7.2492 -1.7378 -0.7528 16 6 8.2782 0.0185 -1.3936 17 1 8.1972 0.9234 -1.9776 18 6 9.2379 -0.0828 -0.4089 19 7 9.9895 0.9552 -0.1138 20 14 9.4706 -1.6947 0.5062 21 1 10.3722 -2.5806 -0.2732 22 1 10.0705 -1.4258 1.8378 23 1 8.1540 -2.3589 0.6814 24 6 7.8896 -1.9815 -2.7738 25 6 8.1865 -1.4065 -3.9954 26 6 8.6928 -2.1838 -5.0203 27 6 8.8935 -3.5377 -4.8266 28 6 8.5917 -4.1137 -3.6067 29 6 8.0896 -3.3356 -2.5804 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0142 1.6543 -2.0138 36 1 3.8647 3.3468 -0.8390 37 1 3.5733 3.4490 0.9139 38 1 6.0860 2.3314 -0.4106 39 1 5.9476 3.9215 0.3778 40 1 5.7945 2.4337 1.3423 41 1 3.6582 0.6446 -1.8390 42 1 5.3153 -1.4225 -2.3259 43 1 6.0724 0.0828 -2.8996 44 1 10.6649 0.8839 0.5787 45 1 8.0258 -0.3496 -4.1480 46 1 8.9289 -1.7338 -5.9732 47 1 9.2866 -4.1454 -5.6282 48 1 8.7488 -5.1713 -3.4552 49 1 7.8541 -3.7854 -1.6272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456572954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:09 Heat of formation + Delta-G solvation = -81.180843 kcal Electronic energy + Delta-G solvation = -28028.341435 eV Core-core repulsion = 24340.589971 eV Total energy + Delta-G solvation = -3687.751464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.89287 -38.68733 -37.76228 -34.70515 -33.87916 -32.89023 -32.07536 -31.52932 -30.23515 -29.05407 -27.99277 -25.84258 -24.01439 -22.70868 -21.91547 -21.38991 -20.91876 -20.03478 -19.26881 -17.09868 -16.97628 -16.62580 -16.02944 -15.61527 -15.11893 -14.86572 -14.74963 -14.39304 -14.24067 -13.86733 -13.42912 -13.33326 -13.00403 -12.74298 -12.60432 -12.55477 -12.45098 -12.28415 -12.06251 -11.87870 -11.78031 -11.44634 -11.16337 -11.13663 -11.05589 -10.84411 -10.75672 -10.52099 -10.37594 -10.35037 -9.89996 -9.86351 -9.61188 -9.08182 -8.94792 -8.50358 -8.42476 -8.25464 -7.83815 -5.97813 -3.94387 2.05997 2.11887 3.40935 3.45314 3.46321 3.47392 3.59084 4.18676 4.49575 4.53539 4.56058 4.79346 4.88596 5.25767 5.30532 5.33540 5.42638 5.48985 5.50178 5.52806 5.59511 5.63221 5.66285 5.79792 5.85018 5.91895 5.97338 5.99672 6.04608 6.07584 6.14009 6.21413 6.25097 6.30701 6.48448 6.59220 6.66198 6.68491 6.80997 6.90045 7.02415 7.11263 7.14003 7.23855 7.44601 7.56613 7.70843 7.81672 7.99991 8.53117 9.00247 9.03537 9.66833 11.15176 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012526 B = 0.004300 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.757583 B = 6510.349671 C = 7620.102094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.155 4.155 3 C 0.101 3.899 4 H 0.107 0.893 5 O -0.555 6.555 6 C 0.116 3.884 7 H 0.091 0.909 8 C -0.124 4.124 9 C -0.145 4.145 10 N -0.742 5.742 11 C 0.515 3.485 12 O -0.489 6.489 13 C -0.116 4.116 14 C 0.047 3.953 15 H 0.057 0.943 16 C -0.483 4.483 17 H 0.071 0.929 18 C 0.089 3.911 19 N -0.897 5.897 20 Si 0.869 3.131 21 H -0.278 1.278 22 H -0.293 1.293 23 H -0.262 1.262 24 C -0.039 4.039 25 C -0.102 4.102 26 C -0.126 4.126 27 C -0.150 4.150 28 C -0.124 4.124 29 C -0.141 4.141 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.369 0.631 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.055 0.945 41 H 0.386 0.614 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.261 0.739 45 H 0.120 0.880 46 H 0.110 0.890 47 H 0.108 0.892 48 H 0.108 0.892 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.437 -3.252 -4.524 16.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.193 4.193 3 C 0.041 3.959 4 H 0.124 0.876 5 O -0.360 6.360 6 C 0.010 3.990 7 H 0.109 0.891 8 C -0.163 4.163 9 C -0.203 4.203 10 N -0.399 5.399 11 C 0.301 3.699 12 O -0.360 6.360 13 C -0.156 4.156 14 C 0.028 3.972 15 H 0.075 0.925 16 C -0.520 4.520 17 H 0.089 0.911 18 C -0.114 4.114 19 N -0.534 5.534 20 Si 0.698 3.302 21 H -0.204 1.204 22 H -0.219 1.219 23 H -0.187 1.187 24 C -0.040 4.040 25 C -0.120 4.120 26 C -0.144 4.144 27 C -0.168 4.168 28 C -0.142 4.142 29 C -0.159 4.159 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.217 0.783 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.219 0.781 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.138 0.862 46 H 0.128 0.872 47 H 0.126 0.874 48 H 0.126 0.874 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.102 -2.713 -3.175 15.668 hybrid contribution 0.519 -1.237 -0.177 1.353 sum -14.582 -3.950 -3.352 15.475 Atomic orbital electron populations 1.21708 0.95293 1.01341 1.02179 1.22212 0.96648 0.97143 1.03324 1.22328 0.92582 0.92940 0.88017 0.87562 1.86591 1.76708 1.57177 1.15568 1.21628 0.92010 0.93383 0.91947 0.89056 1.21841 0.97609 0.95233 1.01621 1.21808 0.94150 1.00503 1.03794 1.46134 1.20213 1.57986 1.15550 1.20721 0.79759 0.78787 0.90591 1.90763 1.58613 1.57147 1.29507 1.21646 0.98637 0.98948 0.96406 1.18298 0.91121 0.95560 0.92258 0.92475 1.20548 1.14560 0.98676 1.18243 0.91134 1.24836 0.95276 0.95531 0.95733 1.69878 1.22362 1.29361 1.31799 0.86991 0.78492 0.85294 0.79430 1.20363 1.21908 1.18718 1.20811 0.95121 0.92764 0.95305 1.20970 0.98772 0.99563 0.92664 1.21067 1.00427 0.94055 0.98877 1.20865 1.03457 0.95283 0.97218 1.20962 1.00424 0.98984 0.93866 1.21080 1.02103 0.94196 0.98539 0.92967 0.92888 0.92178 0.91354 0.90926 0.78333 0.91858 0.92303 0.90745 0.94285 0.92563 0.78098 0.91597 0.89967 0.92897 0.86218 0.87169 0.87405 0.87361 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.81 37.16 0.36 -0.84 16 2 C -0.16 -1.40 5.38 -26.73 -0.14 -1.54 16 3 C 0.10 0.99 2.79 -26.73 -0.07 0.92 16 4 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 5 O -0.56 -5.46 12.29 -35.23 -0.43 -5.89 16 6 C 0.12 1.47 2.09 -67.93 -0.14 1.33 16 7 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 8 C -0.12 -1.73 5.39 -26.73 -0.14 -1.88 16 9 C -0.15 -2.64 8.51 37.16 0.32 -2.32 16 10 N -0.74 -9.69 4.38 -53.81 -0.24 -9.92 16 11 C 0.51 9.26 6.15 -10.99 -0.07 9.19 16 12 O -0.49 -11.13 12.12 5.55 0.07 -11.06 16 13 C -0.12 -2.04 4.96 -27.89 -0.14 -2.18 16 14 C 0.05 1.03 1.21 -92.92 -0.11 0.92 16 15 H 0.06 1.37 4.70 -51.93 -0.24 1.13 16 16 C -0.48 -12.83 6.87 -34.44 -0.24 -13.07 16 17 H 0.07 2.03 8.06 -52.49 -0.42 1.61 16 18 C 0.09 2.56 5.47 -17.82 -0.10 2.46 16 19 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 20 Si 0.87 22.50 27.15 -169.99 -4.62 17.88 16 21 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 23 H -0.26 -6.53 6.06 56.52 0.34 -6.19 16 24 C -0.04 -0.80 4.55 -104.62 -0.48 -1.28 16 25 C -0.10 -1.92 8.87 -39.59 -0.35 -2.28 16 26 C -0.13 -2.10 10.05 -39.59 -0.40 -2.50 16 27 C -0.15 -2.40 10.05 -39.58 -0.40 -2.80 16 28 C -0.12 -2.09 10.05 -39.58 -0.40 -2.49 16 29 C -0.14 -2.71 9.43 -39.58 -0.37 -3.08 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.50 7.82 -51.93 -0.41 0.09 16 33 H 0.07 0.60 7.60 -51.93 -0.39 0.20 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.37 2.68 7.51 45.56 0.34 3.02 16 36 H 0.06 0.86 7.84 -51.93 -0.41 0.46 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.59 5.65 -51.93 -0.29 1.30 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 1.11 7.85 -51.93 -0.41 0.70 16 41 H 0.39 3.76 6.95 -40.82 -0.28 3.48 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.08 1.36 7.86 -51.92 -0.41 0.95 16 44 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 45 H 0.12 2.24 7.80 -52.49 -0.41 1.83 16 46 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 47 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 48 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 49 H 0.11 2.02 7.95 -52.48 -0.42 1.61 16 LS Contribution 386.43 15.07 5.82 5.82 Total: -1.00 -32.63 386.43 -9.06 -41.68 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -7.57 Total: 9.70 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -2.87 Total: -21.44 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.54 Total: -36.70 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.37 Total: -16.95 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.62 Total: 17.88 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.63 -9.06 -41.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456572954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.496 kcal (2) G-P(sol) polarization free energy of solvation -32.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds