Wall clock time and date at job start Tue Mar 31 2020 12:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47451 * 2 1 4 4 H 1.08999 * 109.46877 * 304.99945 * 3 2 1 5 5 N 1.46497 * 109.46988 * 64.99687 * 3 2 1 6 6 C 1.34770 * 120.00028 * 274.99949 * 5 3 2 7 7 O 1.21276 * 120.00189 * 0.02562 * 6 5 3 8 8 C 1.50709 * 119.99674 * 180.02562 * 6 5 3 9 9 C 1.53003 * 109.46721 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.47142 * 55.00043 * 9 8 6 11 11 C 1.50701 * 109.47005 * 294.99715 * 9 8 6 12 12 H 1.07997 * 119.99872 * 325.85316 * 11 9 8 13 13 C 1.37876 * 119.99904 * 145.85776 * 11 9 8 14 14 N 1.31516 * 119.99900 * 6.11364 * 13 11 9 15 15 Si 1.86801 * 119.99941 * 186.11952 * 13 11 9 16 16 H 1.48503 * 109.47341 * 89.99730 * 15 13 11 17 17 H 1.48497 * 109.47129 * 209.99685 * 15 13 11 18 18 H 1.48503 * 109.46864 * 329.99384 * 15 13 11 19 19 C 1.50700 * 109.46847 * 174.99960 * 9 8 6 20 20 C 1.38242 * 119.99879 * 63.45427 * 19 9 8 21 21 C 1.38239 * 119.99460 * 179.78554 * 20 19 9 22 22 C 1.38224 * 120.00322 * 0.44421 * 21 20 19 23 23 C 1.38241 * 120.00285 * 359.81428 * 22 21 20 24 24 C 1.38229 * 120.00000 * 243.72908 * 19 9 8 25 25 C 1.53005 * 109.46883 * 184.99972 * 3 2 1 26 26 H 1.09003 * 109.46361 * 184.99777 * 25 3 2 27 27 O 1.42895 * 109.46959 * 304.99638 * 25 3 2 28 28 C 1.53002 * 109.47165 * 65.00067 * 25 3 2 29 29 C 1.52994 * 109.46811 * 174.99925 * 28 25 3 30 30 H 1.08998 * 109.47437 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46816 * 300.00438 * 1 2 3 32 32 H 1.09002 * 109.46928 * 60.00119 * 1 2 3 33 33 H 1.08999 * 109.47197 * 239.99244 * 2 1 3 34 34 H 1.09002 * 109.46928 * 119.99880 * 2 1 3 35 35 H 0.97008 * 119.99581 * 95.00533 * 5 3 2 36 36 H 1.09002 * 109.47073 * 299.99673 * 8 6 5 37 37 H 1.08995 * 109.47404 * 60.00032 * 8 6 5 38 38 H 0.96998 * 119.99813 * 180.02562 * 14 13 11 39 39 H 1.08001 * 120.00061 * 0.02562 * 20 19 9 40 40 H 1.07997 * 119.99336 * 180.27645 * 21 20 19 41 41 H 1.08007 * 120.00450 * 179.82946 * 22 21 20 42 42 H 1.07992 * 120.00406 * 180.02562 * 23 22 21 43 43 H 1.08001 * 120.00242 * 359.97438 * 24 19 9 44 44 H 0.96697 * 113.99932 * 60.01049 * 27 25 3 45 45 H 1.09002 * 109.46753 * 295.00070 * 28 25 3 46 46 H 1.09001 * 109.47101 * 54.99481 * 28 25 3 47 47 H 1.09004 * 109.46898 * 179.97438 * 29 28 25 48 48 H 1.09002 * 109.47335 * 299.99146 * 29 28 25 49 49 H 1.08991 * 109.47578 * 60.00066 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 0.4352 2.6644 1.3668 7 8 -0.3395 2.6320 0.4343 8 6 0.0368 3.3387 2.6544 9 6 -1.3825 3.8944 2.5210 10 1 -2.0594 3.0942 2.2219 11 6 -1.3999 4.9829 1.4790 12 1 -0.5429 5.6290 1.3587 13 6 -2.5099 5.1540 0.6792 14 7 -3.5972 4.4492 0.9040 15 14 -2.4692 6.3867 -0.7237 16 1 -1.9902 5.7155 -1.9588 17 1 -3.8349 6.9240 -0.9503 18 1 -1.5503 7.5006 -0.3774 19 6 -1.8271 4.4597 3.8454 20 6 -1.1607 5.5390 4.3949 21 6 -1.5713 6.0603 5.6076 22 6 -2.6425 5.4966 6.2751 23 6 -3.3056 4.4139 5.7281 24 6 -2.8977 3.8954 4.5133 25 6 3.5649 1.4442 -0.1257 26 1 3.9356 2.4653 -0.0366 27 8 4.1293 0.6403 0.9121 28 6 3.9650 0.8733 -1.4877 29 6 5.4803 0.9898 -1.6642 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2720 2.1231 1.9978 36 1 0.0680 2.6146 3.4686 37 1 0.7282 4.1541 2.8667 38 1 -4.3780 4.5693 0.3411 39 1 -0.3217 5.9774 3.8750 40 1 -1.0535 6.9063 6.0348 41 1 -2.9616 5.9021 7.2239 42 1 -4.1427 3.9737 6.2494 43 1 -3.4158 3.0496 4.0859 44 1 3.8426 -0.2831 0.8943 45 1 3.6723 -0.1752 -1.5424 46 1 3.4631 1.4323 -2.2775 47 1 5.7654 0.5827 -2.6344 48 1 5.7729 2.0384 -1.6097 49 1 5.9821 0.4309 -0.8745 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456572963.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:18 Heat of formation + Delta-G solvation = -85.399273 kcal Electronic energy + Delta-G solvation = -27696.012235 eV Core-core repulsion = 24008.077846 eV Total energy + Delta-G solvation = -3687.934389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.76289 -38.46680 -37.75490 -34.63248 -33.75553 -32.94262 -31.97891 -31.30255 -29.97803 -28.92783 -27.89836 -25.49240 -23.87218 -22.89440 -22.22093 -21.58282 -20.39545 -19.94225 -19.14113 -16.94800 -16.47293 -16.31596 -15.83568 -15.65224 -15.53926 -14.89799 -14.57723 -14.41256 -14.05794 -13.82869 -13.54285 -13.30071 -12.86431 -12.63157 -12.50585 -12.37874 -12.27691 -12.12704 -11.87269 -11.80119 -11.59319 -11.53981 -11.35381 -11.08612 -10.85869 -10.70250 -10.65755 -10.57463 -10.48793 -10.23299 -10.10443 -9.94809 -9.41139 -9.02552 -8.77238 -8.44067 -8.27422 -8.01511 -7.57319 -5.90778 -3.89728 2.31802 2.37854 3.39633 3.45080 3.46786 3.61020 3.67366 4.29051 4.54118 4.60968 4.73949 4.78606 4.85911 5.07038 5.24732 5.26033 5.43737 5.49813 5.56566 5.62093 5.68748 5.74327 5.75399 5.76028 5.86581 5.87147 6.04254 6.05431 6.13970 6.15164 6.19496 6.26541 6.32457 6.40607 6.44332 6.57662 6.77954 6.85070 6.94646 7.03748 7.08264 7.33922 7.47037 7.47997 7.56455 7.88806 7.98254 8.08299 8.21094 8.42290 9.09877 9.18045 9.72025 11.19435 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012391 B = 0.003874 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.231079 B = 7226.658023 C = 8290.008557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.115 3.885 4 H 0.092 0.908 5 N -0.741 5.741 6 C 0.512 3.488 7 O -0.491 6.491 8 C -0.123 4.123 9 C 0.081 3.919 10 H 0.071 0.929 11 C -0.490 4.490 12 H 0.049 0.951 13 C 0.080 3.920 14 N -0.881 5.881 15 Si 0.885 3.115 16 H -0.281 1.281 17 H -0.290 1.290 18 H -0.277 1.277 19 C -0.020 4.020 20 C -0.116 4.116 21 C -0.132 4.132 22 C -0.156 4.156 23 C -0.128 4.128 24 C -0.119 4.119 25 C 0.100 3.900 26 H 0.103 0.897 27 O -0.559 6.559 28 C -0.155 4.155 29 C -0.148 4.148 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.395 0.605 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.258 0.742 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.113 0.887 44 H 0.372 0.628 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.052 0.948 48 H 0.053 0.947 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.995 -8.140 1.636 15.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.009 3.991 4 H 0.110 0.890 5 N -0.397 5.397 6 C 0.299 3.701 7 O -0.362 6.362 8 C -0.164 4.164 9 C 0.062 3.938 10 H 0.090 0.910 11 C -0.527 4.527 12 H 0.067 0.933 13 C -0.123 4.123 14 N -0.518 5.518 15 Si 0.713 3.287 16 H -0.207 1.207 17 H -0.216 1.216 18 H -0.202 1.202 19 C -0.021 4.021 20 C -0.134 4.134 21 C -0.150 4.150 22 C -0.174 4.174 23 C -0.146 4.146 24 C -0.137 4.137 25 C 0.040 3.960 26 H 0.121 0.879 27 O -0.365 6.365 28 C -0.193 4.193 29 C -0.205 4.205 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.229 0.771 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.220 0.780 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.468 -7.605 1.014 14.640 hybrid contribution -0.173 0.363 -0.699 0.807 sum 12.295 -7.242 0.314 14.273 Atomic orbital electron populations 1.21771 0.94081 1.00119 1.04091 1.21991 0.98110 0.96302 1.01104 1.21550 0.93984 0.93774 0.89747 0.88991 1.46171 1.17894 1.59937 1.15659 1.20840 0.80599 0.77774 0.90912 1.90759 1.50221 1.55431 1.39798 1.21799 1.01991 0.99167 0.93397 1.17824 0.89733 0.97474 0.88752 0.91035 1.20666 1.00659 1.15358 1.16017 0.93255 1.24784 0.95457 0.95432 0.96665 1.69913 1.02676 1.40692 1.38562 0.86723 0.76945 0.81417 0.83582 1.20731 1.21571 1.20186 1.20751 0.93157 0.93603 0.94600 1.20951 1.00716 0.96926 0.94768 1.20971 0.97861 0.99825 0.96345 1.20787 0.98183 0.98405 1.00051 1.20982 0.99616 0.97389 0.96662 1.21084 0.97762 1.00615 0.94265 1.22276 0.91330 0.95636 0.86740 0.87881 1.86555 1.72280 1.24820 1.52858 1.22234 0.97372 1.01988 0.97751 1.21694 0.95356 1.02016 1.01425 0.94180 0.91615 0.92050 0.91758 0.92172 0.77109 0.91853 0.90686 0.93212 0.86938 0.87704 0.87842 0.87679 0.86886 0.77982 0.91231 0.90740 0.92914 0.92743 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.51 37.16 0.32 -1.87 16 2 C -0.14 -1.59 4.89 -26.73 -0.13 -1.72 16 3 C 0.12 1.47 2.13 -67.93 -0.14 1.33 16 4 H 0.09 1.42 7.58 -51.93 -0.39 1.02 16 5 N -0.74 -10.76 5.01 -53.80 -0.27 -11.03 16 6 C 0.51 9.81 6.15 -10.98 -0.07 9.74 16 7 O -0.49 -11.53 12.12 5.56 0.07 -11.47 16 8 C -0.12 -2.36 4.95 -27.88 -0.14 -2.50 16 9 C 0.08 1.92 1.67 -92.92 -0.16 1.77 16 10 H 0.07 1.94 6.98 -51.93 -0.36 1.58 16 11 C -0.49 -13.06 6.37 -34.44 -0.22 -13.28 16 12 H 0.05 1.32 7.82 -52.49 -0.41 0.91 16 13 C 0.08 2.24 5.45 -17.82 -0.10 2.15 16 14 N -0.88 -25.82 12.87 55.43 0.71 -25.11 16 15 Si 0.88 22.28 29.54 -169.99 -5.02 17.25 16 16 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 20 C -0.12 -2.35 8.86 -39.58 -0.35 -2.71 16 21 C -0.13 -2.40 10.05 -39.59 -0.40 -2.79 16 22 C -0.16 -2.75 10.05 -39.59 -0.40 -3.15 16 23 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 24 C -0.12 -2.53 9.67 -39.58 -0.38 -2.92 16 25 C 0.10 1.01 2.86 -26.73 -0.08 0.93 16 26 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 27 O -0.56 -5.44 12.51 -35.23 -0.44 -5.88 16 28 C -0.16 -1.33 5.25 -26.73 -0.14 -1.47 16 29 C -0.15 -1.19 9.81 37.15 0.36 -0.82 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.19 5.64 -51.93 -0.29 0.89 16 32 H 0.06 1.06 7.85 -51.93 -0.41 0.65 16 33 H 0.06 0.63 6.45 -51.93 -0.34 0.29 16 34 H 0.06 0.62 7.00 -51.93 -0.36 0.25 16 35 H 0.40 4.96 8.38 -40.82 -0.34 4.62 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.35 7.78 -51.93 -0.40 0.95 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.11 2.22 7.76 -52.49 -0.41 1.81 16 40 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.10 1.52 8.06 -52.48 -0.42 1.10 16 42 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.11 2.42 7.95 -52.49 -0.42 2.01 16 44 H 0.37 2.70 7.31 45.56 0.33 3.03 16 45 H 0.07 0.53 6.70 -51.93 -0.35 0.19 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.06 0.49 7.82 -51.93 -0.41 0.09 16 LS Contribution 389.22 15.07 5.87 5.87 Total: -1.00 -31.43 389.22 -9.50 -40.93 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -7.50 Total: 10.49 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -2.91 Total: -21.06 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.44 Total: -36.13 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.37 Total: -17.35 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.43 -9.50 -40.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456572963.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.472 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds